RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 SLC4A1APQ9BWU0 796 aaKnown RBP17.76■□□□□ 0.43
YBX3-217ENST00000546164 SPHKAPQ2M3C7 1700 aa17.75■□□□□ 0.43
YBX3-217ENST00000546164 TRPM2O94759 1503 aa17.75■□□□□ 0.43
YBX3-217ENST00000546164 RIMS2Q9UQ26 1411 aa17.73■□□□□ 0.43
YBX3-217ENST00000546164 CPS1P31327 1500 aa17.73■□□□□ 0.43
YBX3-217ENST00000546164 HDGFP51858 240 aaKnown RBP17.73■□□□□ 0.43
YBX3-217ENST00000546164 CHGAP10645 457 aaKnown RBP17.71■□□□□ 0.43
YBX3-217ENST00000546164 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.71■□□□□ 0.43
YBX3-217ENST00000546164 PLEKHG1Q9ULL1 1385 aa17.7■□□□□ 0.42
YBX3-217ENST00000546164 MYO5BQ9ULV0 1848 aa17.7■□□□□ 0.42
YBX3-217ENST00000546164 RAB3GAP2Q9H2M9 1393 aa17.69■□□□□ 0.42
YBX3-217ENST00000546164 MPHOSPH9Q99550 1183 aa17.69■□□□□ 0.42
YBX3-217ENST00000546164 CLTCL1P53675 1640 aa17.69■□□□□ 0.42
YBX3-217ENST00000546164 HRCP23327 699 aa17.67■□□□□ 0.42
YBX3-217ENST00000546164 PPP1R15AO75807 674 aaPredicted RBP17.66■□□□□ 0.42
YBX3-217ENST00000546164 SLC26A8Q96RN1 970 aa17.64■□□□□ 0.41
YBX3-217ENST00000546164 STRCP1A6NGW2 1772 aa17.63■□□□□ 0.41
YBX3-217ENST00000546164 LRRC7Q96NW7 1537 aa17.62■□□□□ 0.41
YBX3-217ENST00000546164 KCNA6P17658 529 aa17.62■□□□□ 0.41
YBX3-217ENST00000546164 TBX22Q9Y458 520 aa17.62■□□□□ 0.41
YBX3-217ENST00000546164 ADAMTS13Q76LX8 1427 aa17.62■□□□□ 0.41
YBX3-217ENST00000546164 ZNF326Q5BKZ1 582 aaKnown RBP17.61■□□□□ 0.41
YBX3-217ENST00000546164 NUTM2DQ5VT03 806 aaPredicted RBP17.6■□□□□ 0.41
YBX3-217ENST00000546164 BCANQ96GW7 911 aa17.6■□□□□ 0.41
YBX3-217ENST00000546164 CCDC144AA2RUR9 1427 aa17.6■□□□□ 0.41
YBX3-217ENST00000546164 NEXMIFQ5QGS0 1516 aa17.6■□□□□ 0.41
YBX3-217ENST00000546164 DIP2AQ14689 1571 aa17.6■□□□□ 0.41
YBX3-217ENST00000546164 KIF1BO60333 1816 aa17.59■□□□□ 0.41
YBX3-217ENST00000546164 NWD1Q149M9 1564 aa17.59■□□□□ 0.41
YBX3-217ENST00000546164 PIK3R4Q99570 1358 aa17.59■□□□□ 0.41
YBX3-217ENST00000546164 RPGRIP1LQ68CZ1 1315 aa17.58■□□□□ 0.4
YBX3-217ENST00000546164 SETBP1Q9Y6X0 1596 aa17.57■□□□□ 0.4
YBX3-217ENST00000546164 NKTRP30414 1462 aaKnown RBP17.57■□□□□ 0.4
YBX3-217ENST00000546164 UBAP1LF5GYI3 381 aa17.57■□□□□ 0.4
YBX3-217ENST00000546164 SPATA31E1Q6ZUB1 1445 aa17.56■□□□□ 0.4
YBX3-217ENST00000546164 NRXN3Q9Y4C0 1643 aa17.54■□□□□ 0.4
YBX3-217ENST00000546164 VGFO15240 615 aaPredicted RBP17.54■□□□□ 0.4
YBX3-217ENST00000546164 TMEM94Q12767 1356 aa17.53■□□□□ 0.4
YBX3-217ENST00000546164 TOM1O60784 492 aa17.53■□□□□ 0.4
YBX3-217ENST00000546164 CHD2O14647 1828 aaKnown RBP17.52■□□□□ 0.4
YBX3-217ENST00000546164 ANKRD30BQ9BXX2 1392 aa17.52■□□□□ 0.39
YBX3-217ENST00000546164 ALKQ9UM73 1620 aa17.5■□□□□ 0.39
YBX3-217ENST00000546164 PROSER2Q86WR7 435 aaPredicted RBP17.5■□□□□ 0.39
YBX3-217ENST00000546164 PTPRUQ92729 1446 aa17.49■□□□□ 0.39
YBX3-217ENST00000546164 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
YBX3-217ENST00000546164 XIRP1Q702N8 1843 aaKnown RBP17.49■□□□□ 0.39
YBX3-217ENST00000546164 PPLO60437 1756 aa17.48■□□□□ 0.39
YBX3-217ENST00000546164 METP08581 1390 aa17.48■□□□□ 0.39
YBX3-217ENST00000546164 RGL3Q3MIN7 710 aa17.46■□□□□ 0.39
YBX3-217ENST00000546164 AMOTL2Q9Y2J4 779 aa17.46■□□□□ 0.39
YBX3-217ENST00000546164 XRN1Q8IZH2 1706 aaKnown RBP17.45■□□□□ 0.38
YBX3-217ENST00000546164 ADGRF5Q8IZF2 1346 aa17.44■□□□□ 0.38
YBX3-217ENST00000546164 IFT172Q9UG01 1749 aa17.44■□□□□ 0.38
YBX3-217ENST00000546164 MSH6P52701 1360 aa17.43■□□□□ 0.38
YBX3-217ENST00000546164 PIP4K2BP78356 416 aa17.43■□□□□ 0.38
YBX3-217ENST00000546164 RBM33Q96EV2 1170 aaKnown RBP17.43■□□□□ 0.38
YBX3-217ENST00000546164 PRAG1Q86YV5 1406 aa17.43■□□□□ 0.38
YBX3-217ENST00000546164 SETD1AO15047 1707 aaKnown RBP17.42■□□□□ 0.38
YBX3-217ENST00000546164 PIK3C2GO75747 1445 aa17.41■□□□□ 0.38
YBX3-217ENST00000546164 MYOM2P54296 1465 aa17.41■□□□□ 0.38
YBX3-217ENST00000546164 NRXN1Q9ULB1 1477 aa17.4■□□□□ 0.38
YBX3-217ENST00000546164 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
YBX3-217ENST00000546164 PTCH1Q13635 1447 aa17.39■□□□□ 0.38
YBX3-217ENST00000546164 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
YBX3-217ENST00000546164 C19orf44Q9H6X5 657 aa17.39■□□□□ 0.37
YBX3-217ENST00000546164 FAM135BQ49AJ0 1406 aa17.38■□□□□ 0.37
YBX3-217ENST00000546164 HSPA1LP34931 641 aa17.37■□□□□ 0.37
YBX3-217ENST00000546164 STAC3Q96MF2 364 aa17.37■□□□□ 0.37
YBX3-217ENST00000546164 DCCP43146 1447 aa17.37■□□□□ 0.37
YBX3-217ENST00000546164 C14orf37Q86TY3 774 aa17.35■□□□□ 0.37
YBX3-217ENST00000546164 CADPS2Q86UW7 1296 aa17.35■□□□□ 0.37
YBX3-217ENST00000546164 C14orf93Q9H972 538 aaKnown RBP17.35■□□□□ 0.37
YBX3-217ENST00000546164 TECPR2O15040 1411 aa17.34■□□□□ 0.37
YBX3-217ENST00000546164 ROBO2Q9HCK4 1378 aa17.34■□□□□ 0.37
YBX3-217ENST00000546164 SLAIN2Q9P270 581 aa17.34■□□□□ 0.37
YBX3-217ENST00000546164 ASXL1Q8IXJ9 1541 aa17.33■□□□□ 0.37
YBX3-217ENST00000546164 ADGRL3Q9HAR2 1447 aa17.33■□□□□ 0.36
YBX3-217ENST00000546164 LRPPRCP42704 1394 aaKnown RBP17.33■□□□□ 0.36
YBX3-217ENST00000546164 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.36
YBX3-217ENST00000546164 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.33■□□□□ 0.36
YBX3-217ENST00000546164 ABCC11Q96J66 1382 aa17.32■□□□□ 0.36
YBX3-217ENST00000546164 ATF3P18847 181 aa17.32■□□□□ 0.36
YBX3-217ENST00000546164 LAMC1P11047 1609 aa17.3■□□□□ 0.36
YBX3-217ENST00000546164 CACNB1Q02641 598 aaPredicted RBP17.3■□□□□ 0.36
YBX3-217ENST00000546164 CFAP70Q5T0N1 1121 aa17.29■□□□□ 0.36
YBX3-217ENST00000546164 DCAF11Q8TEB1 546 aa17.29■□□□□ 0.36
YBX3-217ENST00000546164 ROBO1Q9Y6N7 1651 aa17.29■□□□□ 0.36
YBX3-217ENST00000546164 YTHDC2Q9H6S0 1430 aaKnown RBP17.29■□□□□ 0.36
YBX3-217ENST00000546164 TMEM132EQ6IEE7 984 aa17.28■□□□□ 0.36
YBX3-217ENST00000546164 SIRT1Q96EB6 747 aa17.27■□□□□ 0.36
YBX3-217ENST00000546164 KNDC1Q76NI1 1749 aa17.27■□□□□ 0.35
YBX3-217ENST00000546164 MST1RQ04912 1400 aa17.26■□□□□ 0.35
YBX3-217ENST00000546164 NALCNQ8IZF0 1738 aa17.26■□□□□ 0.35
YBX3-217ENST00000546164 ADGRB1O14514 1584 aa17.25■□□□□ 0.35
YBX3-217ENST00000546164 STK26Q9P289 416 aa17.25■□□□□ 0.35
YBX3-217ENST00000546164 KDM2AQ9Y2K7 1162 aa17.25■□□□□ 0.35
YBX3-217ENST00000546164 BRINP3Q76B58 766 aa17.22■□□□□ 0.35
YBX3-217ENST00000546164 DLC1Q96QB1 1528 aa17.21■□□□□ 0.35
YBX3-217ENST00000546164 CDC42BPGQ6DT37 1551 aa17.21■□□□□ 0.35
YBX3-217ENST00000546164 PLEKHH1Q9ULM0 1364 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms