RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 STAG3Q9UJ98 1225 aa27.27■■□□□ 1.96
TNFRSF1A-213ENST00000540022 TMEM131LA2VDJ0 1609 aa27.26■■□□□ 1.95
TNFRSF1A-213ENST00000540022 KIF1BO60333 1816 aa27.24■■□□□ 1.95
TNFRSF1A-213ENST00000540022 ZNF326Q5BKZ1 582 aaKnown RBP27.24■■□□□ 1.95
TNFRSF1A-213ENST00000540022 ANKLE2Q86XL3 938 aa27.24■■□□□ 1.95
TNFRSF1A-213ENST00000540022 DCAF11Q8TEB1 546 aa27.23■■□□□ 1.95
TNFRSF1A-213ENST00000540022 ZNF335Q9H4Z2 1342 aaPredicted RBP27.22■■□□□ 1.95
TNFRSF1A-213ENST00000540022 MED14O60244 1454 aa27.22■■□□□ 1.95
TNFRSF1A-213ENST00000540022 PPP1R15AO75807 674 aaPredicted RBP27.21■■□□□ 1.95
TNFRSF1A-213ENST00000540022 KDM5AP29375 1690 aaKnown RBP27.21■■□□□ 1.95
TNFRSF1A-213ENST00000540022 KDM2AQ9Y2K7 1162 aa27.2■■□□□ 1.94
TNFRSF1A-213ENST00000540022 MYO5BQ9ULV0 1848 aa27.2■■□□□ 1.94
TNFRSF1A-213ENST00000540022 IQGAP1P46940 1657 aa27.19■■□□□ 1.94
TNFRSF1A-213ENST00000540022 TMEM2Q9UHN6 1383 aa27.18■■□□□ 1.94
TNFRSF1A-213ENST00000540022 SLIT1O75093 1534 aa27.18■■□□□ 1.94
TNFRSF1A-213ENST00000540022 NPHP4O75161 1426 aaPredicted RBP27.18■■□□□ 1.94
TNFRSF1A-213ENST00000540022 RPGRIP1LQ68CZ1 1315 aa27.18■■□□□ 1.94
TNFRSF1A-213ENST00000540022 ARHGAP23Q9P227 1491 aa27.17■■□□□ 1.94
TNFRSF1A-213ENST00000540022 LTKP29376 864 aa27.16■■□□□ 1.94
TNFRSF1A-213ENST00000540022 NUTM2DQ5VT03 806 aaPredicted RBP27.16■■□□□ 1.94
TNFRSF1A-213ENST00000540022 IQSEC2Q5JU85 1478 aa27.14■■□□□ 1.93
TNFRSF1A-213ENST00000540022 ZFYVE9O95405 1425 aa27.13■■□□□ 1.93
TNFRSF1A-213ENST00000540022 NEXMIFQ5QGS0 1516 aa27.13■■□□□ 1.93
TNFRSF1A-213ENST00000540022 RIMS2Q9UQ26 1411 aa27.12■■□□□ 1.93
TNFRSF1A-213ENST00000540022 SCAF11Q99590 1463 aaKnown RBP27.12■■□□□ 1.93
TNFRSF1A-213ENST00000540022 NBPF8Q3BBV2 869 aa27.11■■□□□ 1.93
TNFRSF1A-213ENST00000540022 TXNDC2Q86VQ3 553 aa27.11■■□□□ 1.93
TNFRSF1A-213ENST00000540022 STAC3Q96MF2 364 aa27.11■■□□□ 1.93
TNFRSF1A-213ENST00000540022 SENP3Q9H4L4 574 aaPredicted RBP27.11■■□□□ 1.93
TNFRSF1A-213ENST00000540022 ADGRF5Q8IZF2 1346 aa27.1■■□□□ 1.93
TNFRSF1A-213ENST00000540022 MYOM2P54296 1465 aa27.09■■□□□ 1.93
TNFRSF1A-213ENST00000540022 IFT172Q9UG01 1749 aa27.08■■□□□ 1.93
TNFRSF1A-213ENST00000540022 PRAG1Q86YV5 1406 aa27.07■■□□□ 1.92
TNFRSF1A-213ENST00000540022 VGFO15240 615 aaPredicted RBP27.06■■□□□ 1.92
TNFRSF1A-213ENST00000540022 STRCP1A6NGW2 1772 aa27.06■■□□□ 1.92
TNFRSF1A-213ENST00000540022 PPLO60437 1756 aa27.06■■□□□ 1.92
TNFRSF1A-213ENST00000540022 EID1Q9Y6B2 187 aa27.06■■□□□ 1.92
TNFRSF1A-213ENST00000540022 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.04■■□□□ 1.92
TNFRSF1A-213ENST00000540022 CPS1P31327 1500 aa27.04■■□□□ 1.92
TNFRSF1A-213ENST00000540022 NRXN1Q9ULB1 1477 aa27.04■■□□□ 1.92
TNFRSF1A-213ENST00000540022 HDGFP51858 240 aaKnown RBP27.02■■□□□ 1.92
TNFRSF1A-213ENST00000540022 PIK3C2GO75747 1445 aa26.99■■□□□ 1.91
TNFRSF1A-213ENST00000540022 PLEKHG1Q9ULL1 1385 aa26.96■■□□□ 1.91
TNFRSF1A-213ENST00000540022 CFAP70Q5T0N1 1121 aa26.95■■□□□ 1.9
TNFRSF1A-213ENST00000540022 SLC26A8Q96RN1 970 aa26.94■■□□□ 1.9
TNFRSF1A-213ENST00000540022 RALGAPBQ86X10 1494 aa26.94■■□□□ 1.9
TNFRSF1A-213ENST00000540022 NBPF1Q3BBV0 1214 aa26.93■■□□□ 1.9
TNFRSF1A-213ENST00000540022 BCANQ96GW7 911 aa26.93■■□□□ 1.9
TNFRSF1A-213ENST00000540022 C14orf93Q9H972 538 aaKnown RBP26.92■■□□□ 1.9
TNFRSF1A-213ENST00000540022 TRPM1Q7Z4N2 1603 aa26.91■■□□□ 1.9
TNFRSF1A-213ENST00000540022 ADAMTS13Q76LX8 1427 aa26.91■■□□□ 1.9
TNFRSF1A-213ENST00000540022 NRXN3Q9Y4C0 1643 aa26.89■■□□□ 1.9
TNFRSF1A-213ENST00000540022 ROCK2O75116 1388 aaKnown RBP26.89■■□□□ 1.89
TNFRSF1A-213ENST00000540022 LRRC7Q96NW7 1537 aa26.88■■□□□ 1.89
TNFRSF1A-213ENST00000540022 UBAP1LF5GYI3 381 aa26.88■■□□□ 1.89
TNFRSF1A-213ENST00000540022 XIRP1Q702N8 1843 aaKnown RBP26.87■■□□□ 1.89
TNFRSF1A-213ENST00000540022 SETBP1Q9Y6X0 1596 aa26.86■■□□□ 1.89
TNFRSF1A-213ENST00000540022 GPRASP1Q5JY77 1395 aa26.86■■□□□ 1.89
TNFRSF1A-213ENST00000540022 ALKQ9UM73 1620 aa26.84■■□□□ 1.89
TNFRSF1A-213ENST00000540022 CARD11Q9BXL7 1154 aa26.84■■□□□ 1.89
TNFRSF1A-213ENST00000540022 KIAA1210Q9ULL0 1709 aa26.83■■□□□ 1.89
TNFRSF1A-213ENST00000540022 TMEM132EQ6IEE7 984 aa26.82■■□□□ 1.88
TNFRSF1A-213ENST00000540022 TBX22Q9Y458 520 aa26.82■■□□□ 1.88
TNFRSF1A-213ENST00000540022 LAMC1P11047 1609 aa26.8■■□□□ 1.88
TNFRSF1A-213ENST00000540022 ADGRB1O14514 1584 aa26.8■■□□□ 1.88
TNFRSF1A-213ENST00000540022 METP08581 1390 aa26.8■■□□□ 1.88
TNFRSF1A-213ENST00000540022 ASXL1Q8IXJ9 1541 aa26.79■■□□□ 1.88
TNFRSF1A-213ENST00000540022 CHD2O14647 1828 aaKnown RBP26.79■■□□□ 1.88
TNFRSF1A-213ENST00000540022 NWD1Q149M9 1564 aa26.78■■□□□ 1.88
TNFRSF1A-213ENST00000540022 TOM1O60784 492 aa26.76■■□□□ 1.87
TNFRSF1A-213ENST00000540022 PTPRUQ92729 1446 aa26.76■■□□□ 1.87
TNFRSF1A-213ENST00000540022 SETD1AO15047 1707 aaKnown RBP26.76■■□□□ 1.87
TNFRSF1A-213ENST00000540022 DIP2AQ14689 1571 aa26.75■■□□□ 1.87
TNFRSF1A-213ENST00000540022 KCNA6P17658 529 aa26.75■■□□□ 1.87
TNFRSF1A-213ENST00000540022 USP47Q96K76 1375 aa26.73■■□□□ 1.87
TNFRSF1A-213ENST00000540022 EIF4G2P78344 907 aaKnown RBP eCLIP26.72■■□□□ 1.87
TNFRSF1A-213ENST00000540022 HSPA5P11021 654 aaKnown RBP26.71■■□□□ 1.87
TNFRSF1A-213ENST00000540022 YTHDC2Q9H6S0 1430 aaKnown RBP26.71■■□□□ 1.87
TNFRSF1A-213ENST00000540022 NKTRP30414 1462 aaKnown RBP26.7■■□□□ 1.87
TNFRSF1A-213ENST00000540022 PIP4K2BP78356 416 aa26.7■■□□□ 1.86
TNFRSF1A-213ENST00000540022 STK26Q9P289 416 aa26.7■■□□□ 1.86
TNFRSF1A-213ENST00000540022 TRAK1Q9UPV9 953 aa26.7■■□□□ 1.86
TNFRSF1A-213ENST00000540022 LRPPRCP42704 1394 aaKnown RBP26.68■■□□□ 1.86
TNFRSF1A-213ENST00000540022 HIRIP3Q9BW71 556 aaPredicted RBP26.68■■□□□ 1.86
TNFRSF1A-213ENST00000540022 AMOTL2Q9Y2J4 779 aa26.68■■□□□ 1.86
TNFRSF1A-213ENST00000540022 SCAF1Q9H7N4 1312 aaKnown RBP26.68■■□□□ 1.86
TNFRSF1A-213ENST00000540022 TMEM94Q12767 1356 aa26.68■■□□□ 1.86
TNFRSF1A-213ENST00000540022 PIK3R4Q99570 1358 aa26.67■■□□□ 1.86
TNFRSF1A-213ENST00000540022 ABCC11Q96J66 1382 aa26.65■■□□□ 1.86
TNFRSF1A-213ENST00000540022 PROSER2Q86WR7 435 aaPredicted RBP26.65■■□□□ 1.86
TNFRSF1A-213ENST00000540022 RBM33Q96EV2 1170 aaKnown RBP26.65■■□□□ 1.86
TNFRSF1A-213ENST00000540022 ST20-MTHFSA0A0A6YYL1 179 aa26.64■■□□□ 1.85
TNFRSF1A-213ENST00000540022 EIF3AQ14152 1382 aaKnown RBP26.61■■□□□ 1.85
TNFRSF1A-213ENST00000540022 XRN1Q8IZH2 1706 aaKnown RBP26.61■■□□□ 1.85
TNFRSF1A-213ENST00000540022 TECPR2O15040 1411 aa26.6■■□□□ 1.85
TNFRSF1A-213ENST00000540022 HSPA1LP34931 641 aa26.6■■□□□ 1.85
TNFRSF1A-213ENST00000540022 ROBO2Q9HCK4 1378 aa26.58■■□□□ 1.85
TNFRSF1A-213ENST00000540022 DLC1Q96QB1 1528 aa26.58■■□□□ 1.84
TNFRSF1A-213ENST00000540022 CENPJQ9HC77 1338 aaPredicted RBP26.57■■□□□ 1.84
TNFRSF1A-213ENST00000540022 PRAM1Q96QH2 718 aa26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms