RNA–Protein interactions for RNA: ENST00000550519.5

SMARCC2-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, human

TSL 3

Gene SMARCC2, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCC2-210	ENST00000550519	PHF23	Q9BUL5	403 aa	Predicted RBP	33.39	■■■□□ 2.94
SMARCC2-210	ENST00000550519	PLEKHG1	Q9ULL1	1385 aa		33.37	■■■□□ 2.93
SMARCC2-210	ENST00000550519	BCAN	Q96GW7	911 aa		33.37	■■■□□ 2.93
SMARCC2-210	ENST00000550519	NWD1	Q149M9	1564 aa		33.37	■■■□□ 2.93
SMARCC2-210	ENST00000550519	NKTR	P30414	1462 aa	Known RBP	33.37	■■■□□ 2.93
SMARCC2-210	ENST00000550519	RIMS2	Q9UQ26	1411 aa		33.36	■■■□□ 2.93
SMARCC2-210	ENST00000550519	GCC2	Q8IWJ2	1684 aa		33.36	■■■□□ 2.93
SMARCC2-210	ENST00000550519	HDGF	P51858	240 aa	Known RBP	33.36	■■■□□ 2.93
SMARCC2-210	ENST00000550519	RBM33	Q96EV2	1170 aa	Known RBP	33.36	■■■□□ 2.93
SMARCC2-210	ENST00000550519	TMEM131L	A2VDJ0	1609 aa		33.35	■■■□□ 2.93
SMARCC2-210	ENST00000550519	PPP1R15A	O75807	674 aa	Predicted RBP	33.31	■■■□□ 2.92
SMARCC2-210	ENST00000550519	MYO5B	Q9ULV0	1848 aa		33.3	■■■□□ 2.92
SMARCC2-210	ENST00000550519		E9PCH4	1651 aa		33.29	■■■□□ 2.92
SMARCC2-210	ENST00000550519	IQGAP3	Q86VI3	1631 aa		33.28	■■■□□ 2.92
SMARCC2-210	ENST00000550519	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.28	■■■□□ 2.92
SMARCC2-210	ENST00000550519	TBX22	Q9Y458	520 aa		33.28	■■■□□ 2.92
SMARCC2-210	ENST00000550519	NUP155	O75694	1391 aa		33.27	■■■□□ 2.92
SMARCC2-210	ENST00000550519	CHGA	P10645	457 aa	Known RBP	33.27	■■■□□ 2.92
SMARCC2-210	ENST00000550519	ITGAE	P38570	1179 aa		33.25	■■■□□ 2.91
SMARCC2-210	ENST00000550519	MSH6	P52701	1360 aa		33.24	■■■□□ 2.91
SMARCC2-210	ENST00000550519	CHD2	O14647	1828 aa	Known RBP	33.21	■■■□□ 2.91
SMARCC2-210	ENST00000550519	ROBO1	Q9Y6N7	1651 aa		33.21	■■■□□ 2.91
SMARCC2-210	ENST00000550519	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.21	■■■□□ 2.91
SMARCC2-210	ENST00000550519	ADAMTS13	Q76LX8	1427 aa		33.2	■■■□□ 2.91
SMARCC2-210	ENST00000550519	RGS17	Q9UGC6	210 aa	Predicted RBP	33.2	■■■□□ 2.91
SMARCC2-210	ENST00000550519	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.19	■■■□□ 2.9
SMARCC2-210	ENST00000550519	SLAIN2	Q9P270	581 aa		33.19	■■■□□ 2.9
SMARCC2-210	ENST00000550519	NCOA3	Q9Y6Q9	1424 aa		33.17	■■■□□ 2.9
SMARCC2-210	ENST00000550519	PIK3R4	Q99570	1358 aa		33.14	■■■□□ 2.9
SMARCC2-210	ENST00000550519	DIP2A	Q14689	1571 aa		33.13	■■■□□ 2.89
SMARCC2-210	ENST00000550519	C14orf37	Q86TY3	774 aa		33.04	■■■□□ 2.88
SMARCC2-210	ENST00000550519	C19orf44	Q9H6X5	657 aa		33.04	■■■□□ 2.88
SMARCC2-210	ENST00000550519	AMOTL2	Q9Y2J4	779 aa		33.03	■■■□□ 2.88
SMARCC2-210	ENST00000550519	PTPRU	Q92729	1446 aa		33.02	■■■□□ 2.88
SMARCC2-210	ENST00000550519	TRPM2	O94759	1503 aa		33.02	■■■□□ 2.88
SMARCC2-210	ENST00000550519	RRBP1	Q9P2E9	1410 aa	Known RBP	33.02	■■■□□ 2.88
SMARCC2-210	ENST00000550519	CADPS2	Q86UW7	1296 aa		33.01	■■■□□ 2.87
SMARCC2-210	ENST00000550519	JCAD	Q9P266	1359 aa		33	■■■□□ 2.87
SMARCC2-210	ENST00000550519	PHLPP1	O60346	1717 aa		32.99	■■■□□ 2.87
SMARCC2-210	ENST00000550519	POTEA	Q6S8J7	498 aa		32.99	■■■□□ 2.87
SMARCC2-210	ENST00000550519	SPHKAP	Q2M3C7	1700 aa		32.99	■■■□□ 2.87
SMARCC2-210	ENST00000550519	ATF3	P18847	181 aa		32.97	■■■□□ 2.87
SMARCC2-210	ENST00000550519	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.96	■■■□□ 2.87
SMARCC2-210	ENST00000550519	SETBP1	Q9Y6X0	1596 aa		32.96	■■■□□ 2.87
SMARCC2-210	ENST00000550519	NAIP	Q13075	1403 aa		32.95	■■■□□ 2.87
SMARCC2-210	ENST00000550519	ZNF326	Q5BKZ1	582 aa	Known RBP	32.95	■■■□□ 2.87
SMARCC2-210	ENST00000550519	NRXN3	Q9Y4C0	1643 aa		32.94	■■■□□ 2.86
SMARCC2-210	ENST00000550519	COL16A1	Q07092	1604 aa	Predicted RBP	32.93	■■■□□ 2.86
SMARCC2-210	ENST00000550519	MET	P08581	1390 aa		32.89	■■■□□ 2.86
SMARCC2-210	ENST00000550519	DCC	P43146	1447 aa		32.88	■■■□□ 2.85
SMARCC2-210	ENST00000550519	XRN1	Q8IZH2	1706 aa	Known RBP	32.88	■■■□□ 2.85
SMARCC2-210	ENST00000550519	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.88	■■■□□ 2.85
SMARCC2-210	ENST00000550519	CLTCL1	P53675	1640 aa		32.87	■■■□□ 2.85
SMARCC2-210	ENST00000550519	BRINP3	Q76B58	766 aa		32.86	■■■□□ 2.85
SMARCC2-210	ENST00000550519	SPATA31A6	Q5VVP1	1343 aa		32.85	■■■□□ 2.85
SMARCC2-210	ENST00000550519	NEXMIF	Q5QGS0	1516 aa		32.84	■■■□□ 2.85
SMARCC2-210	ENST00000550519	HFM1	A2PYH4	1435 aa		32.8	■■■□□ 2.84
SMARCC2-210	ENST00000550519	LRP6	O75581	1613 aa		32.8	■■■□□ 2.84
SMARCC2-210	ENST00000550519	MST1R	Q04912	1400 aa		32.77	■■■□□ 2.84
SMARCC2-210	ENST00000550519	TRIM52	Q96A61	297 aa		32.77	■■■□□ 2.84
SMARCC2-210	ENST00000550519	ADGRL3	Q9HAR2	1447 aa		32.74	■■■□□ 2.83
SMARCC2-210	ENST00000550519	ASXL1	Q8IXJ9	1541 aa		32.73	■■■□□ 2.83
SMARCC2-210	ENST00000550519	SHPRH	Q149N8	1683 aa		32.73	■■■□□ 2.83
SMARCC2-210	ENST00000550519	KIF1B	O60333	1816 aa		32.72	■■■□□ 2.83
SMARCC2-210	ENST00000550519	VGF	O15240	615 aa	Predicted RBP	32.72	■■■□□ 2.83
SMARCC2-210	ENST00000550519	MEX3C	Q5U5Q3	659 aa	Known RBP	32.71	■■■□□ 2.83
SMARCC2-210	ENST00000550519	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.71	■■■□□ 2.83
SMARCC2-210	ENST00000550519	SETD5	Q9C0A6	1442 aa		32.69	■■■□□ 2.82
SMARCC2-210	ENST00000550519	RPGRIP1L	Q68CZ1	1315 aa		32.69	■■■□□ 2.82
SMARCC2-210	ENST00000550519	ZNF772	Q68DY9	489 aa	Predicted RBP	32.67	■■■□□ 2.82
SMARCC2-210	ENST00000550519	PTCH1	Q13635	1447 aa		32.64	■■■□□ 2.82
SMARCC2-210	ENST00000550519	NHSL1	Q5SYE7	1610 aa		32.63	■■■□□ 2.81
SMARCC2-210	ENST00000550519	LRRC59	Q96AG4	307 aa	Known RBP	32.63	■■■□□ 2.81
SMARCC2-210	ENST00000550519	NALCN	Q8IZF0	1738 aa		32.62	■■■□□ 2.81
SMARCC2-210	ENST00000550519	ROBO2	Q9HCK4	1378 aa		32.61	■■■□□ 2.81
SMARCC2-210	ENST00000550519	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.61	■■■□□ 2.81
SMARCC2-210	ENST00000550519	NUTM2E	B1AL46	878 aa	Predicted RBP	32.61	■■■□□ 2.81
SMARCC2-210	ENST00000550519	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.61	■■■□□ 2.81
SMARCC2-210	ENST00000550519	PRAG1	Q86YV5	1406 aa		32.6	■■■□□ 2.81
SMARCC2-210	ENST00000550519	SETD1A	O15047	1707 aa	Known RBP	32.6	■■■□□ 2.81
SMARCC2-210	ENST00000550519	DDX17	Q92841	729 aa	Known RBP	32.59	■■■□□ 2.81
SMARCC2-210	ENST00000550519	C1orf167	Q5SNV9	1468 aa		32.58	■■■□□ 2.81
SMARCC2-210	ENST00000550519	FOXD1	Q16676	465 aa		32.56	■■■□□ 2.8
SMARCC2-210	ENST00000550519	PNPLA6	Q8IY17	1366 aa		32.54	■■■□□ 2.8
SMARCC2-210	ENST00000550519	PPL	O60437	1756 aa		32.53	■■■□□ 2.8
SMARCC2-210	ENST00000550519	RXRB	P28702	533 aa		32.5	■■■□□ 2.79
SMARCC2-210	ENST00000550519	AFF2	P51816	1311 aa		32.5	■■■□□ 2.79
SMARCC2-210	ENST00000550519	ORAI2	Q96SN7	254 aa		32.49	■■■□□ 2.79
SMARCC2-210	ENST00000550519	CCDC144A	A2RUR9	1427 aa		32.48	■■■□□ 2.79
SMARCC2-210	ENST00000550519	LAMC1	P11047	1609 aa		32.47	■■■□□ 2.79
SMARCC2-210	ENST00000550519	ADGRF5	Q8IZF2	1346 aa		32.47	■■■□□ 2.79
SMARCC2-210	ENST00000550519	MPHOSPH9	Q99550	1183 aa		32.46	■■■□□ 2.79
SMARCC2-210	ENST00000550519	SOS2	Q07890	1332 aa	Predicted RBP	32.46	■■■□□ 2.79
SMARCC2-210	ENST00000550519	SPATA31E1	Q6ZUB1	1445 aa		32.45	■■■□□ 2.79
SMARCC2-210	ENST00000550519	RGL3	Q3MIN7	710 aa		32.43	■■■□□ 2.78
SMARCC2-210	ENST00000550519	C8orf37	Q96NL8	207 aa		32.43	■■■□□ 2.78
SMARCC2-210	ENST00000550519	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.42	■■■□□ 2.78
SMARCC2-210	ENST00000550519	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.42	■■■□□ 2.78
SMARCC2-210	ENST00000550519	ANKRD30B	Q9BXX2	1392 aa		32.41	■■■□□ 2.78
SMARCC2-210	ENST00000550519	TECPR2	O15040	1411 aa		32.36	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms