RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 PPP1R15AO75807 674 aaPredicted RBP20.47■□□□□ 0.87
PRPF40B-207ENST00000548399 HRCP23327 699 aa20.47■□□□□ 0.87
PRPF40B-207ENST00000548399 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.46■□□□□ 0.87
PRPF40B-207ENST00000548399 ZNF326Q5BKZ1 582 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-207ENST00000548399 MYO5BQ9ULV0 1848 aa20.43■□□□□ 0.86
PRPF40B-207ENST00000548399 BCANQ96GW7 911 aa20.43■□□□□ 0.86
PRPF40B-207ENST00000548399 PLEKHG1Q9ULL1 1385 aa20.42■□□□□ 0.86
PRPF40B-207ENST00000548399 CCDC144AA2RUR9 1427 aa20.42■□□□□ 0.86
PRPF40B-207ENST00000548399 CPS1P31327 1500 aa20.4■□□□□ 0.86
PRPF40B-207ENST00000548399 NUTM2DQ5VT03 806 aaPredicted RBP20.4■□□□□ 0.86
PRPF40B-207ENST00000548399 SLC26A8Q96RN1 970 aa20.39■□□□□ 0.85
PRPF40B-207ENST00000548399 FBXO41Q8TF61 875 aa20.38■□□□□ 0.85
PRPF40B-207ENST00000548399 IQSEC2Q5JU85 1478 aa20.37■□□□□ 0.85
PRPF40B-207ENST00000548399 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
PRPF40B-207ENST00000548399 KIF1BO60333 1816 aa20.37■□□□□ 0.85
PRPF40B-207ENST00000548399 ILDR1Q86SU0 546 aaPredicted RBP20.35■□□□□ 0.85
PRPF40B-207ENST00000548399 TRIM26Q12899 539 aaPredicted RBP20.34■□□□□ 0.85
PRPF40B-207ENST00000548399 NEXMIFQ5QGS0 1516 aa20.33■□□□□ 0.85
PRPF40B-207ENST00000548399 RPGRIP1LQ68CZ1 1315 aa20.33■□□□□ 0.85
PRPF40B-207ENST00000548399 TBX22Q9Y458 520 aa20.32■□□□□ 0.84
PRPF40B-207ENST00000548399 ADAMTS13Q76LX8 1427 aa20.31■□□□□ 0.84
PRPF40B-207ENST00000548399 DIP2AQ14689 1571 aa20.3■□□□□ 0.84
PRPF40B-207ENST00000548399 SPATA31E1Q6ZUB1 1445 aa20.3■□□□□ 0.84
PRPF40B-207ENST00000548399 KCNA6P17658 529 aa20.3■□□□□ 0.84
PRPF40B-207ENST00000548399 VGFO15240 615 aaPredicted RBP20.29■□□□□ 0.84
PRPF40B-207ENST00000548399 ANKRD30BQ9BXX2 1392 aa20.29■□□□□ 0.84
PRPF40B-207ENST00000548399 SETBP1Q9Y6X0 1596 aa20.29■□□□□ 0.84
PRPF40B-207ENST00000548399 LRRC7Q96NW7 1537 aa20.28■□□□□ 0.84
PRPF40B-207ENST00000548399 RGL3Q3MIN7 710 aa20.28■□□□□ 0.84
PRPF40B-207ENST00000548399 STRCP1A6NGW2 1772 aa20.28■□□□□ 0.84
PRPF40B-207ENST00000548399 PIK3R4Q99570 1358 aa20.26■□□□□ 0.83
PRPF40B-207ENST00000548399 NWD1Q149M9 1564 aa20.25■□□□□ 0.83
PRPF40B-207ENST00000548399 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
PRPF40B-207ENST00000548399 UBAP1LF5GYI3 381 aa20.24■□□□□ 0.83
PRPF40B-207ENST00000548399 NRXN3Q9Y4C0 1643 aa20.24■□□□□ 0.83
PRPF40B-207ENST00000548399 PPLO60437 1756 aa20.22■□□□□ 0.83
PRPF40B-207ENST00000548399 PROSER2Q86WR7 435 aaPredicted RBP20.22■□□□□ 0.83
PRPF40B-207ENST00000548399 TMEM94Q12767 1356 aa20.21■□□□□ 0.83
PRPF40B-207ENST00000548399 TOM1O60784 492 aa20.19■□□□□ 0.82
PRPF40B-207ENST00000548399 METP08581 1390 aa20.19■□□□□ 0.82
PRPF40B-207ENST00000548399 ADGRF5Q8IZF2 1346 aa20.18■□□□□ 0.82
PRPF40B-207ENST00000548399 CHD2O14647 1828 aaKnown RBP20.18■□□□□ 0.82
PRPF40B-207ENST00000548399 AMOTL2Q9Y2J4 779 aa20.17■□□□□ 0.82
PRPF40B-207ENST00000548399 PTPRUQ92729 1446 aa20.17■□□□□ 0.82
PRPF40B-207ENST00000548399 IFT172Q9UG01 1749 aa20.16■□□□□ 0.82
PRPF40B-207ENST00000548399 RBM33Q96EV2 1170 aaKnown RBP20.16■□□□□ 0.82
PRPF40B-207ENST00000548399 ALKQ9UM73 1620 aa20.16■□□□□ 0.82
PRPF40B-207ENST00000548399 MYOM2P54296 1465 aa20.14■□□□□ 0.81
PRPF40B-207ENST00000548399 PIK3C2GO75747 1445 aa20.13■□□□□ 0.81
PRPF40B-207ENST00000548399 SCAF1Q9H7N4 1312 aaKnown RBP20.12■□□□□ 0.81
PRPF40B-207ENST00000548399 XRN1Q8IZH2 1706 aaKnown RBP20.12■□□□□ 0.81
PRPF40B-207ENST00000548399 NCOA3Q9Y6Q9 1424 aa20.11■□□□□ 0.81
PRPF40B-207ENST00000548399 MSH6P52701 1360 aa20.11■□□□□ 0.81
PRPF40B-207ENST00000548399 PIP4K2BP78356 416 aa20.11■□□□□ 0.81
PRPF40B-207ENST00000548399 C14orf37Q86TY3 774 aa20.11■□□□□ 0.81
PRPF40B-207ENST00000548399 XIRP1Q702N8 1843 aaKnown RBP20.11■□□□□ 0.81
PRPF40B-207ENST00000548399 NRXN1Q9ULB1 1477 aa20.1■□□□□ 0.81
PRPF40B-207ENST00000548399 SETD1AO15047 1707 aaKnown RBP20.1■□□□□ 0.81
PRPF40B-207ENST00000548399 DHX57Q6P158 1386 aaKnown RBP20.09■□□□□ 0.81
PRPF40B-207ENST00000548399 DCAF11Q8TEB1 546 aa20.09■□□□□ 0.81
PRPF40B-207ENST00000548399 STAC3Q96MF2 364 aa20.08■□□□□ 0.81
PRPF40B-207ENST00000548399 KDM2AQ9Y2K7 1162 aa20.07■□□□□ 0.8
PRPF40B-207ENST00000548399 PTCH1Q13635 1447 aa20.06■□□□□ 0.8
PRPF40B-207ENST00000548399 PRAG1Q86YV5 1406 aa20.05■□□□□ 0.8
PRPF40B-207ENST00000548399 C19orf44Q9H6X5 657 aa20.05■□□□□ 0.8
PRPF40B-207ENST00000548399 C14orf93Q9H972 538 aaKnown RBP20.05■□□□□ 0.8
PRPF40B-207ENST00000548399 LAMC1P11047 1609 aa20.03■□□□□ 0.8
PRPF40B-207ENST00000548399 CFAP70Q5T0N1 1121 aa20.03■□□□□ 0.8
PRPF40B-207ENST00000548399 TMEM132EQ6IEE7 984 aa20.03■□□□□ 0.8
PRPF40B-207ENST00000548399 ROBO2Q9HCK4 1378 aa20.03■□□□□ 0.8
PRPF40B-207ENST00000548399 ASXL1Q8IXJ9 1541 aa20.02■□□□□ 0.8
PRPF40B-207ENST00000548399 ATF3P18847 181 aa20.02■□□□□ 0.8
PRPF40B-207ENST00000548399 PCGF6Q9BYE7 350 aa20.02■□□□□ 0.8
PRPF40B-207ENST00000548399 LRPPRCP42704 1394 aaKnown RBP20.02■□□□□ 0.8
PRPF40B-207ENST00000548399 CADPS2Q86UW7 1296 aa20.01■□□□□ 0.79
PRPF40B-207ENST00000548399 SIN3AQ96ST3 1273 aa20.01■□□□□ 0.79
PRPF40B-207ENST00000548399 STK26Q9P289 416 aa20.01■□□□□ 0.79
PRPF40B-207ENST00000548399 TECPR2O15040 1411 aa20■□□□□ 0.79
PRPF40B-207ENST00000548399 YTHDC2Q9H6S0 1430 aaKnown RBP20■□□□□ 0.79
PRPF40B-207ENST00000548399 ADGRL3Q9HAR2 1447 aa20■□□□□ 0.79
PRPF40B-207ENST00000548399 ABCC11Q96J66 1382 aa19.99■□□□□ 0.79
PRPF40B-207ENST00000548399 NEUROD1Q13562 356 aa19.99■□□□□ 0.79
PRPF40B-207ENST00000548399 SLAIN2Q9P270 581 aa19.99■□□□□ 0.79
PRPF40B-207ENST00000548399 DCCP43146 1447 aa19.99■□□□□ 0.79
PRPF40B-207ENST00000548399 FAM135BQ49AJ0 1406 aa19.98■□□□□ 0.79
PRPF40B-207ENST00000548399 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.97■□□□□ 0.79
PRPF40B-207ENST00000548399 HSPA1LP34931 641 aa19.97■□□□□ 0.79
PRPF40B-207ENST00000548399 L3MBTL2Q969R5 705 aa19.95■□□□□ 0.78
PRPF40B-207ENST00000548399 ADGRB1O14514 1584 aa19.94■□□□□ 0.78
PRPF40B-207ENST00000548399 KNDC1Q76NI1 1749 aa19.93■□□□□ 0.78
PRPF40B-207ENST00000548399 NALCNQ8IZF0 1738 aa19.93■□□□□ 0.78
PRPF40B-207ENST00000548399 WAPLQ7Z5K2 1190 aa19.92■□□□□ 0.78
PRPF40B-207ENST00000548399 SIRT1Q96EB6 747 aa19.92■□□□□ 0.78
PRPF40B-207ENST00000548399 ROBO1Q9Y6N7 1651 aa19.91■□□□□ 0.78
PRPF40B-207ENST00000548399 PLEKHH1Q9ULM0 1364 aa19.9■□□□□ 0.78
PRPF40B-207ENST00000548399 MST1RQ04912 1400 aa19.9■□□□□ 0.78
PRPF40B-207ENST00000548399 DLC1Q96QB1 1528 aa19.89■□□□□ 0.77
PRPF40B-207ENST00000548399 PRAM1Q96QH2 718 aa19.88■□□□□ 0.77
PRPF40B-207ENST00000548399 TRAK1Q9UPV9 953 aa19.88■□□□□ 0.77
PRPF40B-207ENST00000548399 TONSLQ96HA7 1378 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms