RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.25■□□□□ 0.67
PRPF40B-210ENST00000549547 CERKQ8TCT0 537 aa19.24■□□□□ 0.67
PRPF40B-210ENST00000549547 PPP1R15AO75807 674 aaPredicted RBP19.23■□□□□ 0.67
PRPF40B-210ENST00000549547 ZNF335Q9H4Z2 1342 aaPredicted RBP19.23■□□□□ 0.67
PRPF40B-210ENST00000549547 IQSEC2Q5JU85 1478 aa19.22■□□□□ 0.67
PRPF40B-210ENST00000549547 CPS1P31327 1500 aa19.22■□□□□ 0.67
PRPF40B-210ENST00000549547 CCDC144AA2RUR9 1427 aa19.21■□□□□ 0.67
PRPF40B-210ENST00000549547 PLEKHG1Q9ULL1 1385 aa19.2■□□□□ 0.66
PRPF40B-210ENST00000549547 ZNF326Q5BKZ1 582 aaKnown RBP19.19■□□□□ 0.66
PRPF40B-210ENST00000549547 BCANQ96GW7 911 aa19.18■□□□□ 0.66
PRPF40B-210ENST00000549547 FOXD1Q16676 465 aa19.17■□□□□ 0.66
PRPF40B-210ENST00000549547 DIP2AQ14689 1571 aa19.16■□□□□ 0.66
PRPF40B-210ENST00000549547 FBXO41Q8TF61 875 aa19.16■□□□□ 0.66
PRPF40B-210ENST00000549547 NEXMIFQ5QGS0 1516 aa19.15■□□□□ 0.66
PRPF40B-210ENST00000549547 STRCP1A6NGW2 1772 aa19.14■□□□□ 0.65
PRPF40B-210ENST00000549547 RPGRIP1LQ68CZ1 1315 aa19.13■□□□□ 0.65
PRPF40B-210ENST00000549547 SLC26A8Q96RN1 970 aa19.12■□□□□ 0.65
PRPF40B-210ENST00000549547 PPLO60437 1756 aa19.11■□□□□ 0.65
PRPF40B-210ENST00000549547 TRIM26Q12899 539 aaPredicted RBP19.11■□□□□ 0.65
PRPF40B-210ENST00000549547 SETBP1Q9Y6X0 1596 aa19.1■□□□□ 0.65
PRPF40B-210ENST00000549547 NUTM2DQ5VT03 806 aaPredicted RBP19.1■□□□□ 0.65
PRPF40B-210ENST00000549547 TBX22Q9Y458 520 aa19.1■□□□□ 0.65
PRPF40B-210ENST00000549547 NWD1Q149M9 1564 aa19.1■□□□□ 0.65
PRPF40B-210ENST00000549547 CHD2O14647 1828 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-210ENST00000549547 SPATA31E1Q6ZUB1 1445 aa19.08■□□□□ 0.65
PRPF40B-210ENST00000549547 VGFO15240 615 aaPredicted RBP19.08■□□□□ 0.64
PRPF40B-210ENST00000549547 KCNA6P17658 529 aa19.08■□□□□ 0.64
PRPF40B-210ENST00000549547 ADAMTS13Q76LX8 1427 aa19.08■□□□□ 0.64
PRPF40B-210ENST00000549547 PIK3R4Q99570 1358 aa19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 NRXN3Q9Y4C0 1643 aa19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 LRRC7Q96NW7 1537 aa19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 ILDR1Q86SU0 546 aaPredicted RBP19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 IFT172Q9UG01 1749 aa19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 NKTRP30414 1462 aaKnown RBP19.07■□□□□ 0.64
PRPF40B-210ENST00000549547 ANKRD30BQ9BXX2 1392 aa19.06■□□□□ 0.64
PRPF40B-210ENST00000549547 SENP3Q9H4L4 574 aaPredicted RBP19.04■□□□□ 0.64
PRPF40B-210ENST00000549547 RGL3Q3MIN7 710 aa19.02■□□□□ 0.64
PRPF40B-210ENST00000549547 XIRP1Q702N8 1843 aaKnown RBP19.01■□□□□ 0.63
PRPF40B-210ENST00000549547 UBAP1LF5GYI3 381 aa18.99■□□□□ 0.63
PRPF40B-210ENST00000549547 SETD1AO15047 1707 aaKnown RBP18.98■□□□□ 0.63
PRPF40B-210ENST00000549547 TOM1O60784 492 aa18.98■□□□□ 0.63
PRPF40B-210ENST00000549547 PROSER2Q86WR7 435 aaPredicted RBP18.98■□□□□ 0.63
PRPF40B-210ENST00000549547 XRN1Q8IZH2 1706 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-210ENST00000549547 TMEM94Q12767 1356 aa18.97■□□□□ 0.63
PRPF40B-210ENST00000549547 ALKQ9UM73 1620 aa18.97■□□□□ 0.63
PRPF40B-210ENST00000549547 MYOM2P54296 1465 aa18.97■□□□□ 0.63
PRPF40B-210ENST00000549547 NCOA3Q9Y6Q9 1424 aa18.95■□□□□ 0.62
PRPF40B-210ENST00000549547 LAMC1P11047 1609 aa18.95■□□□□ 0.62
PRPF40B-210ENST00000549547 AMOTL2Q9Y2J4 779 aa18.94■□□□□ 0.62
PRPF40B-210ENST00000549547 METP08581 1390 aa18.93■□□□□ 0.62
PRPF40B-210ENST00000549547 PIK3C2GO75747 1445 aa18.93■□□□□ 0.62
PRPF40B-210ENST00000549547 PTPRUQ92729 1446 aa18.93■□□□□ 0.62
PRPF40B-210ENST00000549547 STAC3Q96MF2 364 aa18.93■□□□□ 0.62
PRPF40B-210ENST00000549547 ADGRF5Q8IZF2 1346 aa18.93■□□□□ 0.62
PRPF40B-210ENST00000549547 MSH6P52701 1360 aa18.92■□□□□ 0.62
PRPF40B-210ENST00000549547 NRXN1Q9ULB1 1477 aa18.91■□□□□ 0.62
PRPF40B-210ENST00000549547 PRAG1Q86YV5 1406 aa18.9■□□□□ 0.62
PRPF40B-210ENST00000549547 C14orf37Q86TY3 774 aa18.88■□□□□ 0.61
PRPF40B-210ENST00000549547 DHX57Q6P158 1386 aaKnown RBP18.88■□□□□ 0.61
PRPF40B-210ENST00000549547 PTCH1Q13635 1447 aa18.88■□□□□ 0.61
PRPF40B-210ENST00000549547 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
PRPF40B-210ENST00000549547 PIP4K2BP78356 416 aa18.86■□□□□ 0.61
PRPF40B-210ENST00000549547 DCAF11Q8TEB1 546 aa18.86■□□□□ 0.61
PRPF40B-210ENST00000549547 KNDC1Q76NI1 1749 aa18.86■□□□□ 0.61
PRPF40B-210ENST00000549547 RBM33Q96EV2 1170 aaKnown RBP18.85■□□□□ 0.61
PRPF40B-210ENST00000549547 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.85■□□□□ 0.61
PRPF40B-210ENST00000549547 C19orf44Q9H6X5 657 aa18.84■□□□□ 0.61
PRPF40B-210ENST00000549547 C14orf93Q9H972 538 aaKnown RBP18.84■□□□□ 0.61
PRPF40B-210ENST00000549547 ASXL1Q8IXJ9 1541 aa18.83■□□□□ 0.6
PRPF40B-210ENST00000549547 DCCP43146 1447 aa18.83■□□□□ 0.6
PRPF40B-210ENST00000549547 LRPPRCP42704 1394 aaKnown RBP18.82■□□□□ 0.6
PRPF40B-210ENST00000549547 KDM2AQ9Y2K7 1162 aa18.82■□□□□ 0.6
PRPF40B-210ENST00000549547 TECPR2O15040 1411 aa18.82■□□□□ 0.6
PRPF40B-210ENST00000549547 NALCNQ8IZF0 1738 aa18.81■□□□□ 0.6
PRPF40B-210ENST00000549547 ATF3P18847 181 aa18.81■□□□□ 0.6
PRPF40B-210ENST00000549547 CADPS2Q86UW7 1296 aa18.81■□□□□ 0.6
PRPF40B-210ENST00000549547 ADGRL3Q9HAR2 1447 aa18.81■□□□□ 0.6
PRPF40B-210ENST00000549547 YTHDC2Q9H6S0 1430 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-210ENST00000549547 ABCC11Q96J66 1382 aa18.8■□□□□ 0.6
PRPF40B-210ENST00000549547 ROBO2Q9HCK4 1378 aa18.8■□□□□ 0.6
PRPF40B-210ENST00000549547 CFAP70Q5T0N1 1121 aa18.79■□□□□ 0.6
PRPF40B-210ENST00000549547 FAM135BQ49AJ0 1406 aa18.79■□□□□ 0.6
PRPF40B-210ENST00000549547 KIAA1210Q9ULL0 1709 aa18.79■□□□□ 0.6
PRPF40B-210ENST00000549547 ROBO1Q9Y6N7 1651 aa18.78■□□□□ 0.6
PRPF40B-210ENST00000549547 TMEM132EQ6IEE7 984 aa18.77■□□□□ 0.6
PRPF40B-210ENST00000549547 SLAIN2Q9P270 581 aa18.77■□□□□ 0.6
PRPF40B-210ENST00000549547 STK26Q9P289 416 aa18.77■□□□□ 0.6
PRPF40B-210ENST00000549547 PCGF6Q9BYE7 350 aa18.76■□□□□ 0.59
PRPF40B-210ENST00000549547 ADGRB1O14514 1584 aa18.76■□□□□ 0.59
PRPF40B-210ENST00000549547 SIRT1Q96EB6 747 aa18.75■□□□□ 0.59
PRPF40B-210ENST00000549547 SIN3AQ96ST3 1273 aa18.75■□□□□ 0.59
PRPF40B-210ENST00000549547 DLC1Q96QB1 1528 aa18.74■□□□□ 0.59
PRPF40B-210ENST00000549547 NEUROD1Q13562 356 aa18.74■□□□□ 0.59
PRPF40B-210ENST00000549547 HSPA1LP34931 641 aa18.73■□□□□ 0.59
PRPF40B-210ENST00000549547 CDC42BPGQ6DT37 1551 aa18.72■□□□□ 0.59
PRPF40B-210ENST00000549547 L3MBTL2Q969R5 705 aa18.71■□□□□ 0.59
PRPF40B-210ENST00000549547 MST1RQ04912 1400 aa18.7■□□□□ 0.58
PRPF40B-210ENST00000549547 WAPLQ7Z5K2 1190 aa18.68■□□□□ 0.58
PRPF40B-210ENST00000549547 PHLPP1O60346 1717 aa18.68■□□□□ 0.58
PRPF40B-210ENST00000549547 TONSLQ96HA7 1378 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms