RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 KCNA6P17658 529 aa28.16■■■□□ 2.1
CHMP1A-207ENST00000549328 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.16■■■□□ 2.1
CHMP1A-207ENST00000549328 PLEKHG1Q9ULL1 1385 aa28.15■■■□□ 2.1
CHMP1A-207ENST00000549328 PIP4K2BP78356 416 aa28.14■■■□□ 2.1
CHMP1A-207ENST00000549328 PPP1R15AO75807 674 aaPredicted RBP28.13■■■□□ 2.09
CHMP1A-207ENST00000549328 BCANQ96GW7 911 aa28.13■■■□□ 2.09
CHMP1A-207ENST00000549328 SCAF1Q9H7N4 1312 aaKnown RBP28.13■■■□□ 2.09
CHMP1A-207ENST00000549328 ALKQ9UM73 1620 aa28.1■■■□□ 2.09
CHMP1A-207ENST00000549328 SPHKAPQ2M3C7 1700 aa28.08■■■□□ 2.09
CHMP1A-207ENST00000549328 TBX22Q9Y458 520 aa28.07■■■□□ 2.08
CHMP1A-207ENST00000549328 HSPA1LP34931 641 aa28.05■■■□□ 2.08
CHMP1A-207ENST00000549328 TRIM52Q96A61 297 aa28.05■■■□□ 2.08
CHMP1A-207ENST00000549328 PROSER2Q86WR7 435 aaPredicted RBP28.04■■■□□ 2.08
CHMP1A-207ENST00000549328 XIRP1Q702N8 1843 aaKnown RBP28.04■■■□□ 2.08
CHMP1A-207ENST00000549328 NKTRP30414 1462 aaKnown RBP28.03■■■□□ 2.08
CHMP1A-207ENST00000549328 TMEM94Q12767 1356 aa28.03■■■□□ 2.08
CHMP1A-207ENST00000549328 NWD1Q149M9 1564 aa28.03■■■□□ 2.08
CHMP1A-207ENST00000549328 DISP3Q9P2K9 1392 aa28.02■■■□□ 2.08
CHMP1A-207ENST00000549328 NUTM2DQ5VT03 806 aaPredicted RBP28.01■■■□□ 2.07
CHMP1A-207ENST00000549328 SENP3Q9H4L4 574 aaPredicted RBP28■■■□□ 2.07
CHMP1A-207ENST00000549328 TRPM2O94759 1503 aa27.99■■■□□ 2.07
CHMP1A-207ENST00000549328 ADAMTS13Q76LX8 1427 aa27.99■■■□□ 2.07
CHMP1A-207ENST00000549328 CHD2O14647 1828 aaKnown RBP27.98■■■□□ 2.07
CHMP1A-207ENST00000549328 SLC4A1APQ9BWU0 796 aaKnown RBP27.98■■■□□ 2.07
CHMP1A-207ENST00000549328 PIK3R4Q99570 1358 aa27.98■■■□□ 2.07
CHMP1A-207ENST00000549328 DIP2AQ14689 1571 aa27.97■■■□□ 2.07
CHMP1A-207ENST00000549328 ZNF326Q5BKZ1 582 aaKnown RBP27.95■■■□□ 2.06
CHMP1A-207ENST00000549328 CLTCL1P53675 1640 aa27.94■■■□□ 2.06
CHMP1A-207ENST00000549328 RBM33Q96EV2 1170 aaKnown RBP27.92■■■□□ 2.06
CHMP1A-207ENST00000549328 FAM135BQ49AJ0 1406 aa27.9■■■□□ 2.06
CHMP1A-207ENST00000549328 NCOA3Q9Y6Q9 1424 aa27.9■■■□□ 2.06
CHMP1A-207ENST00000549328 ACIN1Q9UKV3 1341 aaKnown RBP27.9■■■□□ 2.06
CHMP1A-207ENST00000549328 MSH6P52701 1360 aa27.89■■■□□ 2.06
CHMP1A-207ENST00000549328 KIF1BO60333 1816 aa27.88■■■□□ 2.05
CHMP1A-207ENST00000549328 SETBP1Q9Y6X0 1596 aa27.87■■■□□ 2.05
CHMP1A-207ENST00000549328 NEXMIFQ5QGS0 1516 aa27.85■■■□□ 2.05
CHMP1A-207ENST00000549328 AMOTL2Q9Y2J4 779 aa27.84■■■□□ 2.05
CHMP1A-207ENST00000549328 NRXN3Q9Y4C0 1643 aa27.83■■■□□ 2.05
CHMP1A-207ENST00000549328 MPHOSPH9Q99550 1183 aa27.82■■■□□ 2.04
CHMP1A-207ENST00000549328 RPGRIP1LQ68CZ1 1315 aa27.82■■■□□ 2.04
CHMP1A-207ENST00000549328 VGFO15240 615 aaPredicted RBP27.81■■■□□ 2.04
CHMP1A-207ENST00000549328 SLAIN2Q9P270 581 aa27.81■■■□□ 2.04
CHMP1A-207ENST00000549328 PTPRUQ92729 1446 aa27.81■■■□□ 2.04
CHMP1A-207ENST00000549328 ILDR2Q71H61 639 aa27.8■■■□□ 2.04
CHMP1A-207ENST00000549328 SETD5Q9C0A6 1442 aa27.79■■■□□ 2.04
CHMP1A-207ENST00000549328 FOXD1Q16676 465 aa27.78■■■□□ 2.04
CHMP1A-207ENST00000549328 C19orf44Q9H6X5 657 aa27.78■■■□□ 2.04
CHMP1A-207ENST00000549328 C14orf37Q86TY3 774 aa27.77■■■□□ 2.04
CHMP1A-207ENST00000549328 METP08581 1390 aa27.76■■■□□ 2.03
CHMP1A-207ENST00000549328 MED1Q15648 1581 aaPredicted RBP27.76■■■□□ 2.03
CHMP1A-207ENST00000549328 ROBO1Q9Y6N7 1651 aa27.75■■■□□ 2.03
CHMP1A-207ENST00000549328 CADPS2Q86UW7 1296 aa27.74■■■□□ 2.03
CHMP1A-207ENST00000549328 CCDC144AA2RUR9 1427 aa27.74■■■□□ 2.03
CHMP1A-207ENST00000549328 XRN1Q8IZH2 1706 aaKnown RBP27.73■■■□□ 2.03
CHMP1A-207ENST00000549328 ATF3P18847 181 aa27.71■■■□□ 2.03
CHMP1A-207ENST00000549328 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.7■■■□□ 2.02
CHMP1A-207ENST00000549328 DCCP43146 1447 aa27.67■■■□□ 2.02
CHMP1A-207ENST00000549328 PPLO60437 1756 aa27.66■■■□□ 2.02
CHMP1A-207ENST00000549328 RAB3GAP2Q9H2M9 1393 aa27.66■■■□□ 2.02
CHMP1A-207ENST00000549328 SPATA31E1Q6ZUB1 1445 aa27.66■■■□□ 2.02
CHMP1A-207ENST00000549328 RGL3Q3MIN7 710 aa27.63■■■□□ 2.01
CHMP1A-207ENST00000549328 SOCS7O14512 581 aa27.62■■■□□ 2.01
CHMP1A-207ENST00000549328 ANKRD30BQ9BXX2 1392 aa27.61■■■□□ 2.01
CHMP1A-207ENST00000549328 SETD1AO15047 1707 aaKnown RBP27.61■■■□□ 2.01
CHMP1A-207ENST00000549328 PHF23Q9BUL5 403 aaPredicted RBP27.61■■■□□ 2.01
CHMP1A-207ENST00000549328 HRCP23327 699 aa27.59■■■□□ 2.01
CHMP1A-207ENST00000549328 PTCH1Q13635 1447 aa27.58■■■□□ 2.01
CHMP1A-207ENST00000549328 PRAG1Q86YV5 1406 aa27.58■■■□□ 2.01
CHMP1A-207ENST00000549328 ADGRF5Q8IZF2 1346 aa27.58■■■□□ 2.01
CHMP1A-207ENST00000549328 ADGRL3Q9HAR2 1447 aa27.58■■■□□ 2
CHMP1A-207ENST00000549328 PHLPP1O60346 1717 aa27.57■■■□□ 2
CHMP1A-207ENST00000549328 BRINP3Q76B58 766 aa27.54■■■□□ 2
CHMP1A-207ENST00000549328 JCADQ9P266 1359 aa27.54■■■□□ 2
CHMP1A-207ENST00000549328 MST1RQ04912 1400 aa27.53■■■□□ 2
CHMP1A-207ENST00000549328 ROBO2Q9HCK4 1378 aa27.53■■■□□ 2
CHMP1A-207ENST00000549328 IFT172Q9UG01 1749 aa27.53■■■□□ 2
CHMP1A-207ENST00000549328 AHDC1Q5TGY3 1603 aaPredicted RBP27.52■■■□□ 2
CHMP1A-207ENST00000549328 COL16A1Q07092 1604 aaPredicted RBP27.51■■□□□ 1.99
CHMP1A-207ENST00000549328 NALCNQ8IZF0 1738 aa27.49■■□□□ 1.99
CHMP1A-207ENST00000549328 PIK3C2GO75747 1445 aa27.48■■□□□ 1.99
CHMP1A-207ENST00000549328 RGS17Q9UGC6 210 aaPredicted RBP27.45■■□□□ 1.98
CHMP1A-207ENST00000549328 ASXL1Q8IXJ9 1541 aa27.45■■□□□ 1.98
CHMP1A-207ENST00000549328 LRPPRCP42704 1394 aaKnown RBP27.44■■□□□ 1.98
CHMP1A-207ENST00000549328 TECPR2O15040 1411 aa27.43■■□□□ 1.98
CHMP1A-207ENST00000549328 ABCC11Q96J66 1382 aa27.43■■□□□ 1.98
CHMP1A-207ENST00000549328 SPATA31A6Q5VVP1 1343 aa27.42■■□□□ 1.98
CHMP1A-207ENST00000549328 C14orf93Q9H972 538 aaKnown RBP27.42■■□□□ 1.98
CHMP1A-207ENST00000549328 MYOM2P54296 1465 aa27.41■■□□□ 1.98
CHMP1A-207ENST00000549328 C1orf167Q5SNV9 1468 aa27.41■■□□□ 1.98
CHMP1A-207ENST00000549328 NRXN1Q9ULB1 1477 aa27.41■■□□□ 1.98
CHMP1A-207ENST00000549328 TMEM132EQ6IEE7 984 aa27.4■■□□□ 1.98
CHMP1A-207ENST00000549328 STK26Q9P289 416 aa27.4■■□□□ 1.98
CHMP1A-207ENST00000549328 NHSL1Q5SYE7 1610 aa27.38■■□□□ 1.97
CHMP1A-207ENST00000549328 LRRC59Q96AG4 307 aaKnown RBP27.37■■□□□ 1.97
CHMP1A-207ENST00000549328 SHPRHQ149N8 1683 aa27.36■■□□□ 1.97
CHMP1A-207ENST00000549328 YTHDC2Q9H6S0 1430 aaKnown RBP27.36■■□□□ 1.97
CHMP1A-207ENST00000549328 SIRT1Q96EB6 747 aa27.36■■□□□ 1.97
CHMP1A-207ENST00000549328 WAPLQ7Z5K2 1190 aa27.35■■□□□ 1.97
CHMP1A-207ENST00000549328 CFAP70Q5T0N1 1121 aa27.34■■□□□ 1.97
CHMP1A-207ENST00000549328 STAC3Q96MF2 364 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms