RNA–Protein interactions for RNA: ENST00000556975.5

TMEM260-214, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-214ENST00000556975 PIP4K2BP78356 416 aa34.28■■■■□ 3.08
TMEM260-214ENST00000556975 HFM1A2PYH4 1435 aa34.27■■■■□ 3.08
TMEM260-214ENST00000556975 RIMS2Q9UQ26 1411 aa34.27■■■■□ 3.08
TMEM260-214ENST00000556975 SLC26A8Q96RN1 970 aa34.26■■■■□ 3.08
TMEM260-214ENST00000556975 CHGAP10645 457 aaKnown RBP34.24■■■■□ 3.07
TMEM260-214ENST00000556975 KCNA6P17658 529 aa34.24■■■■□ 3.07
TMEM260-214ENST00000556975 PLEKHG1Q9ULL1 1385 aa34.23■■■■□ 3.07
TMEM260-214ENST00000556975 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.23■■■■□ 3.07
TMEM260-214ENST00000556975 ALKQ9UM73 1620 aa34.22■■■■□ 3.07
TMEM260-214ENST00000556975 PPP1R15AO75807 674 aaPredicted RBP34.19■■■■□ 3.06
TMEM260-214ENST00000556975 SPHKAPQ2M3C7 1700 aa34.18■■■■□ 3.06
TMEM260-214ENST00000556975 HSPA1LP34931 641 aa34.18■■■■□ 3.06
TMEM260-214ENST00000556975 BCANQ96GW7 911 aa34.18■■■■□ 3.06
TMEM260-214ENST00000556975 XIRP1Q702N8 1843 aaKnown RBP34.15■■■■□ 3.06
TMEM260-214ENST00000556975 TBX22Q9Y458 520 aa34.14■■■■□ 3.06
TMEM260-214ENST00000556975 NWD1Q149M9 1564 aa34.11■■■■□ 3.05
TMEM260-214ENST00000556975 TRIM52Q96A61 297 aa34.1■■■■□ 3.05
TMEM260-214ENST00000556975 TMEM94Q12767 1356 aa34.09■■■■□ 3.05
TMEM260-214ENST00000556975 NKTRP30414 1462 aaKnown RBP34.08■■■■□ 3.05
TMEM260-214ENST00000556975 PROSER2Q86WR7 435 aaPredicted RBP34.08■■■■□ 3.05
TMEM260-214ENST00000556975 NUTM2DQ5VT03 806 aaPredicted RBP34.07■■■■□ 3.04
TMEM260-214ENST00000556975 TRPM2O94759 1503 aa34.07■■■■□ 3.04
TMEM260-214ENST00000556975 ADAMTS13Q76LX8 1427 aa34.06■■■■□ 3.04
TMEM260-214ENST00000556975 SENP3Q9H4L4 574 aaPredicted RBP34.06■■■■□ 3.04
TMEM260-214ENST00000556975 CHD2O14647 1828 aaKnown RBP34.06■■■■□ 3.04
TMEM260-214ENST00000556975 MED1Q15648 1581 aaPredicted RBP34.03■■■■□ 3.04
TMEM260-214ENST00000556975 SLC4A1APQ9BWU0 796 aaKnown RBP34.03■■■■□ 3.04
TMEM260-214ENST00000556975 DIP2AQ14689 1571 aa34.02■■■■□ 3.04
TMEM260-214ENST00000556975 CLTCL1P53675 1640 aa34.02■■■■□ 3.04
TMEM260-214ENST00000556975 PIK3R4Q99570 1358 aa34.01■■■■□ 3.04
TMEM260-214ENST00000556975 ZNF326Q5BKZ1 582 aaKnown RBP33.98■■■■□ 3.03
TMEM260-214ENST00000556975 RBM33Q96EV2 1170 aaKnown RBP33.97■■■■□ 3.03
TMEM260-214ENST00000556975 KIF1BO60333 1816 aa33.94■■■■□ 3.02
TMEM260-214ENST00000556975 FAM135BQ49AJ0 1406 aa33.93■■■■□ 3.02
TMEM260-214ENST00000556975 NCOA3Q9Y6Q9 1424 aa33.93■■■■□ 3.02
TMEM260-214ENST00000556975 SETBP1Q9Y6X0 1596 aa33.91■■■■□ 3.02
TMEM260-214ENST00000556975 NEXMIFQ5QGS0 1516 aa33.9■■■■□ 3.02
TMEM260-214ENST00000556975 MSH6P52701 1360 aa33.9■■■■□ 3.02
TMEM260-214ENST00000556975 NRXN3Q9Y4C0 1643 aa33.9■■■■□ 3.02
TMEM260-214ENST00000556975 ACIN1Q9UKV3 1341 aaKnown RBP33.89■■■■□ 3.02
TMEM260-214ENST00000556975 AMOTL2Q9Y2J4 779 aa33.86■■■■□ 3.01
TMEM260-214ENST00000556975 MPHOSPH9Q99550 1183 aa33.85■■■■□ 3.01
TMEM260-214ENST00000556975 PTPRUQ92729 1446 aa33.85■■■■□ 3.01
TMEM260-214ENST00000556975 PHF23Q9BUL5 403 aaPredicted RBP33.84■■■■□ 3.01
TMEM260-214ENST00000556975 RPGRIP1LQ68CZ1 1315 aa33.82■■■■□ 3.01
TMEM260-214ENST00000556975 SETD5Q9C0A6 1442 aa33.81■■■■□ 3
TMEM260-214ENST00000556975 FOXD1Q16676 465 aa33.81■■■■□ 3
TMEM260-214ENST00000556975 VGFO15240 615 aaPredicted RBP33.8■■■■□ 3
TMEM260-214ENST00000556975 SLAIN2Q9P270 581 aa33.8■■■■□ 3
TMEM260-214ENST00000556975 METP08581 1390 aa33.77■■■■□ 3
TMEM260-214ENST00000556975 C19orf44Q9H6X5 657 aa33.77■■■■□ 3
TMEM260-214ENST00000556975 ROBO1Q9Y6N7 1651 aa33.76■■■□□ 2.99
TMEM260-214ENST00000556975 XRN1Q8IZH2 1706 aaKnown RBP33.75■■■□□ 2.99
TMEM260-214ENST00000556975 C14orf37Q86TY3 774 aa33.74■■■□□ 2.99
TMEM260-214ENST00000556975 CCDC144AA2RUR9 1427 aa33.73■■■□□ 2.99
TMEM260-214ENST00000556975 CADPS2Q86UW7 1296 aa33.72■■■□□ 2.99
TMEM260-214ENST00000556975 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.7■■■□□ 2.99
TMEM260-214ENST00000556975 PPLO60437 1756 aa33.69■■■□□ 2.98
TMEM260-214ENST00000556975 ATF3P18847 181 aa33.67■■■□□ 2.98
TMEM260-214ENST00000556975 RAB3GAP2Q9H2M9 1393 aa33.67■■■□□ 2.98
TMEM260-214ENST00000556975 SPATA31E1Q6ZUB1 1445 aa33.66■■■□□ 2.98
TMEM260-214ENST00000556975 SETD1AO15047 1707 aaKnown RBP33.64■■■□□ 2.98
TMEM260-214ENST00000556975 DCCP43146 1447 aa33.63■■■□□ 2.97
TMEM260-214ENST00000556975 RGL3Q3MIN7 710 aa33.59■■■□□ 2.97
TMEM260-214ENST00000556975 ANKRD30BQ9BXX2 1392 aa33.58■■■□□ 2.97
TMEM260-214ENST00000556975 PRAG1Q86YV5 1406 aa33.57■■■□□ 2.96
TMEM260-214ENST00000556975 HRCP23327 699 aa33.56■■■□□ 2.96
TMEM260-214ENST00000556975 ADGRF5Q8IZF2 1346 aa33.55■■■□□ 2.96
TMEM260-214ENST00000556975 PTCH1Q13635 1447 aa33.55■■■□□ 2.96
TMEM260-214ENST00000556975 PHLPP1O60346 1717 aa33.54■■■□□ 2.96
TMEM260-214ENST00000556975 ADGRL3Q9HAR2 1447 aa33.53■■■□□ 2.96
TMEM260-214ENST00000556975 IFT172Q9UG01 1749 aa33.53■■■□□ 2.96
TMEM260-214ENST00000556975 ROBO2Q9HCK4 1378 aa33.49■■■□□ 2.95
TMEM260-214ENST00000556975 MST1RQ04912 1400 aa33.49■■■□□ 2.95
TMEM260-214ENST00000556975 BRINP3Q76B58 766 aa33.49■■■□□ 2.95
TMEM260-214ENST00000556975 COL16A1Q07092 1604 aaPredicted RBP33.48■■■□□ 2.95
TMEM260-214ENST00000556975 AHDC1Q5TGY3 1603 aaPredicted RBP33.48■■■□□ 2.95
TMEM260-214ENST00000556975 JCADQ9P266 1359 aa33.47■■■□□ 2.95
TMEM260-214ENST00000556975 NALCNQ8IZF0 1738 aa33.46■■■□□ 2.95
TMEM260-214ENST00000556975 RGS17Q9UGC6 210 aaPredicted RBP33.46■■■□□ 2.95
TMEM260-214ENST00000556975 PIK3C2GO75747 1445 aa33.43■■■□□ 2.94
TMEM260-214ENST00000556975 ASXL1Q8IXJ9 1541 aa33.4■■■□□ 2.94
TMEM260-214ENST00000556975 TECPR2O15040 1411 aa33.37■■■□□ 2.93
TMEM260-214ENST00000556975 LRPPRCP42704 1394 aaKnown RBP33.37■■■□□ 2.93
TMEM260-214ENST00000556975 NRXN1Q9ULB1 1477 aa33.37■■■□□ 2.93
TMEM260-214ENST00000556975 MYOM2P54296 1465 aa33.36■■■□□ 2.93
TMEM260-214ENST00000556975 ABCC11Q96J66 1382 aa33.35■■■□□ 2.93
TMEM260-214ENST00000556975 C14orf93Q9H972 538 aaKnown RBP33.35■■■□□ 2.93
TMEM260-214ENST00000556975 C1orf167Q5SNV9 1468 aa33.34■■■□□ 2.93
TMEM260-214ENST00000556975 SPATA31A6Q5VVP1 1343 aa33.33■■■□□ 2.93
TMEM260-214ENST00000556975 TMEM132EQ6IEE7 984 aa33.33■■■□□ 2.93
TMEM260-214ENST00000556975 NHSL1Q5SYE7 1610 aa33.32■■■□□ 2.92
TMEM260-214ENST00000556975 STK26Q9P289 416 aa33.31■■■□□ 2.92
TMEM260-214ENST00000556975 SHPRHQ149N8 1683 aa33.29■■■□□ 2.92
TMEM260-214ENST00000556975 YTHDC2Q9H6S0 1430 aaKnown RBP33.28■■■□□ 2.92
TMEM260-214ENST00000556975 KNDC1Q76NI1 1749 aa33.28■■■□□ 2.92
TMEM260-214ENST00000556975 POTEAQ6S8J7 498 aa33.28■■■□□ 2.92
TMEM260-214ENST00000556975 SIRT1Q96EB6 747 aa33.28■■■□□ 2.92
TMEM260-214ENST00000556975 WAPLQ7Z5K2 1190 aa33.27■■■□□ 2.92
TMEM260-214ENST00000556975 CFAP70Q5T0N1 1121 aa33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms