RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CPS1P31327 1500 aa20.53■□□□□ 0.88
SHMT2-219ENST00000555563 RIMS2Q9UQ26 1411 aa20.53■□□□□ 0.88
SHMT2-219ENST00000555563 CHGAP10645 457 aaKnown RBP20.52■□□□□ 0.88
SHMT2-219ENST00000555563 STRCP1A6NGW2 1772 aa20.51■□□□□ 0.87
SHMT2-219ENST00000555563 RAB3GAP2Q9H2M9 1393 aa20.49■□□□□ 0.87
SHMT2-219ENST00000555563 PLEKHG1Q9ULL1 1385 aa20.46■□□□□ 0.87
SHMT2-219ENST00000555563 KIF1BO60333 1816 aa20.46■□□□□ 0.87
SHMT2-219ENST00000555563 PPP1R15AO75807 674 aaPredicted RBP20.45■□□□□ 0.86
SHMT2-219ENST00000555563 FOXD1Q16676 465 aa20.45■□□□□ 0.86
SHMT2-219ENST00000555563 UBAP1LF5GYI3 381 aa20.44■□□□□ 0.86
SHMT2-219ENST00000555563 MPHOSPH9Q99550 1183 aa20.44■□□□□ 0.86
SHMT2-219ENST00000555563 ACIN1Q9UKV3 1341 aaKnown RBP20.43■□□□□ 0.86
SHMT2-219ENST00000555563 NEXMIFQ5QGS0 1516 aa20.43■□□□□ 0.86
SHMT2-219ENST00000555563 NUTM2DQ5VT03 806 aaPredicted RBP20.42■□□□□ 0.86
SHMT2-219ENST00000555563 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.42■□□□□ 0.86
SHMT2-219ENST00000555563 SLC26A8Q96RN1 970 aa20.42■□□□□ 0.86
SHMT2-219ENST00000555563 SENP3Q9H4L4 574 aaPredicted RBP20.42■□□□□ 0.86
SHMT2-219ENST00000555563 LRRC7Q96NW7 1537 aa20.42■□□□□ 0.86
SHMT2-219ENST00000555563 HDGFP51858 240 aaKnown RBP20.41■□□□□ 0.86
SHMT2-219ENST00000555563 NWD1Q149M9 1564 aa20.41■□□□□ 0.86
SHMT2-219ENST00000555563 DIP2AQ14689 1571 aa20.4■□□□□ 0.86
SHMT2-219ENST00000555563 BCANQ96GW7 911 aa20.4■□□□□ 0.86
SHMT2-219ENST00000555563 NRXN3Q9Y4C0 1643 aa20.38■□□□□ 0.85
SHMT2-219ENST00000555563 CCDC144AA2RUR9 1427 aa20.38■□□□□ 0.85
SHMT2-219ENST00000555563 ADAMTS13Q76LX8 1427 aa20.38■□□□□ 0.85
SHMT2-219ENST00000555563 ZNF326Q5BKZ1 582 aaKnown RBP20.38■□□□□ 0.85
SHMT2-219ENST00000555563 SETBP1Q9Y6X0 1596 aa20.37■□□□□ 0.85
SHMT2-219ENST00000555563 XIRP1Q702N8 1843 aaKnown RBP20.35■□□□□ 0.85
SHMT2-219ENST00000555563 NKTRP30414 1462 aaKnown RBP20.35■□□□□ 0.85
SHMT2-219ENST00000555563 CHD2O14647 1828 aaKnown RBP20.34■□□□□ 0.85
SHMT2-219ENST00000555563 PPLO60437 1756 aa20.34■□□□□ 0.85
SHMT2-219ENST00000555563 KCNA6P17658 529 aa20.33■□□□□ 0.85
SHMT2-219ENST00000555563 ALKQ9UM73 1620 aa20.32■□□□□ 0.84
SHMT2-219ENST00000555563 SPATA31E1Q6ZUB1 1445 aa20.31■□□□□ 0.84
SHMT2-219ENST00000555563 HRCP23327 699 aa20.31■□□□□ 0.84
SHMT2-219ENST00000555563 TBX22Q9Y458 520 aa20.31■□□□□ 0.84
SHMT2-219ENST00000555563 IFT172Q9UG01 1749 aa20.29■□□□□ 0.84
SHMT2-219ENST00000555563 TOM1O60784 492 aa20.28■□□□□ 0.84
SHMT2-219ENST00000555563 TMEM94Q12767 1356 aa20.28■□□□□ 0.84
SHMT2-219ENST00000555563 PIK3R4Q99570 1358 aa20.28■□□□□ 0.84
SHMT2-219ENST00000555563 XRN1Q8IZH2 1706 aaKnown RBP20.27■□□□□ 0.83
SHMT2-219ENST00000555563 RPGRIP1LQ68CZ1 1315 aa20.27■□□□□ 0.83
SHMT2-219ENST00000555563 SCAF1Q9H7N4 1312 aaKnown RBP20.27■□□□□ 0.83
SHMT2-219ENST00000555563 PIP4K2BP78356 416 aa20.26■□□□□ 0.83
SHMT2-219ENST00000555563 SETD1AO15047 1707 aaKnown RBP20.26■□□□□ 0.83
SHMT2-219ENST00000555563 PTPRUQ92729 1446 aa20.26■□□□□ 0.83
SHMT2-219ENST00000555563 ANKRD30BQ9BXX2 1392 aa20.24■□□□□ 0.83
SHMT2-219ENST00000555563 PROSER2Q86WR7 435 aaPredicted RBP20.24■□□□□ 0.83
SHMT2-219ENST00000555563 METP08581 1390 aa20.23■□□□□ 0.83
SHMT2-219ENST00000555563 VGFO15240 615 aaPredicted RBP20.23■□□□□ 0.83
SHMT2-219ENST00000555563 HSPA1LP34931 641 aa20.23■□□□□ 0.83
SHMT2-219ENST00000555563 RBM33Q96EV2 1170 aaKnown RBP20.23■□□□□ 0.83
SHMT2-219ENST00000555563 RGL3Q3MIN7 710 aa20.22■□□□□ 0.83
SHMT2-219ENST00000555563 AMOTL2Q9Y2J4 779 aa20.18■□□□□ 0.82
SHMT2-219ENST00000555563 ADGRF5Q8IZF2 1346 aa20.18■□□□□ 0.82
SHMT2-219ENST00000555563 MYOM2P54296 1465 aa20.17■□□□□ 0.82
SHMT2-219ENST00000555563 MSH6P52701 1360 aa20.16■□□□□ 0.82
SHMT2-219ENST00000555563 PIK3C2GO75747 1445 aa20.16■□□□□ 0.82
SHMT2-219ENST00000555563 NCOA3Q9Y6Q9 1424 aa20.15■□□□□ 0.82
SHMT2-219ENST00000555563 ASXL1Q8IXJ9 1541 aa20.13■□□□□ 0.81
SHMT2-219ENST00000555563 NRXN1Q9ULB1 1477 aa20.13■□□□□ 0.81
SHMT2-219ENST00000555563 PRAG1Q86YV5 1406 aa20.12■□□□□ 0.81
SHMT2-219ENST00000555563 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.12■□□□□ 0.81
SHMT2-219ENST00000555563 PTCH1Q13635 1447 aa20.11■□□□□ 0.81
SHMT2-219ENST00000555563 LAMC1P11047 1609 aa20.1■□□□□ 0.81
SHMT2-219ENST00000555563 C14orf37Q86TY3 774 aa20.1■□□□□ 0.81
SHMT2-219ENST00000555563 NALCNQ8IZF0 1738 aa20.1■□□□□ 0.81
SHMT2-219ENST00000555563 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
SHMT2-219ENST00000555563 TRIM26Q12899 539 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-219ENST00000555563 ROBO2Q9HCK4 1378 aa20.08■□□□□ 0.8
SHMT2-219ENST00000555563 DCCP43146 1447 aa20.06■□□□□ 0.8
SHMT2-219ENST00000555563 FAM135BQ49AJ0 1406 aa20.06■□□□□ 0.8
SHMT2-219ENST00000555563 KNDC1Q76NI1 1749 aa20.06■□□□□ 0.8
SHMT2-219ENST00000555563 PHF23Q9BUL5 403 aaPredicted RBP20.06■□□□□ 0.8
SHMT2-219ENST00000555563 ADGRL3Q9HAR2 1447 aa20.06■□□□□ 0.8
SHMT2-219ENST00000555563 C19orf44Q9H6X5 657 aa20.05■□□□□ 0.8
SHMT2-219ENST00000555563 MED1Q15648 1581 aaPredicted RBP20.04■□□□□ 0.8
SHMT2-219ENST00000555563 TECPR2O15040 1411 aa20.04■□□□□ 0.8
SHMT2-219ENST00000555563 DHX57Q6P158 1386 aaKnown RBP20.04■□□□□ 0.8
SHMT2-219ENST00000555563 LRPPRCP42704 1394 aaKnown RBP20.03■□□□□ 0.8
SHMT2-219ENST00000555563 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.8
SHMT2-219ENST00000555563 SLAIN2Q9P270 581 aa20.02■□□□□ 0.8
SHMT2-219ENST00000555563 ATF3P18847 181 aa20.01■□□□□ 0.79
SHMT2-219ENST00000555563 TMEM132EQ6IEE7 984 aa20.01■□□□□ 0.79
SHMT2-219ENST00000555563 DCAF11Q8TEB1 546 aa20.01■□□□□ 0.79
SHMT2-219ENST00000555563 C14orf93Q9H972 538 aaKnown RBP20.01■□□□□ 0.79
SHMT2-219ENST00000555563 YTHDC2Q9H6S0 1430 aaKnown RBP20.01■□□□□ 0.79
SHMT2-219ENST00000555563 CFAP70Q5T0N1 1121 aa20■□□□□ 0.79
SHMT2-219ENST00000555563 ADGRB1O14514 1584 aa20■□□□□ 0.79
SHMT2-219ENST00000555563 STK26Q9P289 416 aa19.99■□□□□ 0.79
SHMT2-219ENST00000555563 KDM2AQ9Y2K7 1162 aa19.99■□□□□ 0.79
SHMT2-219ENST00000555563 MST1RQ04912 1400 aa19.99■□□□□ 0.79
SHMT2-219ENST00000555563 ABCC11Q96J66 1382 aa19.98■□□□□ 0.79
SHMT2-219ENST00000555563 PHLPP1O60346 1717 aa19.96■□□□□ 0.79
SHMT2-219ENST00000555563 CDC42BPGQ6DT37 1551 aa19.96■□□□□ 0.79
SHMT2-219ENST00000555563 STAC3Q96MF2 364 aa19.95■□□□□ 0.78
SHMT2-219ENST00000555563 PLEKHH1Q9ULM0 1364 aa19.95■□□□□ 0.78
SHMT2-219ENST00000555563 AHDC1Q5TGY3 1603 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-219ENST00000555563 COL16A1Q07092 1604 aaPredicted RBP19.93■□□□□ 0.78
SHMT2-219ENST00000555563 DLC1Q96QB1 1528 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms