RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 CERKQ8TCT0 537 aa38.46■■■■□ 3.75
CPSF6-205ENST00000550075 HRCP23327 699 aa38.45■■■■□ 3.75
CPSF6-205ENST00000550075 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.44■■■■□ 3.74
CPSF6-205ENST00000550075 PPP1R15AO75807 674 aaPredicted RBP38.43■■■■□ 3.74
CPSF6-205ENST00000550075 CPS1P31327 1500 aa38.38■■■■□ 3.74
CPSF6-205ENST00000550075 FOXD1Q16676 465 aa38.38■■■■□ 3.73
CPSF6-205ENST00000550075 PLEKHG1Q9ULL1 1385 aa38.37■■■■□ 3.73
CPSF6-205ENST00000550075 CCDC144AA2RUR9 1427 aa38.37■■■■□ 3.73
CPSF6-205ENST00000550075 IQSEC2Q5JU85 1478 aa38.36■■■■□ 3.73
CPSF6-205ENST00000550075 ZNF326Q5BKZ1 582 aaKnown RBP38.35■■■■□ 3.73
CPSF6-205ENST00000550075 BCANQ96GW7 911 aa38.33■■■■□ 3.73
CPSF6-205ENST00000550075 FBXO41Q8TF61 875 aa38.28■■■■□ 3.72
CPSF6-205ENST00000550075 NEXMIFQ5QGS0 1516 aa38.26■■■■□ 3.72
CPSF6-205ENST00000550075 DIP2AQ14689 1571 aa38.25■■■■□ 3.71
CPSF6-205ENST00000550075 NUTM2DQ5VT03 806 aaPredicted RBP38.23■■■■□ 3.71
CPSF6-205ENST00000550075 SLC26A8Q96RN1 970 aa38.23■■■■□ 3.71
CPSF6-205ENST00000550075 STRCP1A6NGW2 1772 aa38.21■■■■□ 3.71
CPSF6-205ENST00000550075 RPGRIP1LQ68CZ1 1315 aa38.18■■■■□ 3.7
CPSF6-205ENST00000550075 TRIM26Q12899 539 aaPredicted RBP38.17■■■■□ 3.7
CPSF6-205ENST00000550075 SETBP1Q9Y6X0 1596 aa38.16■■■■□ 3.7
CPSF6-205ENST00000550075 ILDR1Q86SU0 546 aaPredicted RBP38.16■■■■□ 3.7
CPSF6-205ENST00000550075 SENP3Q9H4L4 574 aaPredicted RBP38.15■■■■□ 3.7
CPSF6-205ENST00000550075 NWD1Q149M9 1564 aa38.14■■■■□ 3.7
CPSF6-205ENST00000550075 ADAMTS13Q76LX8 1427 aa38.14■■■■□ 3.7
CPSF6-205ENST00000550075 PPLO60437 1756 aa38.14■■■■□ 3.7
CPSF6-205ENST00000550075 TBX22Q9Y458 520 aa38.14■■■■□ 3.7
CPSF6-205ENST00000550075 SPATA31E1Q6ZUB1 1445 aa38.13■■■■□ 3.7
CPSF6-205ENST00000550075 KCNA6P17658 529 aa38.11■■■■□ 3.69
CPSF6-205ENST00000550075 LRRC7Q96NW7 1537 aa38.11■■■■□ 3.69
CPSF6-205ENST00000550075 NKTRP30414 1462 aaKnown RBP38.1■■■■□ 3.69
CPSF6-205ENST00000550075 ANKRD30BQ9BXX2 1392 aa38.1■■■■□ 3.69
CPSF6-205ENST00000550075 NRXN3Q9Y4C0 1643 aa38.1■■■■□ 3.69
CPSF6-205ENST00000550075 VGFO15240 615 aaPredicted RBP38.1■■■■□ 3.69
CPSF6-205ENST00000550075 PIK3R4Q99570 1358 aa38.08■■■■□ 3.69
CPSF6-205ENST00000550075 CHD2O14647 1828 aaKnown RBP38.08■■■■□ 3.69
CPSF6-205ENST00000550075 IFT172Q9UG01 1749 aa38.05■■■■□ 3.68
CPSF6-205ENST00000550075 RGL3Q3MIN7 710 aa38.03■■■■□ 3.68
CPSF6-205ENST00000550075 UBAP1LF5GYI3 381 aa37.97■■■■□ 3.67
CPSF6-205ENST00000550075 XIRP1Q702N8 1843 aaKnown RBP37.94■■■■□ 3.66
CPSF6-205ENST00000550075 PROSER2Q86WR7 435 aaPredicted RBP37.94■■■■□ 3.66
CPSF6-205ENST00000550075 TMEM94Q12767 1356 aa37.93■■■■□ 3.66
CPSF6-205ENST00000550075 TOM1O60784 492 aa37.91■■■■□ 3.66
CPSF6-205ENST00000550075 ALKQ9UM73 1620 aa37.9■■■■□ 3.66
CPSF6-205ENST00000550075 XRN1Q8IZH2 1706 aaKnown RBP37.9■■■■□ 3.66
CPSF6-205ENST00000550075 SETD1AO15047 1707 aaKnown RBP37.9■■■■□ 3.66
CPSF6-205ENST00000550075 MYOM2P54296 1465 aa37.89■■■■□ 3.66
CPSF6-205ENST00000550075 METP08581 1390 aa37.87■■■■□ 3.65
CPSF6-205ENST00000550075 PTPRUQ92729 1446 aa37.87■■■■□ 3.65
CPSF6-205ENST00000550075 AMOTL2Q9Y2J4 779 aa37.86■■■■□ 3.65
CPSF6-205ENST00000550075 ADGRF5Q8IZF2 1346 aa37.86■■■■□ 3.65
CPSF6-205ENST00000550075 PIK3C2GO75747 1445 aa37.83■■■■□ 3.65
CPSF6-205ENST00000550075 NCOA3Q9Y6Q9 1424 aa37.82■■■■□ 3.64
CPSF6-205ENST00000550075 MSH6P52701 1360 aa37.8■■■■□ 3.64
CPSF6-205ENST00000550075 LAMC1P11047 1609 aa37.79■■■■□ 3.64
CPSF6-205ENST00000550075 NRXN1Q9ULB1 1477 aa37.78■■■■□ 3.64
CPSF6-205ENST00000550075 SCAF1Q9H7N4 1312 aaKnown RBP37.76■■■■□ 3.64
CPSF6-205ENST00000550075 RBM33Q96EV2 1170 aaKnown RBP37.75■■■■□ 3.63
CPSF6-205ENST00000550075 DHX57Q6P158 1386 aaKnown RBP37.74■■■■□ 3.63
CPSF6-205ENST00000550075 C14orf37Q86TY3 774 aa37.74■■■■□ 3.63
CPSF6-205ENST00000550075 STAC3Q96MF2 364 aa37.74■■■■□ 3.63
CPSF6-205ENST00000550075 PTCH1Q13635 1447 aa37.72■■■■□ 3.63
CPSF6-205ENST00000550075 PRAG1Q86YV5 1406 aa37.72■■■■□ 3.63
CPSF6-205ENST00000550075 PIP4K2BP78356 416 aa37.72■■■■□ 3.63
CPSF6-205ENST00000550075 DCAF11Q8TEB1 546 aa37.68■■■■□ 3.62
CPSF6-205ENST00000550075 ASXL1Q8IXJ9 1541 aa37.65■■■■□ 3.62
CPSF6-205ENST00000550075 C14orf93Q9H972 538 aaKnown RBP37.63■■■■□ 3.61
CPSF6-205ENST00000550075 KDM2AQ9Y2K7 1162 aa37.63■■■■□ 3.61
CPSF6-205ENST00000550075 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.63■■■■□ 3.61
CPSF6-205ENST00000550075 KNDC1Q76NI1 1749 aa37.62■■■■□ 3.61
CPSF6-205ENST00000550075 C19orf44Q9H6X5 657 aa37.62■■■■□ 3.61
CPSF6-205ENST00000550075 DCCP43146 1447 aa37.61■■■■□ 3.61
CPSF6-205ENST00000550075 LRPPRCP42704 1394 aaKnown RBP37.61■■■■□ 3.61
CPSF6-205ENST00000550075 ADGRL3Q9HAR2 1447 aa37.6■■■■□ 3.61
CPSF6-205ENST00000550075 ROBO2Q9HCK4 1378 aa37.59■■■■□ 3.61
CPSF6-205ENST00000550075 TECPR2O15040 1411 aa37.59■■■■□ 3.61
CPSF6-205ENST00000550075 CADPS2Q86UW7 1296 aa37.58■■■■□ 3.61
CPSF6-205ENST00000550075 ATF3P18847 181 aa37.57■■■■□ 3.6
CPSF6-205ENST00000550075 CFAP70Q5T0N1 1121 aa37.57■■■■□ 3.6
CPSF6-205ENST00000550075 NALCNQ8IZF0 1738 aa37.57■■■■□ 3.6
CPSF6-205ENST00000550075 YTHDC2Q9H6S0 1430 aaKnown RBP37.57■■■■□ 3.6
CPSF6-205ENST00000550075 ABCC11Q96J66 1382 aa37.55■■■■□ 3.6
CPSF6-205ENST00000550075 TMEM132EQ6IEE7 984 aa37.55■■■■□ 3.6
CPSF6-205ENST00000550075 STK26Q9P289 416 aa37.53■■■■□ 3.6
CPSF6-205ENST00000550075 FAM135BQ49AJ0 1406 aa37.53■■■■□ 3.6
CPSF6-205ENST00000550075 PCGF6Q9BYE7 350 aa37.51■■■■□ 3.6
CPSF6-205ENST00000550075 ROBO1Q9Y6N7 1651 aa37.5■■■■□ 3.59
CPSF6-205ENST00000550075 SIN3AQ96ST3 1273 aa37.5■■■■□ 3.59
CPSF6-205ENST00000550075 SLAIN2Q9P270 581 aa37.5■■■■□ 3.59
CPSF6-205ENST00000550075 NEUROD1Q13562 356 aa37.48■■■■□ 3.59
CPSF6-205ENST00000550075 ADGRB1O14514 1584 aa37.47■■■■□ 3.59
CPSF6-205ENST00000550075 KIAA1210Q9ULL0 1709 aa37.47■■■■□ 3.59
CPSF6-205ENST00000550075 HSPA1LP34931 641 aa37.45■■■■□ 3.59
CPSF6-205ENST00000550075 DLC1Q96QB1 1528 aa37.42■■■■□ 3.58
CPSF6-205ENST00000550075 SIRT1Q96EB6 747 aa37.41■■■■□ 3.58
CPSF6-205ENST00000550075 CDC42BPGQ6DT37 1551 aa37.4■■■■□ 3.58
CPSF6-205ENST00000550075 L3MBTL2Q969R5 705 aa37.4■■■■□ 3.58
CPSF6-205ENST00000550075 MST1RQ04912 1400 aa37.38■■■■□ 3.57
CPSF6-205ENST00000550075 WAPLQ7Z5K2 1190 aa37.35■■■■□ 3.57
CPSF6-205ENST00000550075 PLEKHH1Q9ULM0 1364 aa37.33■■■■□ 3.57
CPSF6-205ENST00000550075 TONSLQ96HA7 1378 aa37.32■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms