RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 SPHKAPQ2M3C7 1700 aa27.67■■■□□ 2.02
SHMT2-206ENST00000553529 RIMS2Q9UQ26 1411 aa27.67■■■□□ 2.02
SHMT2-206ENST00000553529 PIP4K2BP78356 416 aa27.66■■■□□ 2.02
SHMT2-206ENST00000553529 RBM33Q96EV2 1170 aaKnown RBP27.65■■■□□ 2.02
SHMT2-206ENST00000553529 SCAF1Q9H7N4 1312 aaKnown RBP27.65■■■□□ 2.02
SHMT2-206ENST00000553529 HFM1A2PYH4 1435 aa27.64■■■□□ 2.02
SHMT2-206ENST00000553529 CLTCL1P53675 1640 aa27.6■■■□□ 2.01
SHMT2-206ENST00000553529 BCANQ96GW7 911 aa27.58■■■□□ 2.01
SHMT2-206ENST00000553529 TRIM52Q96A61 297 aa27.56■■■□□ 2
SHMT2-206ENST00000553529 PPP1R15AO75807 674 aaPredicted RBP27.54■■■□□ 2
SHMT2-206ENST00000553529 PLEKHG1Q9ULL1 1385 aa27.54■■■□□ 2
SHMT2-206ENST00000553529 HSPA1LP34931 641 aa27.53■■■□□ 2
SHMT2-206ENST00000553529 FOXD1Q16676 465 aa27.53■■■□□ 2
SHMT2-206ENST00000553529 NWD1Q149M9 1564 aa27.52■■■□□ 2
SHMT2-206ENST00000553529 ADAMTS13Q76LX8 1427 aa27.51■■□□□ 1.99
SHMT2-206ENST00000553529 TRPM2O94759 1503 aa27.51■■□□□ 1.99
SHMT2-206ENST00000553529 TMEM94Q12767 1356 aa27.5■■□□□ 1.99
SHMT2-206ENST00000553529 TOM1O60784 492 aa27.5■■□□□ 1.99
SHMT2-206ENST00000553529 NRXN3Q9Y4C0 1643 aa27.49■■□□□ 1.99
SHMT2-206ENST00000553529 KCNA6P17658 529 aa27.48■■□□□ 1.99
SHMT2-206ENST00000553529 CHD2O14647 1828 aaKnown RBP27.47■■□□□ 1.99
SHMT2-206ENST00000553529 SLC4A1APQ9BWU0 796 aaKnown RBP27.44■■□□□ 1.98
SHMT2-206ENST00000553529 DISP3Q9P2K9 1392 aa27.44■■□□□ 1.98
SHMT2-206ENST00000553529 NEXMIFQ5QGS0 1516 aa27.43■■□□□ 1.98
SHMT2-206ENST00000553529 PROSER2Q86WR7 435 aaPredicted RBP27.43■■□□□ 1.98
SHMT2-206ENST00000553529 ZNF326Q5BKZ1 582 aaKnown RBP27.42■■□□□ 1.98
SHMT2-206ENST00000553529 PTPRUQ92729 1446 aa27.41■■□□□ 1.98
SHMT2-206ENST00000553529 NKTRP30414 1462 aaKnown RBP27.4■■□□□ 1.98
SHMT2-206ENST00000553529 KIF1BO60333 1816 aa27.4■■□□□ 1.98
SHMT2-206ENST00000553529 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.4■■□□□ 1.98
SHMT2-206ENST00000553529 ILDR2Q71H61 639 aa27.38■■□□□ 1.97
SHMT2-206ENST00000553529 TBX22Q9Y458 520 aa27.37■■□□□ 1.97
SHMT2-206ENST00000553529 HDGFP51858 240 aaKnown RBP27.35■■□□□ 1.97
SHMT2-206ENST00000553529 DIP2AQ14689 1571 aa27.35■■□□□ 1.97
SHMT2-206ENST00000553529 SETBP1Q9Y6X0 1596 aa27.35■■□□□ 1.97
SHMT2-206ENST00000553529 METP08581 1390 aa27.33■■□□□ 1.97
SHMT2-206ENST00000553529 ROBO1Q9Y6N7 1651 aa27.3■■□□□ 1.96
SHMT2-206ENST00000553529 MPHOSPH9Q99550 1183 aa27.3■■□□□ 1.96
SHMT2-206ENST00000553529 MED1Q15648 1581 aaPredicted RBP27.3■■□□□ 1.96
SHMT2-206ENST00000553529 XRN1Q8IZH2 1706 aaKnown RBP27.3■■□□□ 1.96
SHMT2-206ENST00000553529 SETD5Q9C0A6 1442 aa27.29■■□□□ 1.96
SHMT2-206ENST00000553529 AMOTL2Q9Y2J4 779 aa27.28■■□□□ 1.96
SHMT2-206ENST00000553529 RAB3GAP2Q9H2M9 1393 aa27.27■■□□□ 1.96
SHMT2-206ENST00000553529 PPLO60437 1756 aa27.27■■□□□ 1.96
SHMT2-206ENST00000553529 SETD1AO15047 1707 aaKnown RBP27.27■■□□□ 1.96
SHMT2-206ENST00000553529 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.24■■□□□ 1.95
SHMT2-206ENST00000553529 MSH6P52701 1360 aa27.24■■□□□ 1.95
SHMT2-206ENST00000553529 PIK3R4Q99570 1358 aa27.21■■□□□ 1.95
SHMT2-206ENST00000553529 FAM135BQ49AJ0 1406 aa27.2■■□□□ 1.94
SHMT2-206ENST00000553529 C14orf37Q86TY3 774 aa27.2■■□□□ 1.94
SHMT2-206ENST00000553529 RGL3Q3MIN7 710 aa27.19■■□□□ 1.94
SHMT2-206ENST00000553529 CCDC144AA2RUR9 1427 aa27.18■■□□□ 1.94
SHMT2-206ENST00000553529 SPATA31E1Q6ZUB1 1445 aa27.18■■□□□ 1.94
SHMT2-206ENST00000553529 IFT172Q9UG01 1749 aa27.16■■□□□ 1.94
SHMT2-206ENST00000553529 SLAIN2Q9P270 581 aa27.16■■□□□ 1.94
SHMT2-206ENST00000553529 ADGRF5Q8IZF2 1346 aa27.16■■□□□ 1.94
SHMT2-206ENST00000553529 NALCNQ8IZF0 1738 aa27.15■■□□□ 1.94
SHMT2-206ENST00000553529 PHLPP1O60346 1717 aa27.12■■□□□ 1.93
SHMT2-206ENST00000553529 ROBO2Q9HCK4 1378 aa27.09■■□□□ 1.93
SHMT2-206ENST00000553529 NCOA3Q9Y6Q9 1424 aa27.09■■□□□ 1.93
SHMT2-206ENST00000553529 VGFO15240 615 aaPredicted RBP27.09■■□□□ 1.93
SHMT2-206ENST00000553529 ASXL1Q8IXJ9 1541 aa27.09■■□□□ 1.93
SHMT2-206ENST00000553529 C19orf44Q9H6X5 657 aa27.08■■□□□ 1.93
SHMT2-206ENST00000553529 RPGRIP1LQ68CZ1 1315 aa27.08■■□□□ 1.93
SHMT2-206ENST00000553529 COL16A1Q07092 1604 aaPredicted RBP27.06■■□□□ 1.92
SHMT2-206ENST00000553529 ATF3P18847 181 aa27.04■■□□□ 1.92
SHMT2-206ENST00000553529 MST1RQ04912 1400 aa27.03■■□□□ 1.92
SHMT2-206ENST00000553529 ADGRL3Q9HAR2 1447 aa27.03■■□□□ 1.92
SHMT2-206ENST00000553529 CADPS2Q86UW7 1296 aa27.01■■□□□ 1.91
SHMT2-206ENST00000553529 DDX17Q92841 729 aaKnown RBP27.01■■□□□ 1.91
SHMT2-206ENST00000553529 TMEM132EQ6IEE7 984 aa27■■□□□ 1.91
SHMT2-206ENST00000553529 BRINP3Q76B58 766 aa27■■□□□ 1.91
SHMT2-206ENST00000553529 PIK3C2GO75747 1445 aa26.99■■□□□ 1.91
SHMT2-206ENST00000553529 PTCH1Q13635 1447 aa26.99■■□□□ 1.91
SHMT2-206ENST00000553529 RGS17Q9UGC6 210 aaPredicted RBP26.98■■□□□ 1.91
SHMT2-206ENST00000553529 ANKRD30BQ9BXX2 1392 aa26.97■■□□□ 1.91
SHMT2-206ENST00000553529 STK26Q9P289 416 aa26.97■■□□□ 1.91
SHMT2-206ENST00000553529 AHDC1Q5TGY3 1603 aaPredicted RBP26.97■■□□□ 1.91
SHMT2-206ENST00000553529 PHF23Q9BUL5 403 aaPredicted RBP26.96■■□□□ 1.91
SHMT2-206ENST00000553529 DCCP43146 1447 aa26.96■■□□□ 1.91
SHMT2-206ENST00000553529 PLEKHH1Q9ULM0 1364 aa26.96■■□□□ 1.91
SHMT2-206ENST00000553529 LRP6O75581 1613 aa26.93■■□□□ 1.9
SHMT2-206ENST00000553529 PRAG1Q86YV5 1406 aa26.92■■□□□ 1.9
SHMT2-206ENST00000553529 WAPLQ7Z5K2 1190 aa26.92■■□□□ 1.9
SHMT2-206ENST00000553529 NHSL1Q5SYE7 1610 aa26.91■■□□□ 1.9
SHMT2-206ENST00000553529 NRXN1Q9ULB1 1477 aa26.91■■□□□ 1.9
SHMT2-206ENST00000553529 CFAP70Q5T0N1 1121 aa26.9■■□□□ 1.9
SHMT2-206ENST00000553529 C1orf167Q5SNV9 1468 aa26.89■■□□□ 1.9
SHMT2-206ENST00000553529 MYOM2P54296 1465 aa26.88■■□□□ 1.89
SHMT2-206ENST00000553529 JCADQ9P266 1359 aa26.88■■□□□ 1.89
SHMT2-206ENST00000553529 SOCS7O14512 581 aa26.88■■□□□ 1.89
SHMT2-206ENST00000553529 KNDC1Q76NI1 1749 aa26.87■■□□□ 1.89
SHMT2-206ENST00000553529 ORAI2Q96SN7 254 aa26.87■■□□□ 1.89
SHMT2-206ENST00000553529 LRPPRCP42704 1394 aaKnown RBP26.86■■□□□ 1.89
SHMT2-206ENST00000553529 TECPR2O15040 1411 aa26.85■■□□□ 1.89
SHMT2-206ENST00000553529 YTHDC2Q9H6S0 1430 aaKnown RBP26.85■■□□□ 1.89
SHMT2-206ENST00000553529 NUTM2FA1L443 756 aa26.84■■□□□ 1.89
SHMT2-206ENST00000553529 KDM2AQ9Y2K7 1162 aa26.84■■□□□ 1.89
SHMT2-206ENST00000553529 SHPRHQ149N8 1683 aa26.84■■□□□ 1.89
SHMT2-206ENST00000553529 POTEAQ6S8J7 498 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms