RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 PLEKHG1Q9ULL1 1385 aa19.84■□□□□ 0.77
TNFRSF1A-215ENST00000543359 SPHKAPQ2M3C7 1700 aa19.83■□□□□ 0.77
TNFRSF1A-215ENST00000543359 KCNA6P17658 529 aa19.83■□□□□ 0.77
TNFRSF1A-215ENST00000543359 CHGAP10645 457 aaKnown RBP19.82■□□□□ 0.76
TNFRSF1A-215ENST00000543359 HDGFP51858 240 aaKnown RBP19.81■□□□□ 0.76
TNFRSF1A-215ENST00000543359 PIP4K2BP78356 416 aa19.8■□□□□ 0.76
TNFRSF1A-215ENST00000543359 NWD1Q149M9 1564 aa19.79■□□□□ 0.76
TNFRSF1A-215ENST00000543359 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.79■□□□□ 0.76
TNFRSF1A-215ENST00000543359 TBX22Q9Y458 520 aa19.79■□□□□ 0.76
TNFRSF1A-215ENST00000543359 ADAMTS13Q76LX8 1427 aa19.78■□□□□ 0.76
TNFRSF1A-215ENST00000543359 HSPA1LP34931 641 aa19.78■□□□□ 0.76
TNFRSF1A-215ENST00000543359 NUTM2DQ5VT03 806 aaPredicted RBP19.78■□□□□ 0.76
TNFRSF1A-215ENST00000543359 SENP3Q9H4L4 574 aaPredicted RBP19.78■□□□□ 0.76
TNFRSF1A-215ENST00000543359 TRPM2O94759 1503 aa19.77■□□□□ 0.76
TNFRSF1A-215ENST00000543359 PPP1R15AO75807 674 aaPredicted RBP19.77■□□□□ 0.76
TNFRSF1A-215ENST00000543359 CHD2O14647 1828 aaKnown RBP19.76■□□□□ 0.75
TNFRSF1A-215ENST00000543359 TMEM94Q12767 1356 aa19.76■□□□□ 0.75
TNFRSF1A-215ENST00000543359 BCANQ96GW7 911 aa19.76■□□□□ 0.75
TNFRSF1A-215ENST00000543359 CLTCL1P53675 1640 aa19.76■□□□□ 0.75
TNFRSF1A-215ENST00000543359 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
TNFRSF1A-215ENST00000543359 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
TNFRSF1A-215ENST00000543359 NKTRP30414 1462 aaKnown RBP19.74■□□□□ 0.75
TNFRSF1A-215ENST00000543359 PROSER2Q86WR7 435 aaPredicted RBP19.73■□□□□ 0.75
TNFRSF1A-215ENST00000543359 RBM33Q96EV2 1170 aaKnown RBP19.72■□□□□ 0.75
TNFRSF1A-215ENST00000543359 SLC4A1APQ9BWU0 796 aaKnown RBP19.72■□□□□ 0.75
TNFRSF1A-215ENST00000543359 NRXN3Q9Y4C0 1643 aa19.71■□□□□ 0.75
TNFRSF1A-215ENST00000543359 DIP2AQ14689 1571 aa19.7■□□□□ 0.74
TNFRSF1A-215ENST00000543359 PIK3R4Q99570 1358 aa19.69■□□□□ 0.74
TNFRSF1A-215ENST00000543359 DISP3Q9P2K9 1392 aa19.69■□□□□ 0.74
TNFRSF1A-215ENST00000543359 NEXMIFQ5QGS0 1516 aa19.68■□□□□ 0.74
TNFRSF1A-215ENST00000543359 SETBP1Q9Y6X0 1596 aa19.68■□□□□ 0.74
TNFRSF1A-215ENST00000543359 ZNF326Q5BKZ1 582 aaKnown RBP19.67■□□□□ 0.74
TNFRSF1A-215ENST00000543359 KIF1BO60333 1816 aa19.67■□□□□ 0.74
TNFRSF1A-215ENST00000543359 PTPRUQ92729 1446 aa19.67■□□□□ 0.74
TNFRSF1A-215ENST00000543359 FOXD1Q16676 465 aa19.66■□□□□ 0.74
TNFRSF1A-215ENST00000543359 FAM135BQ49AJ0 1406 aa19.66■□□□□ 0.74
TNFRSF1A-215ENST00000543359 MPHOSPH9Q99550 1183 aa19.64■□□□□ 0.73
TNFRSF1A-215ENST00000543359 NCOA3Q9Y6Q9 1424 aa19.63■□□□□ 0.73
TNFRSF1A-215ENST00000543359 ILDR2Q71H61 639 aa19.63■□□□□ 0.73
TNFRSF1A-215ENST00000543359 SETD5Q9C0A6 1442 aa19.62■□□□□ 0.73
TNFRSF1A-215ENST00000543359 AMOTL2Q9Y2J4 779 aa19.62■□□□□ 0.73
TNFRSF1A-215ENST00000543359 METP08581 1390 aa19.61■□□□□ 0.73
TNFRSF1A-215ENST00000543359 MSH6P52701 1360 aa19.6■□□□□ 0.73
TNFRSF1A-215ENST00000543359 XRN1Q8IZH2 1706 aaKnown RBP19.59■□□□□ 0.73
TNFRSF1A-215ENST00000543359 RPGRIP1LQ68CZ1 1315 aa19.59■□□□□ 0.73
TNFRSF1A-215ENST00000543359 SLAIN2Q9P270 581 aa19.58■□□□□ 0.72
TNFRSF1A-215ENST00000543359 ROBO1Q9Y6N7 1651 aa19.58■□□□□ 0.72
TNFRSF1A-215ENST00000543359 SPATA31E1Q6ZUB1 1445 aa19.57■□□□□ 0.72
TNFRSF1A-215ENST00000543359 MED1Q15648 1581 aaPredicted RBP19.57■□□□□ 0.72
TNFRSF1A-215ENST00000543359 VGFO15240 615 aaPredicted RBP19.56■□□□□ 0.72
TNFRSF1A-215ENST00000543359 SETD1AO15047 1707 aaKnown RBP19.56■□□□□ 0.72
TNFRSF1A-215ENST00000543359 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.56■□□□□ 0.72
TNFRSF1A-215ENST00000543359 RAB3GAP2Q9H2M9 1393 aa19.56■□□□□ 0.72
TNFRSF1A-215ENST00000543359 ACIN1Q9UKV3 1341 aaKnown RBP19.55■□□□□ 0.72
TNFRSF1A-215ENST00000543359 PPLO60437 1756 aa19.55■□□□□ 0.72
TNFRSF1A-215ENST00000543359 C19orf44Q9H6X5 657 aa19.55■□□□□ 0.72
TNFRSF1A-215ENST00000543359 CCDC144AA2RUR9 1427 aa19.53■□□□□ 0.72
TNFRSF1A-215ENST00000543359 C14orf37Q86TY3 774 aa19.5■□□□□ 0.71
TNFRSF1A-215ENST00000543359 CADPS2Q86UW7 1296 aa19.5■□□□□ 0.71
TNFRSF1A-215ENST00000543359 ADGRF5Q8IZF2 1346 aa19.49■□□□□ 0.71
TNFRSF1A-215ENST00000543359 IFT172Q9UG01 1749 aa19.48■□□□□ 0.71
TNFRSF1A-215ENST00000543359 ATF3P18847 181 aa19.48■□□□□ 0.71
TNFRSF1A-215ENST00000543359 RGL3Q3MIN7 710 aa19.48■□□□□ 0.71
TNFRSF1A-215ENST00000543359 PRAG1Q86YV5 1406 aa19.48■□□□□ 0.71
TNFRSF1A-215ENST00000543359 HRCP23327 699 aa19.47■□□□□ 0.71
TNFRSF1A-215ENST00000543359 DCCP43146 1447 aa19.47■□□□□ 0.71
TNFRSF1A-215ENST00000543359 ROBO2Q9HCK4 1378 aa19.45■□□□□ 0.7
TNFRSF1A-215ENST00000543359 PTCH1Q13635 1447 aa19.45■□□□□ 0.7
TNFRSF1A-215ENST00000543359 ANKRD30BQ9BXX2 1392 aa19.44■□□□□ 0.7
TNFRSF1A-215ENST00000543359 ADGRL3Q9HAR2 1447 aa19.44■□□□□ 0.7
TNFRSF1A-215ENST00000543359 MST1RQ04912 1400 aa19.43■□□□□ 0.7
TNFRSF1A-215ENST00000543359 PHLPP1O60346 1717 aa19.43■□□□□ 0.7
TNFRSF1A-215ENST00000543359 COL16A1Q07092 1604 aaPredicted RBP19.43■□□□□ 0.7
TNFRSF1A-215ENST00000543359 NALCNQ8IZF0 1738 aa19.42■□□□□ 0.7
TNFRSF1A-215ENST00000543359 BRINP3Q76B58 766 aa19.42■□□□□ 0.7
TNFRSF1A-215ENST00000543359 AHDC1Q5TGY3 1603 aaPredicted RBP19.41■□□□□ 0.7
TNFRSF1A-215ENST00000543359 SOCS7O14512 581 aa19.41■□□□□ 0.7
TNFRSF1A-215ENST00000543359 PIK3C2GO75747 1445 aa19.41■□□□□ 0.7
TNFRSF1A-215ENST00000543359 RGS17Q9UGC6 210 aaPredicted RBP19.4■□□□□ 0.7
TNFRSF1A-215ENST00000543359 NRXN1Q9ULB1 1477 aa19.39■□□□□ 0.69
TNFRSF1A-215ENST00000543359 ASXL1Q8IXJ9 1541 aa19.39■□□□□ 0.69
TNFRSF1A-215ENST00000543359 TECPR2O15040 1411 aa19.37■□□□□ 0.69
TNFRSF1A-215ENST00000543359 JCADQ9P266 1359 aa19.37■□□□□ 0.69
TNFRSF1A-215ENST00000543359 LRPPRCP42704 1394 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-215ENST00000543359 TMEM132EQ6IEE7 984 aa19.35■□□□□ 0.69
TNFRSF1A-215ENST00000543359 PHF23Q9BUL5 403 aaPredicted RBP19.35■□□□□ 0.69
TNFRSF1A-215ENST00000543359 C14orf93Q9H972 538 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-215ENST00000543359 MYOM2P54296 1465 aa19.35■□□□□ 0.69
TNFRSF1A-215ENST00000543359 ABCC11Q96J66 1382 aa19.34■□□□□ 0.69
TNFRSF1A-215ENST00000543359 C1orf167Q5SNV9 1468 aa19.34■□□□□ 0.69
TNFRSF1A-215ENST00000543359 NHSL1Q5SYE7 1610 aa19.33■□□□□ 0.69
TNFRSF1A-215ENST00000543359 WAPLQ7Z5K2 1190 aa19.31■□□□□ 0.68
TNFRSF1A-215ENST00000543359 STK26Q9P289 416 aa19.31■□□□□ 0.68
TNFRSF1A-215ENST00000543359 YTHDC2Q9H6S0 1430 aaKnown RBP19.31■□□□□ 0.68
TNFRSF1A-215ENST00000543359 KNDC1Q76NI1 1749 aa19.31■□□□□ 0.68
TNFRSF1A-215ENST00000543359 CFAP70Q5T0N1 1121 aa19.3■□□□□ 0.68
TNFRSF1A-215ENST00000543359 PLEKHH1Q9ULM0 1364 aa19.3■□□□□ 0.68
TNFRSF1A-215ENST00000543359 SHPRHQ149N8 1683 aa19.3■□□□□ 0.68
TNFRSF1A-215ENST00000543359 DDX17Q92841 729 aaKnown RBP19.29■□□□□ 0.68
TNFRSF1A-215ENST00000543359 SIRT1Q96EB6 747 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms