RNA–Protein interactions for RNA: ENST00000553744.1

TMEM253-202, Transcript of transmembrane protein 253, humanhuman

TSL 3

Gene TMEM253, Length 195 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM253-202ENST00000553744 CHGAP10645 457 aaKnown RBP17.61■□□□□ 0.41
TMEM253-202ENST00000553744 FOXD1Q16676 465 aa17.61■□□□□ 0.41
TMEM253-202ENST00000553744 TXNDC2Q86VQ3 553 aa17.61■□□□□ 0.41
TMEM253-202ENST00000553744 RIMS2Q9UQ26 1411 aa17.6■□□□□ 0.41
TMEM253-202ENST00000553744 LTBP4Q8N2S1 1624 aa17.59■□□□□ 0.41
TMEM253-202ENST00000553744 TRIM26Q12899 539 aaPredicted RBP17.57■□□□□ 0.4
TMEM253-202ENST00000553744 IQSEC2Q5JU85 1478 aa17.56■□□□□ 0.4
TMEM253-202ENST00000553744 CCDC144AA2RUR9 1427 aa17.56■□□□□ 0.4
TMEM253-202ENST00000553744 KIF1BO60333 1816 aa17.56■□□□□ 0.4
TMEM253-202ENST00000553744 ZNF335Q9H4Z2 1342 aaPredicted RBP17.55■□□□□ 0.4
TMEM253-202ENST00000553744 HDGFP51858 240 aaKnown RBP17.54■□□□□ 0.4
TMEM253-202ENST00000553744 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.54■□□□□ 0.4
TMEM253-202ENST00000553744 PLEKHG1Q9ULL1 1385 aa17.53■□□□□ 0.4
TMEM253-202ENST00000553744 PPP1R15AO75807 674 aaPredicted RBP17.53■□□□□ 0.4
TMEM253-202ENST00000553744 NEXMIFQ5QGS0 1516 aa17.52■□□□□ 0.4
TMEM253-202ENST00000553744 ZNF326Q5BKZ1 582 aaKnown RBP17.51■□□□□ 0.39
TMEM253-202ENST00000553744 ANKRD30BQ9BXX2 1392 aa17.5■□□□□ 0.39
TMEM253-202ENST00000553744 SPATA31E1Q6ZUB1 1445 aa17.49■□□□□ 0.39
TMEM253-202ENST00000553744 NUTM2DQ5VT03 806 aaPredicted RBP17.49■□□□□ 0.39
TMEM253-202ENST00000553744 CPS1P31327 1500 aa17.48■□□□□ 0.39
TMEM253-202ENST00000553744 DIP2AQ14689 1571 aa17.47■□□□□ 0.39
TMEM253-202ENST00000553744 SETBP1Q9Y6X0 1596 aa17.46■□□□□ 0.39
TMEM253-202ENST00000553744 BCANQ96GW7 911 aa17.46■□□□□ 0.39
TMEM253-202ENST00000553744 SLC26A8Q96RN1 970 aa17.46■□□□□ 0.39
TMEM253-202ENST00000553744 ADAMTS13Q76LX8 1427 aa17.46■□□□□ 0.39
TMEM253-202ENST00000553744 RPGRIP1LQ68CZ1 1315 aa17.46■□□□□ 0.38
TMEM253-202ENST00000553744 STRCP1A6NGW2 1772 aa17.45■□□□□ 0.38
TMEM253-202ENST00000553744 PPLO60437 1756 aa17.45■□□□□ 0.38
TMEM253-202ENST00000553744 NRXN3Q9Y4C0 1643 aa17.44■□□□□ 0.38
TMEM253-202ENST00000553744 SENP3Q9H4L4 574 aaPredicted RBP17.44■□□□□ 0.38
TMEM253-202ENST00000553744 NWD1Q149M9 1564 aa17.43■□□□□ 0.38
TMEM253-202ENST00000553744 IFT172Q9UG01 1749 aa17.42■□□□□ 0.38
TMEM253-202ENST00000553744 TBX22Q9Y458 520 aa17.42■□□□□ 0.38
TMEM253-202ENST00000553744 VGFO15240 615 aaPredicted RBP17.41■□□□□ 0.38
TMEM253-202ENST00000553744 RGL3Q3MIN7 710 aa17.41■□□□□ 0.38
TMEM253-202ENST00000553744 LRRC7Q96NW7 1537 aa17.4■□□□□ 0.38
TMEM253-202ENST00000553744 KCNA6P17658 529 aa17.39■□□□□ 0.37
TMEM253-202ENST00000553744 PIK3R4Q99570 1358 aa17.39■□□□□ 0.37
TMEM253-202ENST00000553744 NKTRP30414 1462 aaKnown RBP17.38■□□□□ 0.37
TMEM253-202ENST00000553744 UBAP1LF5GYI3 381 aa17.38■□□□□ 0.37
TMEM253-202ENST00000553744 CHD2O14647 1828 aaKnown RBP17.37■□□□□ 0.37
TMEM253-202ENST00000553744 DHX57Q6P158 1386 aaKnown RBP17.37■□□□□ 0.37
TMEM253-202ENST00000553744 MYOM2P54296 1465 aa17.36■□□□□ 0.37
TMEM253-202ENST00000553744 SETD1AO15047 1707 aaKnown RBP17.35■□□□□ 0.37
TMEM253-202ENST00000553744 ADGRF5Q8IZF2 1346 aa17.35■□□□□ 0.37
TMEM253-202ENST00000553744 ALKQ9UM73 1620 aa17.35■□□□□ 0.37
TMEM253-202ENST00000553744 PIK3C2GO75747 1445 aa17.34■□□□□ 0.37
TMEM253-202ENST00000553744 PTPRUQ92729 1446 aa17.34■□□□□ 0.37
TMEM253-202ENST00000553744 NRXN1Q9ULB1 1477 aa17.33■□□□□ 0.37
TMEM253-202ENST00000553744 METP08581 1390 aa17.33■□□□□ 0.36
TMEM253-202ENST00000553744 XRN1Q8IZH2 1706 aaKnown RBP17.33■□□□□ 0.36
TMEM253-202ENST00000553744 TMEM94Q12767 1356 aa17.31■□□□□ 0.36
TMEM253-202ENST00000553744 XIRP1Q702N8 1843 aaKnown RBP17.31■□□□□ 0.36
TMEM253-202ENST00000553744 PROSER2Q86WR7 435 aaPredicted RBP17.3■□□□□ 0.36
TMEM253-202ENST00000553744 PCGF6Q9BYE7 350 aa17.3■□□□□ 0.36
TMEM253-202ENST00000553744 AMOTL2Q9Y2J4 779 aa17.29■□□□□ 0.36
TMEM253-202ENST00000553744 ASXL1Q8IXJ9 1541 aa17.27■□□□□ 0.36
TMEM253-202ENST00000553744 HSPA1LP34931 641 aa17.27■□□□□ 0.36
TMEM253-202ENST00000553744 LAMC1P11047 1609 aa17.27■□□□□ 0.36
TMEM253-202ENST00000553744 PRAG1Q86YV5 1406 aa17.27■□□□□ 0.35
TMEM253-202ENST00000553744 DCAF11Q8TEB1 546 aa17.26■□□□□ 0.35
TMEM253-202ENST00000553744 STAC3Q96MF2 364 aa17.26■□□□□ 0.35
TMEM253-202ENST00000553744 NCOA3Q9Y6Q9 1424 aa17.26■□□□□ 0.35
TMEM253-202ENST00000553744 PTCH1Q13635 1447 aa17.25■□□□□ 0.35
TMEM253-202ENST00000553744 RBM33Q96EV2 1170 aaKnown RBP17.25■□□□□ 0.35
TMEM253-202ENST00000553744 MED1Q15648 1581 aaPredicted RBP17.24■□□□□ 0.35
TMEM253-202ENST00000553744 SIN3AQ96ST3 1273 aa17.24■□□□□ 0.35
TMEM253-202ENST00000553744 TOM1O60784 492 aa17.23■□□□□ 0.35
TMEM253-202ENST00000553744 C14orf93Q9H972 538 aaKnown RBP17.23■□□□□ 0.35
TMEM253-202ENST00000553744 KDM2AQ9Y2K7 1162 aa17.23■□□□□ 0.35
TMEM253-202ENST00000553744 MSH6P52701 1360 aa17.23■□□□□ 0.35
TMEM253-202ENST00000553744 LRPPRCP42704 1394 aaKnown RBP17.21■□□□□ 0.35
TMEM253-202ENST00000553744 ROBO2Q9HCK4 1378 aa17.21■□□□□ 0.35
TMEM253-202ENST00000553744 CFAP70Q5T0N1 1121 aa17.21■□□□□ 0.35
TMEM253-202ENST00000553744 TECPR2O15040 1411 aa17.21■□□□□ 0.34
TMEM253-202ENST00000553744 NEUROD1Q13562 356 aa17.2■□□□□ 0.34
TMEM253-202ENST00000553744 KNDC1Q76NI1 1749 aa17.2■□□□□ 0.34
TMEM253-202ENST00000553744 YTHDC2Q9H6S0 1430 aaKnown RBP17.2■□□□□ 0.34
TMEM253-202ENST00000553744 TMEM132EQ6IEE7 984 aa17.19■□□□□ 0.34
TMEM253-202ENST00000553744 ADGRB1O14514 1584 aa17.19■□□□□ 0.34
TMEM253-202ENST00000553744 ABCC11Q96J66 1382 aa17.18■□□□□ 0.34
TMEM253-202ENST00000553744 C14orf37Q86TY3 774 aa17.18■□□□□ 0.34
TMEM253-202ENST00000553744 ADGRL3Q9HAR2 1447 aa17.18■□□□□ 0.34
TMEM253-202ENST00000553744 DCCP43146 1447 aa17.17■□□□□ 0.34
TMEM253-202ENST00000553744 PIP4K2BP78356 416 aa17.17■□□□□ 0.34
TMEM253-202ENST00000553744 L3MBTL2Q969R5 705 aa17.17■□□□□ 0.34
TMEM253-202ENST00000553744 C19orf44Q9H6X5 657 aa17.17■□□□□ 0.34
TMEM253-202ENST00000553744 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.17■□□□□ 0.34
TMEM253-202ENST00000553744 NALCNQ8IZF0 1738 aa17.16■□□□□ 0.34
TMEM253-202ENST00000553744 STK26Q9P289 416 aa17.16■□□□□ 0.34
TMEM253-202ENST00000553744 SCAF1Q9H7N4 1312 aaKnown RBP17.16■□□□□ 0.34
TMEM253-202ENST00000553744 KIAA1210Q9ULL0 1709 aa17.15■□□□□ 0.34
TMEM253-202ENST00000553744 FAM135BQ49AJ0 1406 aa17.13■□□□□ 0.33
TMEM253-202ENST00000553744 DLC1Q96QB1 1528 aa17.13■□□□□ 0.33
TMEM253-202ENST00000553744 CADPS2Q86UW7 1296 aa17.13■□□□□ 0.33
TMEM253-202ENST00000553744 ATF3P18847 181 aa17.12■□□□□ 0.33
TMEM253-202ENST00000553744 SIRT1Q96EB6 747 aa17.11■□□□□ 0.33
TMEM253-202ENST00000553744 TONSLQ96HA7 1378 aa17.11■□□□□ 0.33
TMEM253-202ENST00000553744 PLEKHH1Q9ULM0 1364 aa17.11■□□□□ 0.33
TMEM253-202ENST00000553744 SLAIN2Q9P270 581 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms