RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 CPS1P31327 1500 aa15.96■□□□□ 0.15
SHMT2-213ENST00000554600 PPP1R15AO75807 674 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-213ENST00000554600 RIMS2Q9UQ26 1411 aa15.94■□□□□ 0.14
SHMT2-213ENST00000554600 SLC4A1APQ9BWU0 796 aaKnown RBP15.94■□□□□ 0.14
SHMT2-213ENST00000554600 HDGFP51858 240 aaKnown RBP15.93■□□□□ 0.14
SHMT2-213ENST00000554600 CLTCL1P53675 1640 aa15.93■□□□□ 0.14
SHMT2-213ENST00000554600 TRPM2O94759 1503 aa15.91■□□□□ 0.14
SHMT2-213ENST00000554600 UBAP1LF5GYI3 381 aa15.91■□□□□ 0.14
SHMT2-213ENST00000554600 NUTM2DQ5VT03 806 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-213ENST00000554600 SLC26A8Q96RN1 970 aa15.91■□□□□ 0.14
SHMT2-213ENST00000554600 ZNF326Q5BKZ1 582 aaKnown RBP15.9■□□□□ 0.14
SHMT2-213ENST00000554600 ZFYVE9O95405 1425 aa15.9■□□□□ 0.14
SHMT2-213ENST00000554600 SETD5Q9C0A6 1442 aa15.89■□□□□ 0.13
SHMT2-213ENST00000554600 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.89■□□□□ 0.13
SHMT2-213ENST00000554600 XIRP1Q702N8 1843 aaKnown RBP15.89■□□□□ 0.13
SHMT2-213ENST00000554600 CHD2O14647 1828 aaKnown RBP15.88■□□□□ 0.13
SHMT2-213ENST00000554600 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
SHMT2-213ENST00000554600 PLEKHG1Q9ULL1 1385 aa15.87■□□□□ 0.13
SHMT2-213ENST00000554600 LRRC7Q96NW7 1537 aa15.86■□□□□ 0.13
SHMT2-213ENST00000554600 FOXD1Q16676 465 aa15.85■□□□□ 0.13
SHMT2-213ENST00000554600 PIP4K2BP78356 416 aa15.83■□□□□ 0.12
SHMT2-213ENST00000554600 MPHOSPH9Q99550 1183 aa15.83■□□□□ 0.12
SHMT2-213ENST00000554600 RAB3GAP2Q9H2M9 1393 aa15.83■□□□□ 0.12
SHMT2-213ENST00000554600 TOM1O60784 492 aa15.82■□□□□ 0.12
SHMT2-213ENST00000554600 ACIN1Q9UKV3 1341 aaKnown RBP15.82■□□□□ 0.12
SHMT2-213ENST00000554600 DIP2AQ14689 1571 aa15.82■□□□□ 0.12
SHMT2-213ENST00000554600 PPLO60437 1756 aa15.81■□□□□ 0.12
SHMT2-213ENST00000554600 KCNA6P17658 529 aa15.81■□□□□ 0.12
SHMT2-213ENST00000554600 NWD1Q149M9 1564 aa15.81■□□□□ 0.12
SHMT2-213ENST00000554600 PROSER2Q86WR7 435 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-213ENST00000554600 NEXMIFQ5QGS0 1516 aa15.8■□□□□ 0.12
SHMT2-213ENST00000554600 CCDC144AA2RUR9 1427 aa15.79■□□□□ 0.12
SHMT2-213ENST00000554600 NRXN3Q9Y4C0 1643 aa15.79■□□□□ 0.12
SHMT2-213ENST00000554600 NKTRP30414 1462 aaKnown RBP15.78■□□□□ 0.12
SHMT2-213ENST00000554600 ADAMTS13Q76LX8 1427 aa15.78■□□□□ 0.12
SHMT2-213ENST00000554600 TBX22Q9Y458 520 aa15.78■□□□□ 0.12
SHMT2-213ENST00000554600 TMEM94Q12767 1356 aa15.77■□□□□ 0.12
SHMT2-213ENST00000554600 RBM33Q96EV2 1170 aaKnown RBP15.77■□□□□ 0.12
SHMT2-213ENST00000554600 SETBP1Q9Y6X0 1596 aa15.76■□□□□ 0.11
SHMT2-213ENST00000554600 ALKQ9UM73 1620 aa15.75■□□□□ 0.11
SHMT2-213ENST00000554600 RGL3Q3MIN7 710 aa15.74■□□□□ 0.11
SHMT2-213ENST00000554600 C14orf37Q86TY3 774 aa15.74■□□□□ 0.11
SHMT2-213ENST00000554600 IFT172Q9UG01 1749 aa15.74■□□□□ 0.11
SHMT2-213ENST00000554600 PIK3R4Q99570 1358 aa15.73■□□□□ 0.11
SHMT2-213ENST00000554600 VGFO15240 615 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-213ENST00000554600 MSH6P52701 1360 aa15.72■□□□□ 0.11
SHMT2-213ENST00000554600 RPGRIP1LQ68CZ1 1315 aa15.71■□□□□ 0.11
SHMT2-213ENST00000554600 AMOTL2Q9Y2J4 779 aa15.71■□□□□ 0.11
SHMT2-213ENST00000554600 XRN1Q8IZH2 1706 aaKnown RBP15.71■□□□□ 0.1
SHMT2-213ENST00000554600 SETD1AO15047 1707 aaKnown RBP15.7■□□□□ 0.1
SHMT2-213ENST00000554600 HSPA1LP34931 641 aa15.69■□□□□ 0.1
SHMT2-213ENST00000554600 PTPRUQ92729 1446 aa15.68■□□□□ 0.1
SHMT2-213ENST00000554600 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-213ENST00000554600 SPATA31E1Q6ZUB1 1445 aa15.68■□□□□ 0.1
SHMT2-213ENST00000554600 ROBO1Q9Y6N7 1651 aa15.67■□□□□ 0.1
SHMT2-213ENST00000554600 METP08581 1390 aa15.67■□□□□ 0.1
SHMT2-213ENST00000554600 HRCP23327 699 aa15.66■□□□□ 0.1
SHMT2-213ENST00000554600 ANKRD30BQ9BXX2 1392 aa15.64■□□□□ 0.09
SHMT2-213ENST00000554600 ADGRF5Q8IZF2 1346 aa15.64■□□□□ 0.09
SHMT2-213ENST00000554600 NCOA3Q9Y6Q9 1424 aa15.63■□□□□ 0.09
SHMT2-213ENST00000554600 ATF3P18847 181 aa15.63■□□□□ 0.09
SHMT2-213ENST00000554600 NALCNQ8IZF0 1738 aa15.63■□□□□ 0.09
SHMT2-213ENST00000554600 C19orf44Q9H6X5 657 aa15.62■□□□□ 0.09
SHMT2-213ENST00000554600 PHLPP1O60346 1717 aa15.61■□□□□ 0.09
SHMT2-213ENST00000554600 SLAIN2Q9P270 581 aa15.61■□□□□ 0.09
SHMT2-213ENST00000554600 CADPS2Q86UW7 1296 aa15.6■□□□□ 0.09
SHMT2-213ENST00000554600 FAM135BQ49AJ0 1406 aa15.6■□□□□ 0.09
SHMT2-213ENST00000554600 MED1Q15648 1581 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-213ENST00000554600 LAMC1P11047 1609 aa15.58■□□□□ 0.09
SHMT2-213ENST00000554600 STK26Q9P289 416 aa15.58■□□□□ 0.08
SHMT2-213ENST00000554600 PIK3C2GO75747 1445 aa15.57■□□□□ 0.08
SHMT2-213ENST00000554600 KNDC1Q76NI1 1749 aa15.57■□□□□ 0.08
SHMT2-213ENST00000554600 TMEM132EQ6IEE7 984 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 KDM2AQ9Y2K7 1162 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 ROBO2Q9HCK4 1378 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 PTCH1Q13635 1447 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 ADGRL3Q9HAR2 1447 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 MYOM2P54296 1465 aa15.56■□□□□ 0.08
SHMT2-213ENST00000554600 DCCP43146 1447 aa15.55■□□□□ 0.08
SHMT2-213ENST00000554600 PHF23Q9BUL5 403 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-213ENST00000554600 ASXL1Q8IXJ9 1541 aa15.54■□□□□ 0.08
SHMT2-213ENST00000554600 DCAF11Q8TEB1 546 aa15.54■□□□□ 0.08
SHMT2-213ENST00000554600 CFAP70Q5T0N1 1121 aa15.52■□□□□ 0.08
SHMT2-213ENST00000554600 NRXN1Q9ULB1 1477 aa15.52■□□□□ 0.07
SHMT2-213ENST00000554600 LRPPRCP42704 1394 aaKnown RBP15.51■□□□□ 0.07
SHMT2-213ENST00000554600 C14orf93Q9H972 538 aaKnown RBP15.51■□□□□ 0.07
SHMT2-213ENST00000554600 MST1RQ04912 1400 aa15.51■□□□□ 0.07
SHMT2-213ENST00000554600 YTHDC2Q9H6S0 1430 aaKnown RBP15.51■□□□□ 0.07
SHMT2-213ENST00000554600 PRAG1Q86YV5 1406 aa15.5■□□□□ 0.07
SHMT2-213ENST00000554600 COL16A1Q07092 1604 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-213ENST00000554600 DHX57Q6P158 1386 aaKnown RBP15.49■□□□□ 0.07
SHMT2-213ENST00000554600 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-213ENST00000554600 WAPLQ7Z5K2 1190 aa15.49■□□□□ 0.07
SHMT2-213ENST00000554600 NHSL1Q5SYE7 1610 aa15.48■□□□□ 0.07
SHMT2-213ENST00000554600 AHDC1Q5TGY3 1603 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-213ENST00000554600 BRINP3Q76B58 766 aa15.48■□□□□ 0.07
SHMT2-213ENST00000554600 TECPR2O15040 1411 aa15.48■□□□□ 0.07
SHMT2-213ENST00000554600 ABCC11Q96J66 1382 aa15.48■□□□□ 0.07
SHMT2-213ENST00000554600 RGPD8O14715 1765 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-213ENST00000554600 CDC42BPGQ6DT37 1551 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms