RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 ANKRD30BQ9BXX2 1392 aa9.17□□□□□ -0.94
LTBR-212ENST00000543542 TMEM2Q9UHN6 1383 aa9.17□□□□□ -0.94
LTBR-212ENST00000543542 NEUROD1Q13562 356 aa9.17□□□□□ -0.94
LTBR-212ENST00000543542 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.17□□□□□ -0.94
LTBR-212ENST00000543542 CCER1Q8TC90 406 aaPredicted RBP9.17□□□□□ -0.94
LTBR-212ENST00000543542 SLIT1O75093 1534 aa9.16□□□□□ -0.94
LTBR-212ENST00000543542 SCAF11Q99590 1463 aaKnown RBP9.15□□□□□ -0.94
LTBR-212ENST00000543542 IQGAP1P46940 1657 aa9.15□□□□□ -0.94
LTBR-212ENST00000543542 ARHGAP23Q9P227 1491 aa9.15□□□□□ -0.95
LTBR-212ENST00000543542 NPHP4O75161 1426 aaPredicted RBP9.14□□□□□ -0.95
LTBR-212ENST00000543542 RPGRIP1LQ68CZ1 1315 aa9.14□□□□□ -0.95
LTBR-212ENST00000543542 LTKP29376 864 aa9.14□□□□□ -0.95
LTBR-212ENST00000543542 SIN3AQ96ST3 1273 aa9.14□□□□□ -0.95
LTBR-212ENST00000543542 PPLO60437 1756 aa9.14□□□□□ -0.95
LTBR-212ENST00000543542 VGFO15240 615 aaPredicted RBP9.13□□□□□ -0.95
LTBR-212ENST00000543542 KDM2AQ9Y2K7 1162 aa9.13□□□□□ -0.95
LTBR-212ENST00000543542 NEURL4Q96JN8 1562 aa9.12□□□□□ -0.95
LTBR-212ENST00000543542 NEXMIFQ5QGS0 1516 aa9.12□□□□□ -0.95
LTBR-212ENST00000543542 DCAF11Q8TEB1 546 aa9.12□□□□□ -0.95
LTBR-212ENST00000543542 ZFYVE9O95405 1425 aa9.12□□□□□ -0.95
LTBR-212ENST00000543542 SPATA31E1Q6ZUB1 1445 aa9.12□□□□□ -0.95
LTBR-212ENST00000543542 IFT172Q9UG01 1749 aa9.11□□□□□ -0.95
LTBR-212ENST00000543542 MED14O60244 1454 aa9.11□□□□□ -0.95
LTBR-212ENST00000543542 SLC26A8Q96RN1 970 aa9.11□□□□□ -0.95
LTBR-212ENST00000543542 TONSLQ96HA7 1378 aa9.11□□□□□ -0.95
LTBR-212ENST00000543542 PLEKHG1Q9ULL1 1385 aa9.11□□□□□ -0.95
LTBR-212ENST00000543542 ADGRF5Q8IZF2 1346 aa9.08□□□□□ -0.96
LTBR-212ENST00000543542 DIP2AQ14689 1571 aa9.07□□□□□ -0.96
LTBR-212ENST00000543542 CLSPNQ9HAW4 1339 aa9.07□□□□□ -0.96
LTBR-212ENST00000543542 MYOM2P54296 1465 aa9.07□□□□□ -0.96
LTBR-212ENST00000543542 ZNF335Q9H4Z2 1342 aaPredicted RBP9.06□□□□□ -0.96
LTBR-212ENST00000543542 L3MBTL2Q969R5 705 aa9.06□□□□□ -0.96
LTBR-212ENST00000543542 STAC3Q96MF2 364 aa9.06□□□□□ -0.96
LTBR-212ENST00000543542 TBX22Q9Y458 520 aa9.06□□□□□ -0.96
LTBR-212ENST00000543542 SETBP1Q9Y6X0 1596 aa9.06□□□□□ -0.96
LTBR-212ENST00000543542 LAMC1P11047 1609 aa9.05□□□□□ -0.96
LTBR-212ENST00000543542 ALKQ9UM73 1620 aa9.05□□□□□ -0.96
LTBR-212ENST00000543542 NRXN3Q9Y4C0 1643 aa9.05□□□□□ -0.96
LTBR-212ENST00000543542 ADAMTS13Q76LX8 1427 aa9.05□□□□□ -0.96
LTBR-212ENST00000543542 PIK3C2GO75747 1445 aa9.04□□□□□ -0.96
LTBR-212ENST00000543542 CHD2O14647 1828 aaKnown RBP9.03□□□□□ -0.96
LTBR-212ENST00000543542 KCNA6P17658 529 aa9.03□□□□□ -0.96
LTBR-212ENST00000543542 CFAP70Q5T0N1 1121 aa9.03□□□□□ -0.96
LTBR-212ENST00000543542 C14orf37Q86TY3 774 aa9.03□□□□□ -0.96
LTBR-212ENST00000543542 PROSER2Q86WR7 435 aaPredicted RBP9.03□□□□□ -0.96
LTBR-212ENST00000543542 STK26Q9P289 416 aa9.03□□□□□ -0.96
LTBR-212ENST00000543542 AMOTL2Q9Y2J4 779 aa9.03□□□□□ -0.96
LTBR-212ENST00000543542 METP08581 1390 aa9.02□□□□□ -0.97
LTBR-212ENST00000543542 PIK3R4Q99570 1358 aa9.02□□□□□ -0.97
LTBR-212ENST00000543542 CPS1P31327 1500 aa9.02□□□□□ -0.97
LTBR-212ENST00000543542 TMEM132EQ6IEE7 984 aa9.02□□□□□ -0.97
LTBR-212ENST00000543542 SETD1AO15047 1707 aaKnown RBP9.02□□□□□ -0.97
LTBR-212ENST00000543542 NRXN1Q9ULB1 1477 aa9.02□□□□□ -0.97
LTBR-212ENST00000543542 STRCP1A6NGW2 1772 aa9.01□□□□□ -0.97
LTBR-212ENST00000543542 C14orf93Q9H972 538 aaKnown RBP9.01□□□□□ -0.97
LTBR-212ENST00000543542 NWD1Q149M9 1564 aa9□□□□□ -0.97
LTBR-212ENST00000543542 PRAG1Q86YV5 1406 aa9□□□□□ -0.97
LTBR-212ENST00000543542 CERKQ8TCT0 537 aa9□□□□□ -0.97
LTBR-212ENST00000543542 RBM33Q96EV2 1170 aaKnown RBP9□□□□□ -0.97
LTBR-212ENST00000543542 TIMELESSQ9UNS1 1208 aa9□□□□□ -0.97
LTBR-212ENST00000543542 KIAA1210Q9ULL0 1709 aa9□□□□□ -0.97
LTBR-212ENST00000543542 PTPRUQ92729 1446 aa8.99□□□□□ -0.97
LTBR-212ENST00000543542 LTBP4Q8N2S1 1624 aa8.99□□□□□ -0.97
LTBR-212ENST00000543542 NKTRP30414 1462 aaKnown RBP8.99□□□□□ -0.97
LTBR-212ENST00000543542 ROCK2O75116 1388 aaKnown RBP8.99□□□□□ -0.97
LTBR-212ENST00000543542 TRPM1Q7Z4N2 1603 aa8.98□□□□□ -0.97
LTBR-212ENST00000543542 YTHDC2Q9H6S0 1430 aaKnown RBP8.98□□□□□ -0.97
LTBR-212ENST00000543542 XRN1Q8IZH2 1706 aaKnown RBP8.98□□□□□ -0.97
LTBR-212ENST00000543542 POGKQ9P215 609 aa8.98□□□□□ -0.97
LTBR-212ENST00000543542 TRAK1Q9UPV9 953 aa8.98□□□□□ -0.97
LTBR-212ENST00000543542 LRRC7Q96NW7 1537 aa8.98□□□□□ -0.97
LTBR-212ENST00000543542 LRPPRCP42704 1394 aaKnown RBP8.98□□□□□ -0.97
LTBR-212ENST00000543542 KNDC1Q76NI1 1749 aa8.97□□□□□ -0.97
LTBR-212ENST00000543542 ASXL1Q8IXJ9 1541 aa8.97□□□□□ -0.97
LTBR-212ENST00000543542 NBPF1Q3BBV0 1214 aa8.97□□□□□ -0.97
LTBR-212ENST00000543542 NBPF8Q3BBV2 869 aa8.97□□□□□ -0.97
LTBR-212ENST00000543542 TMEM94Q12767 1356 aa8.97□□□□□ -0.97
LTBR-212ENST00000543542 SAFB2Q14151 953 aaKnown RBP eCLIP8.96□□□□□ -0.98
LTBR-212ENST00000543542 CARD11Q9BXL7 1154 aa8.96□□□□□ -0.98
LTBR-212ENST00000543542 SCAF1Q9H7N4 1312 aaKnown RBP8.96□□□□□ -0.98
LTBR-212ENST00000543542 MSH6P52701 1360 aa8.96□□□□□ -0.98
LTBR-212ENST00000543542 XIRP1Q702N8 1843 aaKnown RBP8.96□□□□□ -0.98
LTBR-212ENST00000543542 ADGRB1O14514 1584 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 UBAP1LF5GYI3 381 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 WAPLQ7Z5K2 1190 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 PRAM1Q96QH2 718 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 ABCC11Q96J66 1382 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 ROBO2Q9HCK4 1378 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 PTCH1Q13635 1447 aa8.95□□□□□ -0.98
LTBR-212ENST00000543542 TOM1O60784 492 aa8.94□□□□□ -0.98
LTBR-212ENST00000543542 ATF3P18847 181 aa8.94□□□□□ -0.98
LTBR-212ENST00000543542 IQSEC2Q5JU85 1478 aa8.94□□□□□ -0.98
LTBR-212ENST00000543542 RALGAPBQ86X10 1494 aa8.94□□□□□ -0.98
LTBR-212ENST00000543542 ARHGEF28Q8N1W1 1705 aaKnown RBP8.94□□□□□ -0.98
LTBR-212ENST00000543542 EIF3AQ14152 1382 aaKnown RBP8.93□□□□□ -0.98
LTBR-212ENST00000543542 TECPR2O15040 1411 aa8.93□□□□□ -0.98
LTBR-212ENST00000543542 NCOA3Q9Y6Q9 1424 aa8.93□□□□□ -0.98
LTBR-212ENST00000543542 DLC1Q96QB1 1528 aa8.93□□□□□ -0.98
LTBR-212ENST00000543542 NALCNQ8IZF0 1738 aa8.93□□□□□ -0.98
LTBR-212ENST00000543542 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms