RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 SPHKAPQ2M3C7 1700 aa10.13□□□□□ -0.79
SLIRP-203ENST00000554074 NKTRP30414 1462 aaKnown RBP10.12□□□□□ -0.79
SLIRP-203ENST00000554074 PIP4K2BP78356 416 aa10.12□□□□□ -0.79
SLIRP-203ENST00000554074 RRBP1Q9P2E9 1410 aaKnown RBP10.12□□□□□ -0.79
SLIRP-203ENST00000554074 PLEKHG1Q9ULL1 1385 aa10.12□□□□□ -0.79
SLIRP-203ENST00000554074 DIP2AQ14689 1571 aa10.11□□□□□ -0.79
SLIRP-203ENST00000554074 MED1Q15648 1581 aaPredicted RBP10.11□□□□□ -0.79
SLIRP-203ENST00000554074 KCNA6P17658 529 aa10.11□□□□□ -0.79
SLIRP-203ENST00000554074 HSPA1LP34931 641 aa10.11□□□□□ -0.79
SLIRP-203ENST00000554074 HDGFP51858 240 aaKnown RBP10.11□□□□□ -0.79
SLIRP-203ENST00000554074 SCAF1Q9H7N4 1312 aaKnown RBP10.1□□□□□ -0.79
SLIRP-203ENST00000554074 RIMS2Q9UQ26 1411 aa10.1□□□□□ -0.79
SLIRP-203ENST00000554074 NUP155O75694 1391 aa10.1□□□□□ -0.79
SLIRP-203ENST00000554074 KIF1BO60333 1816 aa10.09□□□□□ -0.79
SLIRP-203ENST00000554074 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.08□□□□□ -0.8
SLIRP-203ENST00000554074 TMEM94Q12767 1356 aa10.08□□□□□ -0.8
SLIRP-203ENST00000554074 SLC26A8Q96RN1 970 aa10.07□□□□□ -0.8
SLIRP-203ENST00000554074 FAM135BQ49AJ0 1406 aa10.07□□□□□ -0.8
SLIRP-203ENST00000554074 ROBO1Q9Y6N7 1651 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 PIK3R4Q99570 1358 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 ITGAEP38570 1179 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 TBX22Q9Y458 520 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 NAIPQ13075 1403 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 ADAMTS13Q76LX8 1427 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 NCOA3Q9Y6Q9 1424 aa10.06□□□□□ -0.8
SLIRP-203ENST00000554074 PPP1R15AO75807 674 aaPredicted RBP10.05□□□□□ -0.8
SLIRP-203ENST00000554074 PPARGC1BQ86YN6 1023 aaKnown RBP10.05□□□□□ -0.8
SLIRP-203ENST00000554074 TRPM2O94759 1503 aa10.05□□□□□ -0.8
SLIRP-203ENST00000554074 SETBP1Q9Y6X0 1596 aa10.05□□□□□ -0.8
SLIRP-203ENST00000554074 CLTCL1P53675 1640 aa10.04□□□□□ -0.8
SLIRP-203ENST00000554074 NRXN3Q9Y4C0 1643 aa10.04□□□□□ -0.8
SLIRP-203ENST00000554074 PROSER2Q86WR7 435 aaPredicted RBP10.04□□□□□ -0.8
SLIRP-203ENST00000554074 HFM1A2PYH4 1435 aa10.04□□□□□ -0.8
SLIRP-203ENST00000554074 MSH6P52701 1360 aa10.03□□□□□ -0.8
SLIRP-203ENST00000554074 CHGAP10645 457 aaKnown RBP10.03□□□□□ -0.8
SLIRP-203ENST00000554074 XRN1Q8IZH2 1706 aaKnown RBP10.03□□□□□ -0.8
SLIRP-203ENST00000554074 BCANQ96GW7 911 aa10.03□□□□□ -0.8
SLIRP-203ENST00000554074 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.03□□□□□ -0.8
SLIRP-203ENST00000554074 PHLPP1O60346 1717 aa10.02□□□□□ -0.8
SLIRP-203ENST00000554074 NEXMIFQ5QGS0 1516 aa10.02□□□□□ -0.81
SLIRP-203ENST00000554074 PPLO60437 1756 aa10□□□□□ -0.81
SLIRP-203ENST00000554074 SETD1AO15047 1707 aaKnown RBP9.99□□□□□ -0.81
SLIRP-203ENST00000554074 NUTM2DQ5VT03 806 aaPredicted RBP9.98□□□□□ -0.81
SLIRP-203ENST00000554074 RBM33Q96EV2 1170 aaKnown RBP9.98□□□□□ -0.81
SLIRP-203ENST00000554074 SLAIN2Q9P270 581 aa9.98□□□□□ -0.81
SLIRP-203ENST00000554074 DCCP43146 1447 aa9.98□□□□□ -0.81
SLIRP-203ENST00000554074 PTPRUQ92729 1446 aa9.98□□□□□ -0.81
SLIRP-203ENST00000554074 COL16A1Q07092 1604 aaPredicted RBP9.97□□□□□ -0.81
SLIRP-203ENST00000554074 AHDC1Q5TGY3 1603 aaPredicted RBP9.97□□□□□ -0.81
SLIRP-203ENST00000554074 C19orf44Q9H6X5 657 aa9.97□□□□□ -0.81
SLIRP-203ENST00000554074 CADPS2Q86UW7 1296 aa9.96□□□□□ -0.82
SLIRP-203ENST00000554074 AMOTL2Q9Y2J4 779 aa9.96□□□□□ -0.82
SLIRP-203ENST00000554074 SHPRHQ149N8 1683 aa9.96□□□□□ -0.82
SLIRP-203ENST00000554074 ZNF326Q5BKZ1 582 aaKnown RBP9.95□□□□□ -0.82
SLIRP-203ENST00000554074 PRAG1Q86YV5 1406 aa9.95□□□□□ -0.82
SLIRP-203ENST00000554074 NALCNQ8IZF0 1738 aa9.95□□□□□ -0.82
SLIRP-203ENST00000554074 IFT172Q9UG01 1749 aa9.95□□□□□ -0.82
SLIRP-203ENST00000554074 NHSL1Q5SYE7 1610 aa9.94□□□□□ -0.82
SLIRP-203ENST00000554074 METP08581 1390 aa9.94□□□□□ -0.82
SLIRP-203ENST00000554074 RPGRIP1LQ68CZ1 1315 aa9.94□□□□□ -0.82
SLIRP-203ENST00000554074 ACIN1Q9UKV3 1341 aaKnown RBP9.94□□□□□ -0.82
SLIRP-203ENST00000554074 C14orf37Q86TY3 774 aa9.94□□□□□ -0.82
SLIRP-203ENST00000554074 TRIM52Q96A61 297 aa9.94□□□□□ -0.82
SLIRP-203ENST00000554074 JCADQ9P266 1359 aa9.93□□□□□ -0.82
SLIRP-203ENST00000554074 ATF3P18847 181 aa9.93□□□□□ -0.82
SLIRP-203ENST00000554074 SLC4A1APQ9BWU0 796 aaKnown RBP9.93□□□□□ -0.82
SLIRP-203ENST00000554074 PTCH1Q13635 1447 aa9.92□□□□□ -0.82
SLIRP-203ENST00000554074 ADGRL3Q9HAR2 1447 aa9.92□□□□□ -0.82
SLIRP-203ENST00000554074 VGFO15240 615 aaPredicted RBP9.92□□□□□ -0.82
SLIRP-203ENST00000554074 RGS17Q9UGC6 210 aaPredicted RBP9.91□□□□□ -0.82
SLIRP-203ENST00000554074 LAMC1P11047 1609 aa9.91□□□□□ -0.82
SLIRP-203ENST00000554074 ASXL1Q8IXJ9 1541 aa9.91□□□□□ -0.82
SLIRP-203ENST00000554074 MST1RQ04912 1400 aa9.9□□□□□ -0.82
SLIRP-203ENST00000554074 KNDC1Q76NI1 1749 aa9.9□□□□□ -0.83
SLIRP-203ENST00000554074 SPATA31A6Q5VVP1 1343 aa9.89□□□□□ -0.83
SLIRP-203ENST00000554074 BRINP3Q76B58 766 aa9.89□□□□□ -0.83
SLIRP-203ENST00000554074 CCDC144AA2RUR9 1427 aa9.89□□□□□ -0.83
SLIRP-203ENST00000554074 SPATA31E1Q6ZUB1 1445 aa9.89□□□□□ -0.83
SLIRP-203ENST00000554074 SETD5Q9C0A6 1442 aa9.88□□□□□ -0.83
SLIRP-203ENST00000554074 MPHOSPH9Q99550 1183 aa9.87□□□□□ -0.83
SLIRP-203ENST00000554074 ANKRD30BQ9BXX2 1392 aa9.87□□□□□ -0.83
SLIRP-203ENST00000554074 LRP6O75581 1613 aa9.86□□□□□ -0.83
SLIRP-203ENST00000554074 TECPR2O15040 1411 aa9.86□□□□□ -0.83
SLIRP-203ENST00000554074 CDC42BPGQ6DT37 1551 aa9.86□□□□□ -0.83
SLIRP-203ENST00000554074 ROBO2Q9HCK4 1378 aa9.86□□□□□ -0.83
SLIRP-203ENST00000554074 C1orf167Q5SNV9 1468 aa9.85□□□□□ -0.83
SLIRP-203ENST00000554074 PIK3C2GO75747 1445 aa9.84□□□□□ -0.83
SLIRP-203ENST00000554074 POTEAQ6S8J7 498 aa9.84□□□□□ -0.83
SLIRP-203ENST00000554074 LRRC59Q96AG4 307 aaKnown RBP9.83□□□□□ -0.84
SLIRP-203ENST00000554074 MYOM2P54296 1465 aa9.83□□□□□ -0.84
SLIRP-203ENST00000554074 NRXN1Q9ULB1 1477 aa9.83□□□□□ -0.84
SLIRP-203ENST00000554074 ADGRF5Q8IZF2 1346 aa9.82□□□□□ -0.84
SLIRP-203ENST00000554074 COL22A1Q8NFW1 1626 aaPredicted RBP9.82□□□□□ -0.84
SLIRP-203ENST00000554074 LRPPRCP42704 1394 aaKnown RBP9.82□□□□□ -0.84
SLIRP-203ENST00000554074 FMN2Q9NZ56 1722 aa9.82□□□□□ -0.84
SLIRP-203ENST00000554074 MARF1Q9Y4F3 1742 aaKnown RBP9.82□□□□□ -0.84
SLIRP-203ENST00000554074 PNPLA6Q8IY17 1366 aa9.81□□□□□ -0.84
SLIRP-203ENST00000554074 ABCC11Q96J66 1382 aa9.81□□□□□ -0.84
SLIRP-203ENST00000554074 RAB3GAP2Q9H2M9 1393 aa9.81□□□□□ -0.84
SLIRP-203ENST00000554074 ZNF772Q68DY9 489 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms