RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 SETD5Q9C0A6 1442 aa28.12■■■□□ 2.09
HDAC4-217ENST00000553145 SLC26A8Q96RN1 970 aa28.08■■■□□ 2.09
HDAC4-217ENST00000553145 PLEKHG1Q9ULL1 1385 aa28.08■■■□□ 2.09
HDAC4-217ENST00000553145 SENP3Q9H4L4 574 aaPredicted RBP28.07■■■□□ 2.08
HDAC4-217ENST00000553145 PPP1R15AO75807 674 aaPredicted RBP28.06■■■□□ 2.08
HDAC4-217ENST00000553145 NUTM2DQ5VT03 806 aaPredicted RBP28.06■■■□□ 2.08
HDAC4-217ENST00000553145 FOXD1Q16676 465 aa28.05■■■□□ 2.08
HDAC4-217ENST00000553145 LRRC7Q96NW7 1537 aa28.05■■■□□ 2.08
HDAC4-217ENST00000553145 RAB3GAP2Q9H2M9 1393 aa28.05■■■□□ 2.08
HDAC4-217ENST00000553145 HDGFP51858 240 aaKnown RBP28.03■■■□□ 2.08
HDAC4-217ENST00000553145 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.03■■■□□ 2.08
HDAC4-217ENST00000553145 MPHOSPH9Q99550 1183 aa28.03■■■□□ 2.08
HDAC4-217ENST00000553145 BCANQ96GW7 911 aa28.01■■■□□ 2.07
HDAC4-217ENST00000553145 KIF1BO60333 1816 aa28.01■■■□□ 2.07
HDAC4-217ENST00000553145 UBAP1LF5GYI3 381 aa27.98■■■□□ 2.07
HDAC4-217ENST00000553145 ADAMTS13Q76LX8 1427 aa27.98■■■□□ 2.07
HDAC4-217ENST00000553145 NWD1Q149M9 1564 aa27.98■■■□□ 2.07
HDAC4-217ENST00000553145 NEXMIFQ5QGS0 1516 aa27.97■■■□□ 2.07
HDAC4-217ENST00000553145 ZNF326Q5BKZ1 582 aaKnown RBP27.97■■■□□ 2.07
HDAC4-217ENST00000553145 KCNA6P17658 529 aa27.95■■■□□ 2.06
HDAC4-217ENST00000553145 XIRP1Q702N8 1843 aaKnown RBP27.95■■■□□ 2.06
HDAC4-217ENST00000553145 ACIN1Q9UKV3 1341 aaKnown RBP27.94■■■□□ 2.06
HDAC4-217ENST00000553145 ALKQ9UM73 1620 aa27.94■■■□□ 2.06
HDAC4-217ENST00000553145 NRXN3Q9Y4C0 1643 aa27.93■■■□□ 2.06
HDAC4-217ENST00000553145 DIP2AQ14689 1571 aa27.93■■■□□ 2.06
HDAC4-217ENST00000553145 TBX22Q9Y458 520 aa27.92■■■□□ 2.06
HDAC4-217ENST00000553145 CHD2O14647 1828 aaKnown RBP27.91■■■□□ 2.06
HDAC4-217ENST00000553145 SETBP1Q9Y6X0 1596 aa27.9■■■□□ 2.06
HDAC4-217ENST00000553145 NKTRP30414 1462 aaKnown RBP27.89■■■□□ 2.06
HDAC4-217ENST00000553145 CCDC144AA2RUR9 1427 aa27.89■■■□□ 2.06
HDAC4-217ENST00000553145 TMEM94Q12767 1356 aa27.86■■■□□ 2.05
HDAC4-217ENST00000553145 TOM1O60784 492 aa27.86■■■□□ 2.05
HDAC4-217ENST00000553145 RBM33Q96EV2 1170 aaKnown RBP27.84■■■□□ 2.05
HDAC4-217ENST00000553145 PPLO60437 1756 aa27.83■■■□□ 2.05
HDAC4-217ENST00000553145 PROSER2Q86WR7 435 aaPredicted RBP27.83■■■□□ 2.05
HDAC4-217ENST00000553145 PIK3R4Q99570 1358 aa27.83■■■□□ 2.05
HDAC4-217ENST00000553145 SPATA31E1Q6ZUB1 1445 aa27.83■■■□□ 2.05
HDAC4-217ENST00000553145 PTPRUQ92729 1446 aa27.83■■■□□ 2.05
HDAC4-217ENST00000553145 PIP4K2BP78356 416 aa27.82■■■□□ 2.04
HDAC4-217ENST00000553145 HRCP23327 699 aa27.81■■■□□ 2.04
HDAC4-217ENST00000553145 RPGRIP1LQ68CZ1 1315 aa27.81■■■□□ 2.04
HDAC4-217ENST00000553145 SCAF1Q9H7N4 1312 aaKnown RBP27.8■■■□□ 2.04
HDAC4-217ENST00000553145 METP08581 1390 aa27.77■■■□□ 2.04
HDAC4-217ENST00000553145 XRN1Q8IZH2 1706 aaKnown RBP27.76■■■□□ 2.03
HDAC4-217ENST00000553145 VGFO15240 615 aaPredicted RBP27.76■■■□□ 2.03
HDAC4-217ENST00000553145 SETD1AO15047 1707 aaKnown RBP27.75■■■□□ 2.03
HDAC4-217ENST00000553145 IFT172Q9UG01 1749 aa27.75■■■□□ 2.03
HDAC4-217ENST00000553145 RGL3Q3MIN7 710 aa27.75■■■□□ 2.03
HDAC4-217ENST00000553145 AMOTL2Q9Y2J4 779 aa27.74■■■□□ 2.03
HDAC4-217ENST00000553145 ANKRD30BQ9BXX2 1392 aa27.73■■■□□ 2.03
HDAC4-217ENST00000553145 ADGRF5Q8IZF2 1346 aa27.69■■■□□ 2.02
HDAC4-217ENST00000553145 HSPA1LP34931 641 aa27.68■■■□□ 2.02
HDAC4-217ENST00000553145 MSH6P52701 1360 aa27.68■■■□□ 2.02
HDAC4-217ENST00000553145 NCOA3Q9Y6Q9 1424 aa27.67■■■□□ 2.02
HDAC4-217ENST00000553145 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.61■■■□□ 2.01
HDAC4-217ENST00000553145 PIK3C2GO75747 1445 aa27.6■■■□□ 2.01
HDAC4-217ENST00000553145 C14orf37Q86TY3 774 aa27.6■■■□□ 2.01
HDAC4-217ENST00000553145 FAM135BQ49AJ0 1406 aa27.59■■■□□ 2.01
HDAC4-217ENST00000553145 ROBO1Q9Y6N7 1651 aa27.59■■■□□ 2.01
HDAC4-217ENST00000553145 MYOM2P54296 1465 aa27.58■■■□□ 2.01
HDAC4-217ENST00000553145 ASXL1Q8IXJ9 1541 aa27.57■■■□□ 2
HDAC4-217ENST00000553145 PRAG1Q86YV5 1406 aa27.57■■■□□ 2
HDAC4-217ENST00000553145 NRXN1Q9ULB1 1477 aa27.57■■■□□ 2
HDAC4-217ENST00000553145 C19orf44Q9H6X5 657 aa27.56■■■□□ 2
HDAC4-217ENST00000553145 PTCH1Q13635 1447 aa27.56■■■□□ 2
HDAC4-217ENST00000553145 ROBO2Q9HCK4 1378 aa27.55■■■□□ 2
HDAC4-217ENST00000553145 NALCNQ8IZF0 1738 aa27.54■■■□□ 2
HDAC4-217ENST00000553145 SLAIN2Q9P270 581 aa27.54■■■□□ 2
HDAC4-217ENST00000553145 DCCP43146 1447 aa27.51■■□□□ 1.99
HDAC4-217ENST00000553145 ADGRL3Q9HAR2 1447 aa27.51■■□□□ 1.99
HDAC4-217ENST00000553145 CADPS2Q86UW7 1296 aa27.5■■□□□ 1.99
HDAC4-217ENST00000553145 ATF3P18847 181 aa27.49■■□□□ 1.99
HDAC4-217ENST00000553145 TMEM132EQ6IEE7 984 aa27.48■■□□□ 1.99
HDAC4-217ENST00000553145 C14orf93Q9H972 538 aaKnown RBP27.47■■□□□ 1.99
HDAC4-217ENST00000553145 LAMC1P11047 1609 aa27.47■■□□□ 1.99
HDAC4-217ENST00000553145 LRPPRCP42704 1394 aaKnown RBP27.47■■□□□ 1.99
HDAC4-217ENST00000553145 DHX57Q6P158 1386 aaKnown RBP27.47■■□□□ 1.99
HDAC4-217ENST00000553145 TECPR2O15040 1411 aa27.46■■□□□ 1.99
HDAC4-217ENST00000553145 KNDC1Q76NI1 1749 aa27.45■■□□□ 1.99
HDAC4-217ENST00000553145 CFAP70Q5T0N1 1121 aa27.45■■□□□ 1.98
HDAC4-217ENST00000553145 MST1RQ04912 1400 aa27.44■■□□□ 1.98
HDAC4-217ENST00000553145 TRIM26Q12899 539 aaPredicted RBP27.44■■□□□ 1.98
HDAC4-217ENST00000553145 DCAF11Q8TEB1 546 aa27.44■■□□□ 1.98
HDAC4-217ENST00000553145 STK26Q9P289 416 aa27.44■■□□□ 1.98
HDAC4-217ENST00000553145 KDM2AQ9Y2K7 1162 aa27.43■■□□□ 1.98
HDAC4-217ENST00000553145 YTHDC2Q9H6S0 1430 aaKnown RBP27.42■■□□□ 1.98
HDAC4-217ENST00000553145 ABCC11Q96J66 1382 aa27.42■■□□□ 1.98
HDAC4-217ENST00000553145 DISP3Q9P2K9 1392 aa27.41■■□□□ 1.98
HDAC4-217ENST00000553145 MED1Q15648 1581 aaPredicted RBP27.4■■□□□ 1.98
HDAC4-217ENST00000553145 PHLPP1O60346 1717 aa27.4■■□□□ 1.98
HDAC4-217ENST00000553145 PLEKHH1Q9ULM0 1364 aa27.38■■□□□ 1.97
HDAC4-217ENST00000553145 WAPLQ7Z5K2 1190 aa27.38■■□□□ 1.97
HDAC4-217ENST00000553145 ADGRB1O14514 1584 aa27.37■■□□□ 1.97
HDAC4-217ENST00000553145 BRINP3Q76B58 766 aa27.37■■□□□ 1.97
HDAC4-217ENST00000553145 COL16A1Q07092 1604 aaPredicted RBP27.36■■□□□ 1.97
HDAC4-217ENST00000553145 AHDC1Q5TGY3 1603 aaPredicted RBP27.36■■□□□ 1.97
HDAC4-217ENST00000553145 STAC3Q96MF2 364 aa27.34■■□□□ 1.97
HDAC4-217ENST00000553145 CDC42BPGQ6DT37 1551 aa27.34■■□□□ 1.97
HDAC4-217ENST00000553145 C1orf167Q5SNV9 1468 aa27.33■■□□□ 1.97
HDAC4-217ENST00000553145 SIN3AQ96ST3 1273 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms