RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PLEKHG1Q9ULL1 1385 aa30.7■■■□□ 2.51
VTI1B-205ENST00000555543 SLC26A8Q96RN1 970 aa30.7■■■□□ 2.51
VTI1B-205ENST00000555543 SENP3Q9H4L4 574 aaPredicted RBP30.7■■■□□ 2.51
VTI1B-205ENST00000555543 SETD5Q9C0A6 1442 aa30.7■■■□□ 2.5
VTI1B-205ENST00000555543 LRRC7Q96NW7 1537 aa30.69■■■□□ 2.5
VTI1B-205ENST00000555543 PPP1R15AO75807 674 aaPredicted RBP30.68■■■□□ 2.5
VTI1B-205ENST00000555543 NUTM2DQ5VT03 806 aaPredicted RBP30.68■■■□□ 2.5
VTI1B-205ENST00000555543 UBAP1LF5GYI3 381 aa30.64■■■□□ 2.5
VTI1B-205ENST00000555543 HDGFP51858 240 aaKnown RBP30.64■■■□□ 2.5
VTI1B-205ENST00000555543 FOXD1Q16676 465 aa30.64■■■□□ 2.5
VTI1B-205ENST00000555543 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.64■■■□□ 2.5
VTI1B-205ENST00000555543 BCANQ96GW7 911 aa30.63■■■□□ 2.49
VTI1B-205ENST00000555543 RAB3GAP2Q9H2M9 1393 aa30.62■■■□□ 2.49
VTI1B-205ENST00000555543 KIF1BO60333 1816 aa30.6■■■□□ 2.49
VTI1B-205ENST00000555543 NWD1Q149M9 1564 aa30.6■■■□□ 2.49
VTI1B-205ENST00000555543 MPHOSPH9Q99550 1183 aa30.6■■■□□ 2.49
VTI1B-205ENST00000555543 ADAMTS13Q76LX8 1427 aa30.59■■■□□ 2.49
VTI1B-205ENST00000555543 ALKQ9UM73 1620 aa30.58■■■□□ 2.49
VTI1B-205ENST00000555543 XIRP1Q702N8 1843 aaKnown RBP30.58■■■□□ 2.49
VTI1B-205ENST00000555543 NEXMIFQ5QGS0 1516 aa30.57■■■□□ 2.49
VTI1B-205ENST00000555543 KCNA6P17658 529 aa30.57■■■□□ 2.48
VTI1B-205ENST00000555543 ZNF326Q5BKZ1 582 aaKnown RBP30.57■■■□□ 2.48
VTI1B-205ENST00000555543 NRXN3Q9Y4C0 1643 aa30.55■■■□□ 2.48
VTI1B-205ENST00000555543 DIP2AQ14689 1571 aa30.54■■■□□ 2.48
VTI1B-205ENST00000555543 CHD2O14647 1828 aaKnown RBP30.52■■■□□ 2.48
VTI1B-205ENST00000555543 NKTRP30414 1462 aaKnown RBP30.52■■■□□ 2.48
VTI1B-205ENST00000555543 TBX22Q9Y458 520 aa30.52■■■□□ 2.48
VTI1B-205ENST00000555543 SETBP1Q9Y6X0 1596 aa30.51■■■□□ 2.47
VTI1B-205ENST00000555543 ACIN1Q9UKV3 1341 aaKnown RBP30.49■■■□□ 2.47
VTI1B-205ENST00000555543 TOM1O60784 492 aa30.49■■■□□ 2.47
VTI1B-205ENST00000555543 TMEM94Q12767 1356 aa30.49■■■□□ 2.47
VTI1B-205ENST00000555543 CCDC144AA2RUR9 1427 aa30.47■■■□□ 2.47
VTI1B-205ENST00000555543 PIP4K2BP78356 416 aa30.46■■■□□ 2.47
VTI1B-205ENST00000555543 RBM33Q96EV2 1170 aaKnown RBP30.45■■■□□ 2.47
VTI1B-205ENST00000555543 PROSER2Q86WR7 435 aaPredicted RBP30.44■■■□□ 2.46
VTI1B-205ENST00000555543 SCAF1Q9H7N4 1312 aaKnown RBP30.44■■■□□ 2.46
VTI1B-205ENST00000555543 PIK3R4Q99570 1358 aa30.42■■■□□ 2.46
VTI1B-205ENST00000555543 PTPRUQ92729 1446 aa30.42■■■□□ 2.46
VTI1B-205ENST00000555543 PPLO60437 1756 aa30.42■■■□□ 2.46
VTI1B-205ENST00000555543 SPATA31E1Q6ZUB1 1445 aa30.41■■■□□ 2.46
VTI1B-205ENST00000555543 RPGRIP1LQ68CZ1 1315 aa30.38■■■□□ 2.45
VTI1B-205ENST00000555543 METP08581 1390 aa30.37■■■□□ 2.45
VTI1B-205ENST00000555543 XRN1Q8IZH2 1706 aaKnown RBP30.36■■■□□ 2.45
VTI1B-205ENST00000555543 VGFO15240 615 aaPredicted RBP30.34■■■□□ 2.45
VTI1B-205ENST00000555543 HRCP23327 699 aa30.34■■■□□ 2.45
VTI1B-205ENST00000555543 SETD1AO15047 1707 aaKnown RBP30.33■■■□□ 2.45
VTI1B-205ENST00000555543 AMOTL2Q9Y2J4 779 aa30.33■■■□□ 2.45
VTI1B-205ENST00000555543 RGL3Q3MIN7 710 aa30.32■■■□□ 2.44
VTI1B-205ENST00000555543 IFT172Q9UG01 1749 aa30.32■■■□□ 2.44
VTI1B-205ENST00000555543 HSPA1LP34931 641 aa30.31■■■□□ 2.44
VTI1B-205ENST00000555543 MSH6P52701 1360 aa30.28■■■□□ 2.44
VTI1B-205ENST00000555543 ANKRD30BQ9BXX2 1392 aa30.28■■■□□ 2.44
VTI1B-205ENST00000555543 NCOA3Q9Y6Q9 1424 aa30.27■■■□□ 2.44
VTI1B-205ENST00000555543 ADGRF5Q8IZF2 1346 aa30.25■■■□□ 2.43
VTI1B-205ENST00000555543 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.21■■■□□ 2.43
VTI1B-205ENST00000555543 C14orf37Q86TY3 774 aa30.2■■■□□ 2.43
VTI1B-205ENST00000555543 FAM135BQ49AJ0 1406 aa30.2■■■□□ 2.42
VTI1B-205ENST00000555543 ROBO1Q9Y6N7 1651 aa30.2■■■□□ 2.42
VTI1B-205ENST00000555543 PIK3C2GO75747 1445 aa30.17■■■□□ 2.42
VTI1B-205ENST00000555543 C19orf44Q9H6X5 657 aa30.15■■■□□ 2.42
VTI1B-205ENST00000555543 PTCH1Q13635 1447 aa30.14■■■□□ 2.42
VTI1B-205ENST00000555543 PRAG1Q86YV5 1406 aa30.14■■■□□ 2.42
VTI1B-205ENST00000555543 ASXL1Q8IXJ9 1541 aa30.14■■■□□ 2.42
VTI1B-205ENST00000555543 SLAIN2Q9P270 581 aa30.14■■■□□ 2.42
VTI1B-205ENST00000555543 MYOM2P54296 1465 aa30.13■■■□□ 2.41
VTI1B-205ENST00000555543 ROBO2Q9HCK4 1378 aa30.13■■■□□ 2.41
VTI1B-205ENST00000555543 NRXN1Q9ULB1 1477 aa30.12■■■□□ 2.41
VTI1B-205ENST00000555543 NALCNQ8IZF0 1738 aa30.12■■■□□ 2.41
VTI1B-205ENST00000555543 DCCP43146 1447 aa30.1■■■□□ 2.41
VTI1B-205ENST00000555543 ADGRL3Q9HAR2 1447 aa30.1■■■□□ 2.41
VTI1B-205ENST00000555543 CADPS2Q86UW7 1296 aa30.08■■■□□ 2.41
VTI1B-205ENST00000555543 ATF3P18847 181 aa30.07■■■□□ 2.4
VTI1B-205ENST00000555543 DISP3Q9P2K9 1392 aa30.05■■■□□ 2.4
VTI1B-205ENST00000555543 TMEM132EQ6IEE7 984 aa30.03■■■□□ 2.4
VTI1B-205ENST00000555543 TECPR2O15040 1411 aa30.02■■■□□ 2.4
VTI1B-205ENST00000555543 MST1RQ04912 1400 aa30.02■■■□□ 2.4
VTI1B-205ENST00000555543 MED1Q15648 1581 aaPredicted RBP30.02■■■□□ 2.4
VTI1B-205ENST00000555543 LRPPRCP42704 1394 aaKnown RBP30.02■■■□□ 2.4
VTI1B-205ENST00000555543 LAMC1P11047 1609 aa30.01■■■□□ 2.39
VTI1B-205ENST00000555543 KNDC1Q76NI1 1749 aa30■■■□□ 2.39
VTI1B-205ENST00000555543 C14orf93Q9H972 538 aaKnown RBP30■■■□□ 2.39
VTI1B-205ENST00000555543 DHX57Q6P158 1386 aaKnown RBP30■■■□□ 2.39
VTI1B-205ENST00000555543 CFAP70Q5T0N1 1121 aa29.99■■■□□ 2.39
VTI1B-205ENST00000555543 STK26Q9P289 416 aa29.99■■■□□ 2.39
VTI1B-205ENST00000555543 PHLPP1O60346 1717 aa29.99■■■□□ 2.39
VTI1B-205ENST00000555543 YTHDC2Q9H6S0 1430 aaKnown RBP29.97■■■□□ 2.39
VTI1B-205ENST00000555543 ABCC11Q96J66 1382 aa29.97■■■□□ 2.39
VTI1B-205ENST00000555543 DCAF11Q8TEB1 546 aa29.96■■■□□ 2.39
VTI1B-205ENST00000555543 BRINP3Q76B58 766 aa29.95■■■□□ 2.39
VTI1B-205ENST00000555543 COL16A1Q07092 1604 aaPredicted RBP29.94■■■□□ 2.38
VTI1B-205ENST00000555543 AHDC1Q5TGY3 1603 aaPredicted RBP29.94■■■□□ 2.38
VTI1B-205ENST00000555543 KDM2AQ9Y2K7 1162 aa29.94■■■□□ 2.38
VTI1B-205ENST00000555543 PLEKHH1Q9ULM0 1364 aa29.92■■■□□ 2.38
VTI1B-205ENST00000555543 ADGRB1O14514 1584 aa29.91■■■□□ 2.38
VTI1B-205ENST00000555543 WAPLQ7Z5K2 1190 aa29.91■■■□□ 2.38
VTI1B-205ENST00000555543 CDC42BPGQ6DT37 1551 aa29.9■■■□□ 2.38
VTI1B-205ENST00000555543 C1orf167Q5SNV9 1468 aa29.89■■■□□ 2.38
VTI1B-205ENST00000555543 TRIM26Q12899 539 aaPredicted RBP29.89■■■□□ 2.38
VTI1B-205ENST00000555543 NHSL1Q5SYE7 1610 aa29.85■■■□□ 2.37
VTI1B-205ENST00000555543 STAC3Q96MF2 364 aa29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms