RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 PLEKHG1Q9ULL1 1385 aa31.74■■■□□ 2.67
CHFR-217ENST00000540537 SLC26A8Q96RN1 970 aa31.74■■■□□ 2.67
CHFR-217ENST00000540537 CHGAP10645 457 aaKnown RBP31.73■■■□□ 2.67
CHFR-217ENST00000540537 HFM1A2PYH4 1435 aa31.72■■■□□ 2.67
CHFR-217ENST00000540537 XIRP1Q702N8 1843 aaKnown RBP31.72■■■□□ 2.67
CHFR-217ENST00000540537 SPHKAPQ2M3C7 1700 aa31.72■■■□□ 2.67
CHFR-217ENST00000540537 PPP1R15AO75807 674 aaPredicted RBP31.71■■■□□ 2.67
CHFR-217ENST00000540537 KCNA6P17658 529 aa31.71■■■□□ 2.67
CHFR-217ENST00000540537 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.71■■■□□ 2.67
CHFR-217ENST00000540537 BCANQ96GW7 911 aa31.69■■■□□ 2.66
CHFR-217ENST00000540537 NWD1Q149M9 1564 aa31.68■■■□□ 2.66
CHFR-217ENST00000540537 DISP3Q9P2K9 1392 aa31.67■■■□□ 2.66
CHFR-217ENST00000540537 HSPA1LP34931 641 aa31.65■■■□□ 2.66
CHFR-217ENST00000540537 NKTRP30414 1462 aaKnown RBP31.65■■■□□ 2.66
CHFR-217ENST00000540537 TMEM94Q12767 1356 aa31.62■■■□□ 2.65
CHFR-217ENST00000540537 TBX22Q9Y458 520 aa31.6■■■□□ 2.65
CHFR-217ENST00000540537 CHD2O14647 1828 aaKnown RBP31.6■■■□□ 2.65
CHFR-217ENST00000540537 DIP2AQ14689 1571 aa31.59■■■□□ 2.65
CHFR-217ENST00000540537 TRPM2O94759 1503 aa31.59■■■□□ 2.65
CHFR-217ENST00000540537 PROSER2Q86WR7 435 aaPredicted RBP31.58■■■□□ 2.65
CHFR-217ENST00000540537 SENP3Q9H4L4 574 aaPredicted RBP31.58■■■□□ 2.65
CHFR-217ENST00000540537 NUTM2DQ5VT03 806 aaPredicted RBP31.57■■■□□ 2.64
CHFR-217ENST00000540537 ADAMTS13Q76LX8 1427 aa31.57■■■□□ 2.64
CHFR-217ENST00000540537 TRIM52Q96A61 297 aa31.56■■■□□ 2.64
CHFR-217ENST00000540537 CLTCL1P53675 1640 aa31.55■■■□□ 2.64
CHFR-217ENST00000540537 PIK3R4Q99570 1358 aa31.51■■■□□ 2.63
CHFR-217ENST00000540537 KIF1BO60333 1816 aa31.48■■■□□ 2.63
CHFR-217ENST00000540537 ZNF326Q5BKZ1 582 aaKnown RBP31.48■■■□□ 2.63
CHFR-217ENST00000540537 RBM33Q96EV2 1170 aaKnown RBP31.48■■■□□ 2.63
CHFR-217ENST00000540537 SLC4A1APQ9BWU0 796 aaKnown RBP31.48■■■□□ 2.63
CHFR-217ENST00000540537 FAM135BQ49AJ0 1406 aa31.46■■■□□ 2.63
CHFR-217ENST00000540537 SETBP1Q9Y6X0 1596 aa31.46■■■□□ 2.63
CHFR-217ENST00000540537 MSH6P52701 1360 aa31.45■■■□□ 2.63
CHFR-217ENST00000540537 NRXN3Q9Y4C0 1643 aa31.45■■■□□ 2.62
CHFR-217ENST00000540537 NCOA3Q9Y6Q9 1424 aa31.44■■■□□ 2.62
CHFR-217ENST00000540537 NEXMIFQ5QGS0 1516 aa31.44■■■□□ 2.62
CHFR-217ENST00000540537 ILDR2Q71H61 639 aa31.41■■■□□ 2.62
CHFR-217ENST00000540537 MED1Q15648 1581 aaPredicted RBP31.41■■■□□ 2.62
CHFR-217ENST00000540537 PTPRUQ92729 1446 aa31.38■■■□□ 2.61
CHFR-217ENST00000540537 ROBO1Q9Y6N7 1651 aa31.36■■■□□ 2.61
CHFR-217ENST00000540537 AMOTL2Q9Y2J4 779 aa31.35■■■□□ 2.61
CHFR-217ENST00000540537 XRN1Q8IZH2 1706 aaKnown RBP31.33■■■□□ 2.61
CHFR-217ENST00000540537 ACIN1Q9UKV3 1341 aaKnown RBP31.31■■■□□ 2.6
CHFR-217ENST00000540537 SLAIN2Q9P270 581 aa31.31■■■□□ 2.6
CHFR-217ENST00000540537 RPGRIP1LQ68CZ1 1315 aa31.3■■■□□ 2.6
CHFR-217ENST00000540537 C14orf37Q86TY3 774 aa31.3■■■□□ 2.6
CHFR-217ENST00000540537 METP08581 1390 aa31.3■■■□□ 2.6
CHFR-217ENST00000540537 FOXD1Q16676 465 aa31.29■■■□□ 2.6
CHFR-217ENST00000540537 VGFO15240 615 aaPredicted RBP31.28■■■□□ 2.6
CHFR-217ENST00000540537 MPHOSPH9Q99550 1183 aa31.28■■■□□ 2.6
CHFR-217ENST00000540537 C19orf44Q9H6X5 657 aa31.28■■■□□ 2.6
CHFR-217ENST00000540537 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.28■■■□□ 2.6
CHFR-217ENST00000540537 SETD5Q9C0A6 1442 aa31.27■■■□□ 2.6
CHFR-217ENST00000540537 PPLO60437 1756 aa31.25■■■□□ 2.59
CHFR-217ENST00000540537 CADPS2Q86UW7 1296 aa31.25■■■□□ 2.59
CHFR-217ENST00000540537 CCDC144AA2RUR9 1427 aa31.24■■■□□ 2.59
CHFR-217ENST00000540537 ATF3P18847 181 aa31.22■■■□□ 2.59
CHFR-217ENST00000540537 DCCP43146 1447 aa31.21■■■□□ 2.59
CHFR-217ENST00000540537 SETD1AO15047 1707 aaKnown RBP31.21■■■□□ 2.59
CHFR-217ENST00000540537 SOCS7O14512 581 aa31.19■■■□□ 2.58
CHFR-217ENST00000540537 PHLPP1O60346 1717 aa31.18■■■□□ 2.58
CHFR-217ENST00000540537 PHF23Q9BUL5 403 aaPredicted RBP31.17■■■□□ 2.58
CHFR-217ENST00000540537 SPATA31E1Q6ZUB1 1445 aa31.16■■■□□ 2.58
CHFR-217ENST00000540537 RAB3GAP2Q9H2M9 1393 aa31.14■■■□□ 2.58
CHFR-217ENST00000540537 PTCH1Q13635 1447 aa31.13■■■□□ 2.57
CHFR-217ENST00000540537 ADGRL3Q9HAR2 1447 aa31.12■■■□□ 2.57
CHFR-217ENST00000540537 PRAG1Q86YV5 1406 aa31.11■■■□□ 2.57
CHFR-217ENST00000540537 COL16A1Q07092 1604 aaPredicted RBP31.1■■■□□ 2.57
CHFR-217ENST00000540537 IFT172Q9UG01 1749 aa31.1■■■□□ 2.57
CHFR-217ENST00000540537 AHDC1Q5TGY3 1603 aaPredicted RBP31.09■■■□□ 2.57
CHFR-217ENST00000540537 ANKRD30BQ9BXX2 1392 aa31.09■■■□□ 2.57
CHFR-217ENST00000540537 RGL3Q3MIN7 710 aa31.08■■■□□ 2.57
CHFR-217ENST00000540537 NALCNQ8IZF0 1738 aa31.07■■■□□ 2.56
CHFR-217ENST00000540537 JCADQ9P266 1359 aa31.07■■■□□ 2.56
CHFR-217ENST00000540537 MST1RQ04912 1400 aa31.07■■■□□ 2.56
CHFR-217ENST00000540537 ADGRF5Q8IZF2 1346 aa31.05■■■□□ 2.56
CHFR-217ENST00000540537 BRINP3Q76B58 766 aa31.05■■■□□ 2.56
CHFR-217ENST00000540537 ROBO2Q9HCK4 1378 aa31.05■■■□□ 2.56
CHFR-217ENST00000540537 ASXL1Q8IXJ9 1541 aa31.01■■■□□ 2.55
CHFR-217ENST00000540537 PIK3C2GO75747 1445 aa30.98■■■□□ 2.55
CHFR-217ENST00000540537 HRCP23327 699 aa30.97■■■□□ 2.55
CHFR-217ENST00000540537 RGS17Q9UGC6 210 aaPredicted RBP30.97■■■□□ 2.55
CHFR-217ENST00000540537 NHSL1Q5SYE7 1610 aa30.95■■■□□ 2.54
CHFR-217ENST00000540537 SHPRHQ149N8 1683 aa30.94■■■□□ 2.54
CHFR-217ENST00000540537 TECPR2O15040 1411 aa30.93■■■□□ 2.54
CHFR-217ENST00000540537 SPATA31A6Q5VVP1 1343 aa30.93■■■□□ 2.54
CHFR-217ENST00000540537 C1orf167Q5SNV9 1468 aa30.92■■■□□ 2.54
CHFR-217ENST00000540537 LRPPRCP42704 1394 aaKnown RBP30.92■■■□□ 2.54
CHFR-217ENST00000540537 MYOM2P54296 1465 aa30.91■■■□□ 2.54
CHFR-217ENST00000540537 NRXN1Q9ULB1 1477 aa30.91■■■□□ 2.54
CHFR-217ENST00000540537 KNDC1Q76NI1 1749 aa30.9■■■□□ 2.54
CHFR-217ENST00000540537 ABCC11Q96J66 1382 aa30.88■■■□□ 2.53
CHFR-217ENST00000540537 CDC42BPGQ6DT37 1551 aa30.86■■■□□ 2.53
CHFR-217ENST00000540537 LRP6O75581 1613 aa30.85■■■□□ 2.53
CHFR-217ENST00000540537 STK26Q9P289 416 aa30.85■■■□□ 2.53
CHFR-217ENST00000540537 LAMC1P11047 1609 aa30.84■■■□□ 2.53
CHFR-217ENST00000540537 TMEM132EQ6IEE7 984 aa30.84■■■□□ 2.53
CHFR-217ENST00000540537 C14orf93Q9H972 538 aaKnown RBP30.84■■■□□ 2.53
CHFR-217ENST00000540537 YTHDC2Q9H6S0 1430 aaKnown RBP30.83■■■□□ 2.53
CHFR-217ENST00000540537 LRRC59Q96AG4 307 aaKnown RBP30.81■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms