RNA–Protein interactions for RNA: ENST00000548434.1

RAPGEF3-217, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 695 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-217ENST00000548434 NWD1Q149M9 1564 aa24.61■■□□□ 1.53
RAPGEF3-217ENST00000548434 NUP155O75694 1391 aa24.6■■□□□ 1.53
RAPGEF3-217ENST00000548434 CHD2O14647 1828 aaKnown RBP24.59■■□□□ 1.53
RAPGEF3-217ENST00000548434 RIMS2Q9UQ26 1411 aa24.59■■□□□ 1.53
RAPGEF3-217ENST00000548434 PLEKHG1Q9ULL1 1385 aa24.58■■□□□ 1.53
RAPGEF3-217ENST00000548434 ITGAEP38570 1179 aa24.58■■□□□ 1.53
RAPGEF3-217ENST00000548434 TMEM94Q12767 1356 aa24.54■■□□□ 1.52
RAPGEF3-217ENST00000548434 NAIPQ13075 1403 aa24.54■■□□□ 1.52
RAPGEF3-217ENST00000548434 SCAF1Q9H7N4 1312 aaKnown RBP24.54■■□□□ 1.52
RAPGEF3-217ENST00000548434 ADAMTS13Q76LX8 1427 aa24.52■■□□□ 1.52
RAPGEF3-217ENST00000548434 NKTRP30414 1462 aaKnown RBP24.52■■□□□ 1.52
RAPGEF3-217ENST00000548434 MED1Q15648 1581 aaPredicted RBP24.51■■□□□ 1.51
RAPGEF3-217ENST00000548434 TBX22Q9Y458 520 aa24.51■■□□□ 1.51
RAPGEF3-217ENST00000548434 SPHKAPQ2M3C7 1700 aa24.5■■□□□ 1.51
RAPGEF3-217ENST00000548434 FAM135BQ49AJ0 1406 aa24.49■■□□□ 1.51
RAPGEF3-217ENST00000548434 SOCS7O14512 581 aa24.47■■□□□ 1.51
RAPGEF3-217ENST00000548434 RBM33Q96EV2 1170 aaKnown RBP24.47■■□□□ 1.51
RAPGEF3-217ENST00000548434 HDGFP51858 240 aaKnown RBP24.46■■□□□ 1.51
RAPGEF3-217ENST00000548434 PROSER2Q86WR7 435 aaPredicted RBP24.46■■□□□ 1.51
RAPGEF3-217ENST00000548434 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.46■■□□□ 1.51
RAPGEF3-217ENST00000548434 NRXN3Q9Y4C0 1643 aa24.44■■□□□ 1.5
RAPGEF3-217ENST00000548434 DIP2AQ14689 1571 aa24.42■■□□□ 1.5
RAPGEF3-217ENST00000548434 NUTM2DQ5VT03 806 aaPredicted RBP24.42■■□□□ 1.5
RAPGEF3-217ENST00000548434 HFM1A2PYH4 1435 aa24.42■■□□□ 1.5
RAPGEF3-217ENST00000548434 CHGAP10645 457 aaKnown RBP24.41■■□□□ 1.5
RAPGEF3-217ENST00000548434 SENP3Q9H4L4 574 aaPredicted RBP24.41■■□□□ 1.5
RAPGEF3-217ENST00000548434 PIK3R4Q99570 1358 aa24.41■■□□□ 1.5
RAPGEF3-217ENST00000548434 CLTCL1P53675 1640 aa24.4■■□□□ 1.5
RAPGEF3-217ENST00000548434 PTPRUQ92729 1446 aa24.4■■□□□ 1.5
RAPGEF3-217ENST00000548434 NCOA3Q9Y6Q9 1424 aa24.39■■□□□ 1.5
RAPGEF3-217ENST00000548434 ROBO1Q9Y6N7 1651 aa24.39■■□□□ 1.49
RAPGEF3-217ENST00000548434 SETBP1Q9Y6X0 1596 aa24.38■■□□□ 1.49
RAPGEF3-217ENST00000548434 PPP1R15AO75807 674 aaPredicted RBP24.38■■□□□ 1.49
RAPGEF3-217ENST00000548434 TRPM2O94759 1503 aa24.38■■□□□ 1.49
RAPGEF3-217ENST00000548434 BCANQ96GW7 911 aa24.36■■□□□ 1.49
RAPGEF3-217ENST00000548434 NEXMIFQ5QGS0 1516 aa24.35■■□□□ 1.49
RAPGEF3-217ENST00000548434 XRN1Q8IZH2 1706 aaKnown RBP24.32■■□□□ 1.48
RAPGEF3-217ENST00000548434 MSH6P52701 1360 aa24.32■■□□□ 1.48
RAPGEF3-217ENST00000548434 SLAIN2Q9P270 581 aa24.32■■□□□ 1.48
RAPGEF3-217ENST00000548434 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.32■■□□□ 1.48
RAPGEF3-217ENST00000548434 KIF1BO60333 1816 aa24.31■■□□□ 1.48
RAPGEF3-217ENST00000548434 RGS17Q9UGC6 210 aaPredicted RBP24.3■■□□□ 1.48
RAPGEF3-217ENST00000548434 AMOTL2Q9Y2J4 779 aa24.28■■□□□ 1.48
RAPGEF3-217ENST00000548434 METP08581 1390 aa24.28■■□□□ 1.48
RAPGEF3-217ENST00000548434 SETD1AO15047 1707 aaKnown RBP24.26■■□□□ 1.47
RAPGEF3-217ENST00000548434 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
RAPGEF3-217ENST00000548434 PHLPP1O60346 1717 aa24.22■■□□□ 1.47
RAPGEF3-217ENST00000548434 COL16A1Q07092 1604 aaPredicted RBP24.22■■□□□ 1.47
RAPGEF3-217ENST00000548434 ZNF326Q5BKZ1 582 aaKnown RBP24.21■■□□□ 1.47
RAPGEF3-217ENST00000548434 TRIM52Q96A61 297 aa24.2■■□□□ 1.46
RAPGEF3-217ENST00000548434 SLC4A1APQ9BWU0 796 aaKnown RBP24.2■■□□□ 1.46
RAPGEF3-217ENST00000548434 PPLO60437 1756 aa24.19■■□□□ 1.46
RAPGEF3-217ENST00000548434 CADPS2Q86UW7 1296 aa24.18■■□□□ 1.46
RAPGEF3-217ENST00000548434 DCCP43146 1447 aa24.18■■□□□ 1.46
RAPGEF3-217ENST00000548434 AHDC1Q5TGY3 1603 aaPredicted RBP24.17■■□□□ 1.46
RAPGEF3-217ENST00000548434 PRAG1Q86YV5 1406 aa24.16■■□□□ 1.46
RAPGEF3-217ENST00000548434 RPGRIP1LQ68CZ1 1315 aa24.15■■□□□ 1.46
RAPGEF3-217ENST00000548434 FOXD1Q16676 465 aa24.15■■□□□ 1.46
RAPGEF3-217ENST00000548434 PHF23Q9BUL5 403 aaPredicted RBP24.13■■□□□ 1.45
RAPGEF3-217ENST00000548434 MST1RQ04912 1400 aa24.12■■□□□ 1.45
RAPGEF3-217ENST00000548434 SPATA31E1Q6ZUB1 1445 aa24.12■■□□□ 1.45
RAPGEF3-217ENST00000548434 VGFO15240 615 aaPredicted RBP24.12■■□□□ 1.45
RAPGEF3-217ENST00000548434 BRINP3Q76B58 766 aa24.12■■□□□ 1.45
RAPGEF3-217ENST00000548434 NALCNQ8IZF0 1738 aa24.12■■□□□ 1.45
RAPGEF3-217ENST00000548434 ATF3P18847 181 aa24.11■■□□□ 1.45
RAPGEF3-217ENST00000548434 MPHOSPH9Q99550 1183 aa24.11■■□□□ 1.45
RAPGEF3-217ENST00000548434 JCADQ9P266 1359 aa24.11■■□□□ 1.45
RAPGEF3-217ENST00000548434 ADGRL3Q9HAR2 1447 aa24.1■■□□□ 1.45
RAPGEF3-217ENST00000548434 C14orf37Q86TY3 774 aa24.09■■□□□ 1.45
RAPGEF3-217ENST00000548434 IFT172Q9UG01 1749 aa24.09■■□□□ 1.45
RAPGEF3-217ENST00000548434 POTEAQ6S8J7 498 aa24.08■■□□□ 1.45
RAPGEF3-217ENST00000548434 PTCH1Q13635 1447 aa24.08■■□□□ 1.44
RAPGEF3-217ENST00000548434 ROBO2Q9HCK4 1378 aa24.07■■□□□ 1.44
RAPGEF3-217ENST00000548434 SHPRHQ149N8 1683 aa24.07■■□□□ 1.44
RAPGEF3-217ENST00000548434 NHSL1Q5SYE7 1610 aa24.06■■□□□ 1.44
RAPGEF3-217ENST00000548434 ASXL1Q8IXJ9 1541 aa24.06■■□□□ 1.44
RAPGEF3-217ENST00000548434 LRP6O75581 1613 aa24.06■■□□□ 1.44
RAPGEF3-217ENST00000548434 ADGRF5Q8IZF2 1346 aa24.04■■□□□ 1.44
RAPGEF3-217ENST00000548434 LAMC1P11047 1609 aa24.02■■□□□ 1.44
RAPGEF3-217ENST00000548434 SETD5Q9C0A6 1442 aa24.01■■□□□ 1.43
RAPGEF3-217ENST00000548434 CCDC144AA2RUR9 1427 aa24.01■■□□□ 1.43
RAPGEF3-217ENST00000548434 SPATA31A6Q5VVP1 1343 aa24■■□□□ 1.43
RAPGEF3-217ENST00000548434 C1orf167Q5SNV9 1468 aa23.99■■□□□ 1.43
RAPGEF3-217ENST00000548434 TECPR2O15040 1411 aa23.96■■□□□ 1.43
RAPGEF3-217ENST00000548434 ANKRD30BQ9BXX2 1392 aa23.96■■□□□ 1.43
RAPGEF3-217ENST00000548434 ACIN1Q9UKV3 1341 aaKnown RBP23.95■■□□□ 1.42
RAPGEF3-217ENST00000548434 PIK3C2GO75747 1445 aa23.94■■□□□ 1.42
RAPGEF3-217ENST00000548434 RGL3Q3MIN7 710 aa23.94■■□□□ 1.42
RAPGEF3-217ENST00000548434 DDX17Q92841 729 aaKnown RBP23.94■■□□□ 1.42
RAPGEF3-217ENST00000548434 RAB3GAP2Q9H2M9 1393 aa23.93■■□□□ 1.42
RAPGEF3-217ENST00000548434 NRXN1Q9ULB1 1477 aa23.93■■□□□ 1.42
RAPGEF3-217ENST00000548434 ABCC11Q96J66 1382 aa23.91■■□□□ 1.42
RAPGEF3-217ENST00000548434 KNDC1Q76NI1 1749 aa23.9■■□□□ 1.42
RAPGEF3-217ENST00000548434 LRPPRCP42704 1394 aaKnown RBP23.9■■□□□ 1.42
RAPGEF3-217ENST00000548434 ORAI2Q96SN7 254 aa23.89■■□□□ 1.41
RAPGEF3-217ENST00000548434 SOS2Q07890 1332 aaPredicted RBP23.88■■□□□ 1.41
RAPGEF3-217ENST00000548434 CDC42BPGQ6DT37 1551 aa23.88■■□□□ 1.41
RAPGEF3-217ENST00000548434 PNPLA6Q8IY17 1366 aa23.88■■□□□ 1.41
RAPGEF3-217ENST00000548434 LRRC59Q96AG4 307 aaKnown RBP23.87■■□□□ 1.41
RAPGEF3-217ENST00000548434 TMEM132EQ6IEE7 984 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms