RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 HRO43593 1189 aa9.82□□□□□ -0.84
VPS33B-203ENST00000554264 PADI6Q6TGC4 694 aa9.82□□□□□ -0.84
VPS33B-203ENST00000554264 BHMG1C9JSJ3 638 aaPredicted RBP9.81□□□□□ -0.84
VPS33B-203ENST00000554264 HIC1Q14526 733 aa9.81□□□□□ -0.84
VPS33B-203ENST00000554264 KIAA1468Q9P260 1216 aa9.81□□□□□ -0.84
VPS33B-203ENST00000554264 GNPATO15228 680 aa9.8□□□□□ -0.84
VPS33B-203ENST00000554264 TDRD9Q8NDG6 1382 aaKnown RBP9.79□□□□□ -0.84
VPS33B-203ENST00000554264 ONECUT3O60422 494 aaPredicted RBP9.79□□□□□ -0.84
VPS33B-203ENST00000554264 FAM161AQ3B820 660 aa9.79□□□□□ -0.84
VPS33B-203ENST00000554264 SOGA1O94964 1423 aa9.79□□□□□ -0.84
VPS33B-203ENST00000554264 WDR97A6NE52 1622 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 CLASP1Q7Z460 1538 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 ZMYND10O75800 440 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 CHMP7Q8WUX9 453 aaPredicted RBP9.78□□□□□ -0.84
VPS33B-203ENST00000554264 RBM27Q9P2N5 1060 aaKnown RBP9.78□□□□□ -0.84
VPS33B-203ENST00000554264 RABGEF1Q9UJ41 708 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 SNAPC4Q5SXM2 1469 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 RAD54L2Q9Y4B4 1467 aa9.78□□□□□ -0.84
VPS33B-203ENST00000554264 SYNJ1O43426 1573 aa9.77□□□□□ -0.85
VPS33B-203ENST00000554264 SMAPO00193 183 aa9.76□□□□□ -0.85
VPS33B-203ENST00000554264 SPNS2Q8IVW8 549 aa9.76□□□□□ -0.85
VPS33B-203ENST00000554264 MAGI1Q96QZ7 1491 aaPredicted RBP9.76□□□□□ -0.85
VPS33B-203ENST00000554264 BARGINQ6ZT62 677 aa9.75□□□□□ -0.85
VPS33B-203ENST00000554264 TATDN2Q93075 761 aa9.75□□□□□ -0.85
VPS33B-203ENST00000554264 GRIN2BQ13224 1484 aa9.74□□□□□ -0.85
VPS33B-203ENST00000554264 NUDT18Q6ZVK8 323 aa9.74□□□□□ -0.85
VPS33B-203ENST00000554264 PACS2Q86VP3 889 aa9.74□□□□□ -0.85
VPS33B-203ENST00000554264 SEPT9Q9UHD8 586 aaPredicted RBP9.74□□□□□ -0.85
VPS33B-203ENST00000554264 ADGRG1Q9Y653 693 aa9.74□□□□□ -0.85
VPS33B-203ENST00000554264 SYNJ2O15056 1496 aa9.73□□□□□ -0.85
VPS33B-203ENST00000554264 FGD5Q6ZNL6 1462 aa9.73□□□□□ -0.85
VPS33B-203ENST00000554264 EYA1Q99502 592 aa9.73□□□□□ -0.85
VPS33B-203ENST00000554264 PNMA3Q9UL41 463 aa9.73□□□□□ -0.85
VPS33B-203ENST00000554264 PHOX2BQ99453 314 aa9.71□□□□□ -0.86
VPS33B-203ENST00000554264 GAPVD1Q14C86 1478 aa9.71□□□□□ -0.86
VPS33B-203ENST00000554264 IRF6O14896 467 aa9.7□□□□□ -0.86
VPS33B-203ENST00000554264 MAP2K5Q13163 448 aa9.7□□□□□ -0.86
VPS33B-203ENST00000554264 PRKCSHP14314 528 aaPredicted RBP9.69□□□□□ -0.86
VPS33B-203ENST00000554264 TPRNQ4KMQ1 711 aa9.69□□□□□ -0.86
VPS33B-203ENST00000554264 CUX1P39880 1505 aa9.68□□□□□ -0.86
VPS33B-203ENST00000554264 MINK1Q8N4C8 1332 aaPredicted RBP9.68□□□□□ -0.86
VPS33B-203ENST00000554264 MRPL50Q8N5N7 158 aaKnown RBP9.68□□□□□ -0.86
VPS33B-203ENST00000554264 PXYLP1Q8TE99 480 aa9.68□□□□□ -0.86
VPS33B-203ENST00000554264 NBPF3Q9H094 633 aa9.68□□□□□ -0.86
VPS33B-203ENST00000554264 NBPF26B4DH59 902 aa9.67□□□□□ -0.86
VPS33B-203ENST00000554264 METTL3Q86U44 580 aaKnown RBP9.67□□□□□ -0.86
VPS33B-203ENST00000554264 CCDC102AQ96A19 550 aa9.67□□□□□ -0.86
VPS33B-203ENST00000554264 SLC24A3Q9HC58 644 aa9.67□□□□□ -0.86
VPS33B-203ENST00000554264 FAM98CQ17RN3 349 aaKnown RBP9.66□□□□□ -0.86
VPS33B-203ENST00000554264 LAPTM4BQ86VI4 370 aa9.66□□□□□ -0.86
VPS33B-203ENST00000554264 KRI1Q8N9T8 703 aaKnown RBP9.66□□□□□ -0.86
VPS33B-203ENST00000554264 NLRP7Q8WX94 980 aa9.66□□□□□ -0.86
VPS33B-203ENST00000554264 ZFRQ96KR1 1074 aaKnown RBP9.66□□□□□ -0.86
VPS33B-203ENST00000554264 OATP04181 439 aa9.65□□□□□ -0.86
VPS33B-203ENST00000554264 MMRN1Q13201 1228 aa9.65□□□□□ -0.86
VPS33B-203ENST00000554264 MYT1LQ9UL68 1186 aa9.65□□□□□ -0.86
VPS33B-203ENST00000554264 RCCD1A6NED2 376 aa9.64□□□□□ -0.87
VPS33B-203ENST00000554264 RBM46Q8TBY0 533 aaKnown RBP9.64□□□□□ -0.87
VPS33B-203ENST00000554264 STAC3Q96MF2 364 aa9.64□□□□□ -0.87
VPS33B-203ENST00000554264 PBRM1Q86U86 1689 aa9.63□□□□□ -0.87
VPS33B-203ENST00000554264 ABCA10Q8WWZ4 1543 aa9.62□□□□□ -0.87
VPS33B-203ENST00000554264 SAMD7Q7Z3H4 446 aa9.61□□□□□ -0.87
VPS33B-203ENST00000554264 KCTD12Q96CX2 325 aaKnown RBP9.61□□□□□ -0.87
VPS33B-203ENST00000554264 ABCA5Q8WWZ7 1642 aa9.6□□□□□ -0.87
VPS33B-203ENST00000554264 GRIN2AQ12879 1464 aa9.6□□□□□ -0.87
VPS33B-203ENST00000554264 SWT1Q5T5J6 900 aaKnown RBP9.6□□□□□ -0.87
VPS33B-203ENST00000554264 WNT2BQ93097 391 aa9.6□□□□□ -0.87
VPS33B-203ENST00000554264 TMEM134Q9H6X4 195 aa9.6□□□□□ -0.87
VPS33B-203ENST00000554264 GOLGA8CPA6NN73 597 aa9.59□□□□□ -0.87
VPS33B-203ENST00000554264 TRIM66O15016 1216 aa9.59□□□□□ -0.87
VPS33B-203ENST00000554264 BCAMP50895 628 aa9.59□□□□□ -0.87
VPS33B-203ENST00000554264 AK7Q96M32 723 aa9.59□□□□□ -0.87
VPS33B-203ENST00000554264 REPIN1Q9BWE0 567 aaKnown RBP9.59□□□□□ -0.87
VPS33B-203ENST00000554264 NUP160Q12769 1436 aa9.58□□□□□ -0.88
VPS33B-203ENST00000554264 DNAJB2P25686 324 aa9.58□□□□□ -0.88
VPS33B-203ENST00000554264 CEP170Q5SW79 1584 aa9.58□□□□□ -0.88
VPS33B-203ENST00000554264 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.57□□□□□ -0.88
VPS33B-203ENST00000554264 SOWAHBA6NEL2 793 aa9.57□□□□□ -0.88
VPS33B-203ENST00000554264 THSD4Q6ZMP0 1018 aa9.57□□□□□ -0.88
VPS33B-203ENST00000554264 RNF166Q96A37 237 aaPredicted RBP9.57□□□□□ -0.88
VPS33B-203ENST00000554264 ERCC6L2Q5T890 1561 aa9.57□□□□□ -0.88
VPS33B-203ENST00000554264 ADAMTS12P58397 1594 aa9.56□□□□□ -0.88
VPS33B-203ENST00000554264 ANKK1Q8NFD2 765 aa9.56□□□□□ -0.88
VPS33B-203ENST00000554264 TMUB1Q9BVT8 246 aa9.56□□□□□ -0.88
VPS33B-203ENST00000554264 WRNQ14191 1432 aaPredicted RBP eCLIP9.56□□□□□ -0.88
VPS33B-203ENST00000554264 MDM2Q00987 491 aaPredicted RBP9.55□□□□□ -0.88
VPS33B-203ENST00000554264 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.55□□□□□ -0.88
VPS33B-203ENST00000554264 FHAD1B1AJZ9 1412 aa9.55□□□□□ -0.88
VPS33B-203ENST00000554264 SHROOM2Q13796 1616 aa9.54□□□□□ -0.88
VPS33B-203ENST00000554264 AMHR2Q16671 573 aa9.54□□□□□ -0.88
VPS33B-203ENST00000554264 LRCH3Q96II8 777 aa9.54□□□□□ -0.88
VPS33B-203ENST00000554264 SLC10A3P09131 477 aa9.53□□□□□ -0.88
VPS33B-203ENST00000554264 DAXXQ9UER7 740 aaPredicted RBP9.53□□□□□ -0.88
VPS33B-203ENST00000554264 PTPN5P54829 565 aa9.52□□□□□ -0.89
VPS33B-203ENST00000554264 WBP1LQ9NX94 342 aa9.52□□□□□ -0.89
VPS33B-203ENST00000554264 SUPT5HO00267 1087 aaKnown RBP9.51□□□□□ -0.89
VPS33B-203ENST00000554264 PDE4DQ08499 809 aa9.51□□□□□ -0.89
VPS33B-203ENST00000554264 PLSCR2Q9NRY7 297 aa9.51□□□□□ -0.89
VPS33B-203ENST00000554264 HPS5Q9UPZ3 1129 aa9.51□□□□□ -0.89
VPS33B-203ENST00000554264 ERICH3Q5RHP9 1530 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms