RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 STRCP1A6NGW2 1772 aa17.31■□□□□ 0.36
CCDC88C-208ENST00000554165 CLTCL1P53675 1640 aa17.3■□□□□ 0.36
CCDC88C-208ENST00000554165 BCANQ96GW7 911 aa17.3■□□□□ 0.36
CCDC88C-208ENST00000554165 MPHOSPH9Q99550 1183 aa17.3■□□□□ 0.36
CCDC88C-208ENST00000554165 RAB3GAP2Q9H2M9 1393 aa17.29■□□□□ 0.36
CCDC88C-208ENST00000554165 PPP1R15AO75807 674 aaPredicted RBP17.29■□□□□ 0.36
CCDC88C-208ENST00000554165 TRPM2O94759 1503 aa17.28■□□□□ 0.36
CCDC88C-208ENST00000554165 ZNF326Q5BKZ1 582 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-208ENST00000554165 PLEKHG1Q9ULL1 1385 aa17.26■□□□□ 0.35
CCDC88C-208ENST00000554165 CPS1P31327 1500 aa17.25■□□□□ 0.35
CCDC88C-208ENST00000554165 UBAP1LF5GYI3 381 aa17.24■□□□□ 0.35
CCDC88C-208ENST00000554165 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC88C-208ENST00000554165 IQSEC2Q5JU85 1478 aa17.24■□□□□ 0.35
CCDC88C-208ENST00000554165 LRRC7Q96NW7 1537 aa17.23■□□□□ 0.35
CCDC88C-208ENST00000554165 HDGFP51858 240 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-208ENST00000554165 RBM33Q96EV2 1170 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-208ENST00000554165 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.35
CCDC88C-208ENST00000554165 KCNA6P17658 529 aa17.21■□□□□ 0.35
CCDC88C-208ENST00000554165 TBX22Q9Y458 520 aa17.19■□□□□ 0.34
CCDC88C-208ENST00000554165 NEXMIFQ5QGS0 1516 aa17.18■□□□□ 0.34
CCDC88C-208ENST00000554165 KIF1BO60333 1816 aa17.18■□□□□ 0.34
CCDC88C-208ENST00000554165 PIP4K2BP78356 416 aa17.17■□□□□ 0.34
CCDC88C-208ENST00000554165 PHF23Q9BUL5 403 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-208ENST00000554165 RGL3Q3MIN7 710 aa17.16■□□□□ 0.34
CCDC88C-208ENST00000554165 PROSER2Q86WR7 435 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-208ENST00000554165 ALKQ9UM73 1620 aa17.16■□□□□ 0.34
CCDC88C-208ENST00000554165 TMEM94Q12767 1356 aa17.15■□□□□ 0.34
CCDC88C-208ENST00000554165 CCDC144AA2RUR9 1427 aa17.15■□□□□ 0.34
CCDC88C-208ENST00000554165 NRXN3Q9Y4C0 1643 aa17.15■□□□□ 0.34
CCDC88C-208ENST00000554165 XIRP1Q702N8 1843 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-208ENST00000554165 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-208ENST00000554165 PTPRUQ92729 1446 aa17.14■□□□□ 0.33
CCDC88C-208ENST00000554165 NWD1Q149M9 1564 aa17.13■□□□□ 0.33
CCDC88C-208ENST00000554165 METP08581 1390 aa17.13■□□□□ 0.33
CCDC88C-208ENST00000554165 SPATA31E1Q6ZUB1 1445 aa17.13■□□□□ 0.33
CCDC88C-208ENST00000554165 CHD2O14647 1828 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-208ENST00000554165 TOM1O60784 492 aa17.12■□□□□ 0.33
CCDC88C-208ENST00000554165 HRCP23327 699 aa17.12■□□□□ 0.33
CCDC88C-208ENST00000554165 ACIN1Q9UKV3 1341 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-208ENST00000554165 SETBP1Q9Y6X0 1596 aa17.11■□□□□ 0.33
CCDC88C-208ENST00000554165 AMOTL2Q9Y2J4 779 aa17.1■□□□□ 0.33
CCDC88C-208ENST00000554165 RPGRIP1LQ68CZ1 1315 aa17.1■□□□□ 0.33
CCDC88C-208ENST00000554165 ADGRF5Q8IZF2 1346 aa17.1■□□□□ 0.33
CCDC88C-208ENST00000554165 VGFO15240 615 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-208ENST00000554165 ANKRD30BQ9BXX2 1392 aa17.09■□□□□ 0.33
CCDC88C-208ENST00000554165 NKTRP30414 1462 aaKnown RBP17.09■□□□□ 0.33
CCDC88C-208ENST00000554165 DIP2AQ14689 1571 aa17.09■□□□□ 0.33
CCDC88C-208ENST00000554165 PPLO60437 1756 aa17.08■□□□□ 0.33
CCDC88C-208ENST00000554165 PIK3R4Q99570 1358 aa17.07■□□□□ 0.32
CCDC88C-208ENST00000554165 HSPA1LP34931 641 aa17.06■□□□□ 0.32
CCDC88C-208ENST00000554165 C14orf37Q86TY3 774 aa17.02■□□□□ 0.32
CCDC88C-208ENST00000554165 SETD1AO15047 1707 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-208ENST00000554165 XRN1Q8IZH2 1706 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-208ENST00000554165 IFT172Q9UG01 1749 aa17.01■□□□□ 0.31
CCDC88C-208ENST00000554165 MSH6P52701 1360 aa17.01■□□□□ 0.31
CCDC88C-208ENST00000554165 TMEM132EQ6IEE7 984 aa16.99■□□□□ 0.31
CCDC88C-208ENST00000554165 KDM2AQ9Y2K7 1162 aa16.98■□□□□ 0.31
CCDC88C-208ENST00000554165 ROBO2Q9HCK4 1378 aa16.98■□□□□ 0.31
CCDC88C-208ENST00000554165 C19orf44Q9H6X5 657 aa16.97■□□□□ 0.31
CCDC88C-208ENST00000554165 SLAIN2Q9P270 581 aa16.97■□□□□ 0.31
CCDC88C-208ENST00000554165 STK26Q9P289 416 aa16.97■□□□□ 0.31
CCDC88C-208ENST00000554165 PIK3C2GO75747 1445 aa16.96■□□□□ 0.31
CCDC88C-208ENST00000554165 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.31
CCDC88C-208ENST00000554165 CFAP70Q5T0N1 1121 aa16.96■□□□□ 0.31
CCDC88C-208ENST00000554165 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.96■□□□□ 0.3
CCDC88C-208ENST00000554165 ASXL1Q8IXJ9 1541 aa16.96■□□□□ 0.3
CCDC88C-208ENST00000554165 NCOA3Q9Y6Q9 1424 aa16.96■□□□□ 0.3
CCDC88C-208ENST00000554165 DCAF11Q8TEB1 546 aa16.95■□□□□ 0.3
CCDC88C-208ENST00000554165 FAM135BQ49AJ0 1406 aa16.95■□□□□ 0.3
CCDC88C-208ENST00000554165 DHX57Q6P158 1386 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-208ENST00000554165 NRXN1Q9ULB1 1477 aa16.93■□□□□ 0.3
CCDC88C-208ENST00000554165 ATF3P18847 181 aa16.93■□□□□ 0.3
CCDC88C-208ENST00000554165 C14orf93Q9H972 538 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-208ENST00000554165 MYOM2P54296 1465 aa16.93■□□□□ 0.3
CCDC88C-208ENST00000554165 ROBO1Q9Y6N7 1651 aa16.92■□□□□ 0.3
CCDC88C-208ENST00000554165 WAPLQ7Z5K2 1190 aa16.92■□□□□ 0.3
CCDC88C-208ENST00000554165 CADPS2Q86UW7 1296 aa16.91■□□□□ 0.3
CCDC88C-208ENST00000554165 SIN3AQ96ST3 1273 aa16.91■□□□□ 0.3
CCDC88C-208ENST00000554165 PTCH1Q13635 1447 aa16.9■□□□□ 0.3
CCDC88C-208ENST00000554165 ADGRL3Q9HAR2 1447 aa16.9■□□□□ 0.3
CCDC88C-208ENST00000554165 LRPPRCP42704 1394 aaKnown RBP16.89■□□□□ 0.3
CCDC88C-208ENST00000554165 PLEKHH1Q9ULM0 1364 aa16.89■□□□□ 0.3
CCDC88C-208ENST00000554165 NALCNQ8IZF0 1738 aa16.89■□□□□ 0.29
CCDC88C-208ENST00000554165 PRAG1Q86YV5 1406 aa16.87■□□□□ 0.29
CCDC88C-208ENST00000554165 YTHDC2Q9H6S0 1430 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-208ENST00000554165 BRINP3Q76B58 766 aa16.87■□□□□ 0.29
CCDC88C-208ENST00000554165 ABCC11Q96J66 1382 aa16.87■□□□□ 0.29
CCDC88C-208ENST00000554165 MST1RQ04912 1400 aa16.87■□□□□ 0.29
CCDC88C-208ENST00000554165 NEUROD1Q13562 356 aa16.86■□□□□ 0.29
CCDC88C-208ENST00000554165 DISP3Q9P2K9 1392 aa16.86■□□□□ 0.29
CCDC88C-208ENST00000554165 DCCP43146 1447 aa16.86■□□□□ 0.29
CCDC88C-208ENST00000554165 DDX17Q92841 729 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-208ENST00000554165 TECPR2O15040 1411 aa16.85■□□□□ 0.29
CCDC88C-208ENST00000554165 SAFB2Q14151 953 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88C-208ENST00000554165 ADGRB1O14514 1584 aa16.82■□□□□ 0.28
CCDC88C-208ENST00000554165 NUTM2FA1L443 756 aa16.82■□□□□ 0.28
CCDC88C-208ENST00000554165 L3MBTL2Q969R5 705 aa16.82■□□□□ 0.28
CCDC88C-208ENST00000554165 ORAI2Q96SN7 254 aa16.82■□□□□ 0.28
CCDC88C-208ENST00000554165 TRAK1Q9UPV9 953 aa16.82■□□□□ 0.28
CCDC88C-208ENST00000554165 C1orf167Q5SNV9 1468 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms