RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 PANK3Q9H999 370 aa14.6□□□□□ -0.07
CDH4-201ENST00000543233 PLCH2O75038 1416 aa14.6□□□□□ -0.07
CDH4-201ENST00000543233 CLCN1P35523 988 aa14.6□□□□□ -0.07
CDH4-201ENST00000543233 BACH2Q9BYV9 841 aa14.6□□□□□ -0.07
CDH4-201ENST00000543233 AMER1Q5JTC6 1135 aaPredicted RBP14.59□□□□□ -0.07
CDH4-201ENST00000543233 PRAG1Q86YV5 1406 aa14.59□□□□□ -0.07
CDH4-201ENST00000543233 A2MP01023 1474 aa14.58□□□□□ -0.08
CDH4-201ENST00000543233 DISP3Q9P2K9 1392 aa14.58□□□□□ -0.08
CDH4-201ENST00000543233 SCAPERQ9BY12 1400 aa14.58□□□□□ -0.08
CDH4-201ENST00000543233 NPM1P06748 294 aaKnown RBP eCLIP14.57□□□□□ -0.08
CDH4-201ENST00000543233 GTF2E1P29083 439 aaPredicted RBP14.57□□□□□ -0.08
CDH4-201ENST00000543233 MYBBP1AQ9BQG0 1328 aaKnown RBP14.56□□□□□ -0.08
CDH4-201ENST00000543233 KDM5DQ9BY66 1539 aa14.56□□□□□ -0.08
CDH4-201ENST00000543233 TMF1P82094 1093 aa14.55□□□□□ -0.08
CDH4-201ENST00000543233 GGT6Q6P531 493 aa14.55□□□□□ -0.08
CDH4-201ENST00000543233 TESK2Q96S53 571 aa14.55□□□□□ -0.08
CDH4-201ENST00000543233 NUDCQ9Y266 331 aa14.55□□□□□ -0.08
CDH4-201ENST00000543233 MYO5CQ9NQX4 1742 aa14.54□□□□□ -0.08
CDH4-201ENST00000543233 PLCD3Q8N3E9 789 aa14.54□□□□□ -0.08
CDH4-201ENST00000543233 PRDM10Q9NQV6 1147 aa14.54□□□□□ -0.08
CDH4-201ENST00000543233 SHROOM2Q13796 1616 aa14.54□□□□□ -0.08
CDH4-201ENST00000543233 ZCCHC11Q5TAX3 1644 aaKnown RBP14.54□□□□□ -0.08
CDH4-201ENST00000543233 KTN1Q86UP2 1357 aaKnown RBP14.54□□□□□ -0.08
CDH4-201ENST00000543233 RALBP1Q15311 655 aa14.54□□□□□ -0.08
CDH4-201ENST00000543233 NUTM2DQ5VT03 806 aaPredicted RBP14.52□□□□□ -0.08
CDH4-201ENST00000543233 NLRP13Q86W25 1043 aa14.52□□□□□ -0.09
CDH4-201ENST00000543233 DUOX2Q9NRD8 1548 aa14.51□□□□□ -0.09
CDH4-201ENST00000543233 CDCA7LQ96GN5 454 aa14.51□□□□□ -0.09
CDH4-201ENST00000543233 TPM2P07951 284 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 CFAP70Q5T0N1 1121 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 STAC3Q96MF2 364 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 PER1O15534 1290 aaPredicted RBP14.5□□□□□ -0.09
CDH4-201ENST00000543233 SKAP1Q86WV1 359 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 PANK2Q9BZ23 570 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 FANCAO15360 1455 aa14.5□□□□□ -0.09
CDH4-201ENST00000543233 FAM13BQ9NYF5 915 aa14.49□□□□□ -0.09
CDH4-201ENST00000543233 GZF1Q9H116 711 aaPredicted RBP14.49□□□□□ -0.09
CDH4-201ENST00000543233 CENPJQ9HC77 1338 aaPredicted RBP14.49□□□□□ -0.09
CDH4-201ENST00000543233 ERBINQ96RT1 1412 aa14.49□□□□□ -0.09
CDH4-201ENST00000543233 VGLL3A8MV65 326 aa14.48□□□□□ -0.09
CDH4-201ENST00000543233 KNSTRNQ9Y448 316 aa14.48□□□□□ -0.09
CDH4-201ENST00000543233 GOLGA6L3A6NEY3 463 aa14.48□□□□□ -0.09
CDH4-201ENST00000543233 KANK1Q14678 1352 aa14.47□□□□□ -0.09
CDH4-201ENST00000543233 ABCC1P33527 1531 aa14.47□□□□□ -0.09
CDH4-201ENST00000543233 RIMBP3CA6NJZ7 1639 aa14.47□□□□□ -0.09
CDH4-201ENST00000543233 RIMBP3BA6NNM3 1639 aa14.47□□□□□ -0.09
CDH4-201ENST00000543233 RIMBP3Q9UFD9 1639 aa14.47□□□□□ -0.09
CDH4-201ENST00000543233 IPO4Q8TEX9 1081 aaKnown RBP14.46□□□□□ -0.09
CDH4-201ENST00000543233 BRD4O60885 1362 aaPredicted RBP14.46□□□□□ -0.09
CDH4-201ENST00000543233 ADGRL1O94910 1474 aa14.46□□□□□ -0.09
CDH4-201ENST00000543233 WDR7Q9Y4E6 1490 aa14.46□□□□□ -0.09
CDH4-201ENST00000543233 TRIM44Q96DX7 344 aaPredicted RBP14.46□□□□□ -0.1
CDH4-201ENST00000543233 POLR1AO95602 1720 aaPredicted RBP14.45□□□□□ -0.1
CDH4-201ENST00000543233 ASXL2Q76L83 1435 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 EXOC6Q8TAG9 804 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 ADGRF5Q8IZF2 1346 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 PLIN1O60240 522 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 RAPGEF3O95398 923 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 MS4A1P11836 297 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 XRCC6P12956 609 aaKnown RBP eCLIP14.45□□□□□ -0.1
CDH4-201ENST00000543233 KIAA1211Q6ZU35 1233 aa14.45□□□□□ -0.1
CDH4-201ENST00000543233 SMG6Q86US8 1419 aaKnown RBP14.45□□□□□ -0.1
CDH4-201ENST00000543233 UNC13BO14795 1591 aa14.44□□□□□ -0.1
CDH4-201ENST00000543233 TRHP20396 242 aaPredicted RBP14.44□□□□□ -0.1
CDH4-201ENST00000543233 ESPNB1AK53 854 aa14.44□□□□□ -0.1
CDH4-201ENST00000543233 ANP32BQ92688 251 aaKnown RBP14.44□□□□□ -0.1
CDH4-201ENST00000543233 MAST1Q9Y2H9 1570 aa14.44□□□□□ -0.1
CDH4-201ENST00000543233 TNNT2P45379 298 aaPredicted RBP14.44□□□□□ -0.1
CDH4-201ENST00000543233 TRPM1Q7Z4N2 1603 aa14.43□□□□□ -0.1
CDH4-201ENST00000543233 NCLP19338 710 aaKnown RBP14.43□□□□□ -0.1
CDH4-201ENST00000543233 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
CDH4-201ENST00000543233 GPRASP1Q5JY77 1395 aa14.43□□□□□ -0.1
CDH4-201ENST00000543233 UHRF1BP1LA0JNW5 1464 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 PLXNC1O60486 1568 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 SLKQ9H2G2 1235 aaPredicted RBP14.42□□□□□ -0.1
CDH4-201ENST00000543233 ADAMTS8Q9UP79 889 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 TRAK1Q9UPV9 953 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 IQGAP3Q86VI3 1631 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 UGGT1Q9NYU2 1555 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 TMEM132EQ6IEE7 984 aa14.42□□□□□ -0.1
CDH4-201ENST00000543233 PARD3Q8TEW0 1356 aa14.41□□□□□ -0.1
CDH4-201ENST00000543233 ATP10AO60312 1499 aa14.41□□□□□ -0.1
CDH4-201ENST00000543233 SAFB2Q14151 953 aaKnown RBP eCLIP14.41□□□□□ -0.1
CDH4-201ENST00000543233 CCDC146Q8IYE0 955 aa14.41□□□□□ -0.1
CDH4-201ENST00000543233 RCAN3Q9UKA8 241 aa14.41□□□□□ -0.1
CDH4-201ENST00000543233 COL17A1Q9UMD9 1497 aaPredicted RBP14.41□□□□□ -0.1
CDH4-201ENST00000543233 FAM69CQ0P6D2 419 aa14.41□□□□□ -0.1
CDH4-201ENST00000543233 WDR43Q15061 677 aaKnown RBP eCLIP14.4□□□□□ -0.1
CDH4-201ENST00000543233 DHX37Q8IY37 1157 aaKnown RBP14.4□□□□□ -0.1
CDH4-201ENST00000543233 CFAP65Q6ZU64 1925 aaKnown RBP14.4□□□□□ -0.1
CDH4-201ENST00000543233 ZFYVE16Q7Z3T8 1539 aa14.39□□□□□ -0.11
CDH4-201ENST00000543233 LRPPRCP42704 1394 aaKnown RBP14.39□□□□□ -0.11
CDH4-201ENST00000543233 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
CDH4-201ENST00000543233 MYH16Q9H6N6 1097 aa14.38□□□□□ -0.11
CDH4-201ENST00000543233 PLPPR3Q6T4P5 718 aa14.38□□□□□ -0.11
CDH4-201ENST00000543233 SMAP1Q8IYB5 467 aaPredicted RBP14.38□□□□□ -0.11
CDH4-201ENST00000543233 ATP7AQ04656 1500 aa14.37□□□□□ -0.11
CDH4-201ENST00000543233 PPP2R1AP30153 589 aa14.37□□□□□ -0.11
CDH4-201ENST00000543233 CDK11BP21127 795 aaKnown RBP14.37□□□□□ -0.11
CDH4-201ENST00000543233 RRP1P56182 461 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms