RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 SLC4A1APQ9BWU0 796 aaKnown RBP19.6■□□□□ 0.73
LTBR-208ENST00000541005 RAB3GAP2Q9H2M9 1393 aa19.59■□□□□ 0.73
LTBR-208ENST00000541005 ILDR1Q86SU0 546 aaPredicted RBP19.59■□□□□ 0.73
LTBR-208ENST00000541005 PLEKHG1Q9ULL1 1385 aa19.57■□□□□ 0.72
LTBR-208ENST00000541005 DIP2AQ14689 1571 aa19.57■□□□□ 0.72
LTBR-208ENST00000541005 NWD1Q149M9 1564 aa19.57■□□□□ 0.72
LTBR-208ENST00000541005 CHD2O14647 1828 aaKnown RBP19.56■□□□□ 0.72
LTBR-208ENST00000541005 XIRP1Q702N8 1843 aaKnown RBP19.56■□□□□ 0.72
LTBR-208ENST00000541005 NEXMIFQ5QGS0 1516 aa19.56■□□□□ 0.72
LTBR-208ENST00000541005 PPLO60437 1756 aa19.55■□□□□ 0.72
LTBR-208ENST00000541005 HDGFP51858 240 aaKnown RBP19.54■□□□□ 0.72
LTBR-208ENST00000541005 MPHOSPH9Q99550 1183 aa19.54■□□□□ 0.72
LTBR-208ENST00000541005 NRXN3Q9Y4C0 1643 aa19.54■□□□□ 0.72
LTBR-208ENST00000541005 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
LTBR-208ENST00000541005 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.53■□□□□ 0.72
LTBR-208ENST00000541005 SETBP1Q9Y6X0 1596 aa19.53■□□□□ 0.72
LTBR-208ENST00000541005 IFT172Q9UG01 1749 aa19.51■□□□□ 0.71
LTBR-208ENST00000541005 HRCP23327 699 aa19.51■□□□□ 0.71
LTBR-208ENST00000541005 LRRC7Q96NW7 1537 aa19.51■□□□□ 0.71
LTBR-208ENST00000541005 ADAMTS13Q76LX8 1427 aa19.5■□□□□ 0.71
LTBR-208ENST00000541005 NKTRP30414 1462 aaKnown RBP19.49■□□□□ 0.71
LTBR-208ENST00000541005 PPP1R15AO75807 674 aaPredicted RBP19.49■□□□□ 0.71
LTBR-208ENST00000541005 CCDC144AA2RUR9 1427 aa19.49■□□□□ 0.71
LTBR-208ENST00000541005 FOXD1Q16676 465 aa19.47■□□□□ 0.71
LTBR-208ENST00000541005 SETD1AO15047 1707 aaKnown RBP19.47■□□□□ 0.71
LTBR-208ENST00000541005 SPATA31E1Q6ZUB1 1445 aa19.45■□□□□ 0.7
LTBR-208ENST00000541005 SLC26A8Q96RN1 970 aa19.45■□□□□ 0.7
LTBR-208ENST00000541005 PIK3R4Q99570 1358 aa19.44■□□□□ 0.7
LTBR-208ENST00000541005 ALKQ9UM73 1620 aa19.44■□□□□ 0.7
LTBR-208ENST00000541005 TBX22Q9Y458 520 aa19.44■□□□□ 0.7
LTBR-208ENST00000541005 XRN1Q8IZH2 1706 aaKnown RBP19.43■□□□□ 0.7
LTBR-208ENST00000541005 KCNA6P17658 529 aa19.43■□□□□ 0.7
LTBR-208ENST00000541005 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
LTBR-208ENST00000541005 RPGRIP1LQ68CZ1 1315 aa19.42■□□□□ 0.7
LTBR-208ENST00000541005 NUTM2DQ5VT03 806 aaPredicted RBP19.41■□□□□ 0.7
LTBR-208ENST00000541005 BCANQ96GW7 911 aa19.4■□□□□ 0.7
LTBR-208ENST00000541005 ANKRD30BQ9BXX2 1392 aa19.38■□□□□ 0.69
LTBR-208ENST00000541005 UBAP1LF5GYI3 381 aa19.36■□□□□ 0.69
LTBR-208ENST00000541005 TMEM94Q12767 1356 aa19.35■□□□□ 0.69
LTBR-208ENST00000541005 VGFO15240 615 aaPredicted RBP19.35■□□□□ 0.69
LTBR-208ENST00000541005 PTPRUQ92729 1446 aa19.34■□□□□ 0.69
LTBR-208ENST00000541005 NCOA3Q9Y6Q9 1424 aa19.34■□□□□ 0.69
LTBR-208ENST00000541005 SENP3Q9H4L4 574 aaPredicted RBP19.33■□□□□ 0.68
LTBR-208ENST00000541005 PRAG1Q86YV5 1406 aa19.33■□□□□ 0.68
LTBR-208ENST00000541005 TOM1O60784 492 aa19.32■□□□□ 0.68
LTBR-208ENST00000541005 MYOM2P54296 1465 aa19.32■□□□□ 0.68
LTBR-208ENST00000541005 METP08581 1390 aa19.32■□□□□ 0.68
LTBR-208ENST00000541005 NRXN1Q9ULB1 1477 aa19.31■□□□□ 0.68
LTBR-208ENST00000541005 LAMC1P11047 1609 aa19.31■□□□□ 0.68
LTBR-208ENST00000541005 PROSER2Q86WR7 435 aaPredicted RBP19.3■□□□□ 0.68
LTBR-208ENST00000541005 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.29■□□□□ 0.68
LTBR-208ENST00000541005 PIK3C2GO75747 1445 aa19.29■□□□□ 0.68
LTBR-208ENST00000541005 KNDC1Q76NI1 1749 aa19.28■□□□□ 0.68
LTBR-208ENST00000541005 ADGRF5Q8IZF2 1346 aa19.26■□□□□ 0.67
LTBR-208ENST00000541005 PTCH1Q13635 1447 aa19.26■□□□□ 0.67
LTBR-208ENST00000541005 RGL3Q3MIN7 710 aa19.26■□□□□ 0.67
LTBR-208ENST00000541005 AMOTL2Q9Y2J4 779 aa19.26■□□□□ 0.67
LTBR-208ENST00000541005 MSH6P52701 1360 aa19.26■□□□□ 0.67
LTBR-208ENST00000541005 ASXL1Q8IXJ9 1541 aa19.25■□□□□ 0.67
LTBR-208ENST00000541005 NALCNQ8IZF0 1738 aa19.25■□□□□ 0.67
LTBR-208ENST00000541005 TRIM26Q12899 539 aaPredicted RBP19.23■□□□□ 0.67
LTBR-208ENST00000541005 DCCP43146 1447 aa19.23■□□□□ 0.67
LTBR-208ENST00000541005 ROBO1Q9Y6N7 1651 aa19.23■□□□□ 0.67
LTBR-208ENST00000541005 TECPR2O15040 1411 aa19.21■□□□□ 0.67
LTBR-208ENST00000541005 RBM33Q96EV2 1170 aaKnown RBP19.21■□□□□ 0.67
LTBR-208ENST00000541005 FAM135BQ49AJ0 1406 aa19.2■□□□□ 0.66
LTBR-208ENST00000541005 PIP4K2BP78356 416 aa19.2■□□□□ 0.66
LTBR-208ENST00000541005 ADGRL3Q9HAR2 1447 aa19.19■□□□□ 0.66
LTBR-208ENST00000541005 STAC3Q96MF2 364 aa19.17■□□□□ 0.66
LTBR-208ENST00000541005 C19orf44Q9H6X5 657 aa19.17■□□□□ 0.66
LTBR-208ENST00000541005 SCAF1Q9H7N4 1312 aaKnown RBP19.17■□□□□ 0.66
LTBR-208ENST00000541005 ROBO2Q9HCK4 1378 aa19.17■□□□□ 0.66
LTBR-208ENST00000541005 KIAA1210Q9ULL0 1709 aa19.16■□□□□ 0.66
LTBR-208ENST00000541005 LRPPRCP42704 1394 aaKnown RBP19.16■□□□□ 0.66
LTBR-208ENST00000541005 DHX57Q6P158 1386 aaKnown RBP19.16■□□□□ 0.66
LTBR-208ENST00000541005 C14orf93Q9H972 538 aaKnown RBP19.15■□□□□ 0.66
LTBR-208ENST00000541005 ADGRB1O14514 1584 aa19.15■□□□□ 0.66
LTBR-208ENST00000541005 HSPA1LP34931 641 aa19.14■□□□□ 0.65
LTBR-208ENST00000541005 CADPS2Q86UW7 1296 aa19.14■□□□□ 0.65
LTBR-208ENST00000541005 ABCC11Q96J66 1382 aa19.14■□□□□ 0.65
LTBR-208ENST00000541005 C14orf37Q86TY3 774 aa19.13■□□□□ 0.65
LTBR-208ENST00000541005 YTHDC2Q9H6S0 1430 aaKnown RBP19.13■□□□□ 0.65
LTBR-208ENST00000541005 CDC42BPGQ6DT37 1551 aa19.13■□□□□ 0.65
LTBR-208ENST00000541005 PHLPP1O60346 1717 aa19.11■□□□□ 0.65
LTBR-208ENST00000541005 SLAIN2Q9P270 581 aa19.11■□□□□ 0.65
LTBR-208ENST00000541005 DLC1Q96QB1 1528 aa19.1■□□□□ 0.65
LTBR-208ENST00000541005 MST1RQ04912 1400 aa19.1■□□□□ 0.65
LTBR-208ENST00000541005 ATF3P18847 181 aa19.1■□□□□ 0.65
LTBR-208ENST00000541005 DCAF11Q8TEB1 546 aa19.1■□□□□ 0.65
LTBR-208ENST00000541005 AHDC1Q5TGY3 1603 aaPredicted RBP19.1■□□□□ 0.65
LTBR-208ENST00000541005 NHSL1Q5SYE7 1610 aa19.09■□□□□ 0.65
LTBR-208ENST00000541005 COL16A1Q07092 1604 aaPredicted RBP19.08■□□□□ 0.65
LTBR-208ENST00000541005 CFAP70Q5T0N1 1121 aa19.08■□□□□ 0.64
LTBR-208ENST00000541005 TMEM132EQ6IEE7 984 aa19.07■□□□□ 0.64
LTBR-208ENST00000541005 ARHGEF28Q8N1W1 1705 aaKnown RBP19.07■□□□□ 0.64
LTBR-208ENST00000541005 FMN2Q9NZ56 1722 aa19.06■□□□□ 0.64
LTBR-208ENST00000541005 SIRT1Q96EB6 747 aa19.06■□□□□ 0.64
LTBR-208ENST00000541005 ADGRB2O60241 1585 aa19.04■□□□□ 0.64
LTBR-208ENST00000541005 MED1Q15648 1581 aaPredicted RBP19.04■□□□□ 0.64
LTBR-208ENST00000541005 KDM2AQ9Y2K7 1162 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms