RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NEURL4Q96JN8 1562 aa16.82■□□□□ 0.28
CCDC88C-212ENST00000556767 RIMS2Q9UQ26 1411 aa16.82■□□□□ 0.28
CCDC88C-212ENST00000556767 NUTM2DQ5VT03 806 aaPredicted RBP16.82■□□□□ 0.28
CCDC88C-212ENST00000556767 KIF1BO60333 1816 aa16.82■□□□□ 0.28
CCDC88C-212ENST00000556767 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
CCDC88C-212ENST00000556767 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.79■□□□□ 0.28
CCDC88C-212ENST00000556767 MED14O60244 1454 aa16.79■□□□□ 0.28
CCDC88C-212ENST00000556767 IQGAP1P46940 1657 aa16.78■□□□□ 0.28
CCDC88C-212ENST00000556767 RGL3Q3MIN7 710 aa16.77■□□□□ 0.28
CCDC88C-212ENST00000556767 ZFYVE9O95405 1425 aa16.77■□□□□ 0.27
CCDC88C-212ENST00000556767 ANKRD30BQ9BXX2 1392 aa16.75■□□□□ 0.27
CCDC88C-212ENST00000556767 ZNF335Q9H4Z2 1342 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-212ENST00000556767 SLC26A8Q96RN1 970 aa16.74■□□□□ 0.27
CCDC88C-212ENST00000556767 PLEKHG1Q9ULL1 1385 aa16.73■□□□□ 0.27
CCDC88C-212ENST00000556767 RPGRIP1LQ68CZ1 1315 aa16.71■□□□□ 0.27
CCDC88C-212ENST00000556767 NEXMIFQ5QGS0 1516 aa16.7■□□□□ 0.26
CCDC88C-212ENST00000556767 VGFO15240 615 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-212ENST00000556767 SPATA31E1Q6ZUB1 1445 aa16.7■□□□□ 0.26
CCDC88C-212ENST00000556767 DHX57Q6P158 1386 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-212ENST00000556767 CERKQ8TCT0 537 aa16.67■□□□□ 0.26
CCDC88C-212ENST00000556767 PPLO60437 1756 aa16.66■□□□□ 0.26
CCDC88C-212ENST00000556767 LTBP4Q8N2S1 1624 aa16.66■□□□□ 0.26
CCDC88C-212ENST00000556767 TBX22Q9Y458 520 aa16.65■□□□□ 0.26
CCDC88C-212ENST00000556767 ADAMTS13Q76LX8 1427 aa16.64■□□□□ 0.25
CCDC88C-212ENST00000556767 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
CCDC88C-212ENST00000556767 SIN3AQ96ST3 1273 aa16.63■□□□□ 0.25
CCDC88C-212ENST00000556767 KDM2AQ9Y2K7 1162 aa16.63■□□□□ 0.25
CCDC88C-212ENST00000556767 ADGRF5Q8IZF2 1346 aa16.63■□□□□ 0.25
CCDC88C-212ENST00000556767 CPS1P31327 1500 aa16.62■□□□□ 0.25
CCDC88C-212ENST00000556767 KCNA6P17658 529 aa16.62■□□□□ 0.25
CCDC88C-212ENST00000556767 DIP2AQ14689 1571 aa16.62■□□□□ 0.25
CCDC88C-212ENST00000556767 SETBP1Q9Y6X0 1596 aa16.62■□□□□ 0.25
CCDC88C-212ENST00000556767 DCAF11Q8TEB1 546 aa16.61■□□□□ 0.25
CCDC88C-212ENST00000556767 IFT172Q9UG01 1749 aa16.61■□□□□ 0.25
CCDC88C-212ENST00000556767 STRCP1A6NGW2 1772 aa16.61■□□□□ 0.25
CCDC88C-212ENST00000556767 NRXN3Q9Y4C0 1643 aa16.6■□□□□ 0.25
CCDC88C-212ENST00000556767 PROSER2Q86WR7 435 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-212ENST00000556767 METP08581 1390 aa16.57■□□□□ 0.24
CCDC88C-212ENST00000556767 PIK3R4Q99570 1358 aa16.57■□□□□ 0.24
CCDC88C-212ENST00000556767 AMOTL2Q9Y2J4 779 aa16.57■□□□□ 0.24
CCDC88C-212ENST00000556767 CHD2O14647 1828 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-212ENST00000556767 ALKQ9UM73 1620 aa16.56■□□□□ 0.24
CCDC88C-212ENST00000556767 MYOM2P54296 1465 aa16.56■□□□□ 0.24
CCDC88C-212ENST00000556767 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-212ENST00000556767 LRRC7Q96NW7 1537 aa16.55■□□□□ 0.24
CCDC88C-212ENST00000556767 NWD1Q149M9 1564 aa16.55■□□□□ 0.24
CCDC88C-212ENST00000556767 PIK3C2GO75747 1445 aa16.54■□□□□ 0.24
CCDC88C-212ENST00000556767 NKTRP30414 1462 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-212ENST00000556767 PTPRUQ92729 1446 aa16.53■□□□□ 0.24
CCDC88C-212ENST00000556767 CFAP70Q5T0N1 1121 aa16.53■□□□□ 0.24
CCDC88C-212ENST00000556767 C14orf37Q86TY3 774 aa16.53■□□□□ 0.24
CCDC88C-212ENST00000556767 STAC3Q96MF2 364 aa16.53■□□□□ 0.24
CCDC88C-212ENST00000556767 IQSEC2Q5JU85 1478 aa16.53■□□□□ 0.24
CCDC88C-212ENST00000556767 TMEM94Q12767 1356 aa16.52■□□□□ 0.24
CCDC88C-212ENST00000556767 TMEM132EQ6IEE7 984 aa16.52■□□□□ 0.24
CCDC88C-212ENST00000556767 L3MBTL2Q969R5 705 aa16.52■□□□□ 0.24
CCDC88C-212ENST00000556767 C14orf93Q9H972 538 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-212ENST00000556767 SETD1AO15047 1707 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-212ENST00000556767 NRXN1Q9ULB1 1477 aa16.51■□□□□ 0.23
CCDC88C-212ENST00000556767 UBAP1LF5GYI3 381 aa16.51■□□□□ 0.23
CCDC88C-212ENST00000556767 CCER1Q8TC90 406 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-212ENST00000556767 STK26Q9P289 416 aa16.51■□□□□ 0.23
CCDC88C-212ENST00000556767 FBXO41Q8TF61 875 aa16.5■□□□□ 0.23
CCDC88C-212ENST00000556767 TONSLQ96HA7 1378 aa16.5■□□□□ 0.23
CCDC88C-212ENST00000556767 XRN1Q8IZH2 1706 aaKnown RBP16.48■□□□□ 0.23
CCDC88C-212ENST00000556767 LAMC1P11047 1609 aa16.48■□□□□ 0.23
CCDC88C-212ENST00000556767 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-212ENST00000556767 TOM1O60784 492 aa16.47■□□□□ 0.23
CCDC88C-212ENST00000556767 XIRP1Q702N8 1843 aaKnown RBP16.47■□□□□ 0.23
CCDC88C-212ENST00000556767 MSH6P52701 1360 aa16.46■□□□□ 0.23
CCDC88C-212ENST00000556767 ASXL1Q8IXJ9 1541 aa16.45■□□□□ 0.22
CCDC88C-212ENST00000556767 PIP4K2BP78356 416 aa16.45■□□□□ 0.22
CCDC88C-212ENST00000556767 ILDR1Q86SU0 546 aaPredicted RBP16.45■□□□□ 0.22
CCDC88C-212ENST00000556767 LRPPRCP42704 1394 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-212ENST00000556767 YTHDC2Q9H6S0 1430 aaKnown RBP16.45■□□□□ 0.22
CCDC88C-212ENST00000556767 ROBO2Q9HCK4 1378 aa16.44■□□□□ 0.22
CCDC88C-212ENST00000556767 PRAG1Q86YV5 1406 aa16.44■□□□□ 0.22
CCDC88C-212ENST00000556767 CLSPNQ9HAW4 1339 aa16.43■□□□□ 0.22
CCDC88C-212ENST00000556767 PTCH1Q13635 1447 aa16.42■□□□□ 0.22
CCDC88C-212ENST00000556767 NCOA3Q9Y6Q9 1424 aa16.42■□□□□ 0.22
CCDC88C-212ENST00000556767 ABCC11Q96J66 1382 aa16.41■□□□□ 0.22
CCDC88C-212ENST00000556767 ATF3P18847 181 aa16.41■□□□□ 0.22
CCDC88C-212ENST00000556767 C19orf44Q9H6X5 657 aa16.41■□□□□ 0.22
CCDC88C-212ENST00000556767 WAPLQ7Z5K2 1190 aa16.4■□□□□ 0.22
CCDC88C-212ENST00000556767 TRAK1Q9UPV9 953 aa16.4■□□□□ 0.22
CCDC88C-212ENST00000556767 NBPF1Q3BBV0 1214 aa16.39■□□□□ 0.21
CCDC88C-212ENST00000556767 POGKQ9P215 609 aa16.39■□□□□ 0.21
CCDC88C-212ENST00000556767 KNDC1Q76NI1 1749 aa16.39■□□□□ 0.21
CCDC88C-212ENST00000556767 ADGRB1O14514 1584 aa16.38■□□□□ 0.21
CCDC88C-212ENST00000556767 TECPR2O15040 1411 aa16.38■□□□□ 0.21
CCDC88C-212ENST00000556767 SAFB2Q14151 953 aaKnown RBP eCLIP16.38■□□□□ 0.21
CCDC88C-212ENST00000556767 CADPS2Q86UW7 1296 aa16.38■□□□□ 0.21
CCDC88C-212ENST00000556767 KIAA1210Q9ULL0 1709 aa16.38■□□□□ 0.21
CCDC88C-212ENST00000556767 ADGRL3Q9HAR2 1447 aa16.37■□□□□ 0.21
CCDC88C-212ENST00000556767 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-212ENST00000556767 PRAM1Q96QH2 718 aa16.37■□□□□ 0.21
CCDC88C-212ENST00000556767 PLEKHH1Q9ULM0 1364 aa16.37■□□□□ 0.21
CCDC88C-212ENST00000556767 NBPF8Q3BBV2 869 aa16.36■□□□□ 0.21
CCDC88C-212ENST00000556767 NALCNQ8IZF0 1738 aa16.36■□□□□ 0.21
CCDC88C-212ENST00000556767 SIRT1Q96EB6 747 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms