RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
CIITA-203ENST00000537380 IDI1Q13907 227 aa13.46□□□□□ -0.25
CIITA-203ENST00000537380 SLC52A1Q9NWF4 448 aa13.46□□□□□ -0.25
CIITA-203ENST00000537380 MYO5BQ9ULV0 1848 aa13.46□□□□□ -0.26
CIITA-203ENST00000537380 IQGAP1P46940 1657 aa13.45□□□□□ -0.26
CIITA-203ENST00000537380 SCAF11Q99590 1463 aaKnown RBP13.44□□□□□ -0.26
CIITA-203ENST00000537380 CLTCL1P53675 1640 aa13.44□□□□□ -0.26
CIITA-203ENST00000537380 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
CIITA-203ENST00000537380 LTBP4Q8N2S1 1624 aa13.43□□□□□ -0.26
CIITA-203ENST00000537380 ANKLE2Q86XL3 938 aa13.43□□□□□ -0.26
CIITA-203ENST00000537380 RPGRIP1LQ68CZ1 1315 aa13.41□□□□□ -0.26
CIITA-203ENST00000537380 KIF1BO60333 1816 aa13.41□□□□□ -0.26
CIITA-203ENST00000537380 NPHP4O75161 1426 aaPredicted RBP13.41□□□□□ -0.26
CIITA-203ENST00000537380 ZFYVE9O95405 1425 aa13.4□□□□□ -0.26
CIITA-203ENST00000537380 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
CIITA-203ENST00000537380 LTKP29376 864 aa13.38□□□□□ -0.27
CIITA-203ENST00000537380 PRAG1Q86YV5 1406 aa13.38□□□□□ -0.27
CIITA-203ENST00000537380 MYOM2P54296 1465 aa13.37□□□□□ -0.27
CIITA-203ENST00000537380 IQSEC2Q5JU85 1478 aa13.37□□□□□ -0.27
CIITA-203ENST00000537380 RALGAPBQ86X10 1494 aa13.37□□□□□ -0.27
CIITA-203ENST00000537380 DCAF11Q8TEB1 546 aa13.37□□□□□ -0.27
CIITA-203ENST00000537380 STAG3Q9UJ98 1225 aa13.37□□□□□ -0.27
CIITA-203ENST00000537380 NBPF8Q3BBV2 869 aa13.36□□□□□ -0.27
CIITA-203ENST00000537380 EID1Q9Y6B2 187 aa13.36□□□□□ -0.27
CIITA-203ENST00000537380 ZNF335Q9H4Z2 1342 aaPredicted RBP13.36□□□□□ -0.27
CIITA-203ENST00000537380 TXNDC2Q86VQ3 553 aa13.35□□□□□ -0.27
CIITA-203ENST00000537380 RIMS2Q9UQ26 1411 aa13.35□□□□□ -0.27
CIITA-203ENST00000537380 IFT172Q9UG01 1749 aa13.35□□□□□ -0.27
CIITA-203ENST00000537380 NRXN1Q9ULB1 1477 aa13.35□□□□□ -0.27
CIITA-203ENST00000537380 STRCP1A6NGW2 1772 aa13.35□□□□□ -0.27
CIITA-203ENST00000537380 CPS1P31327 1500 aa13.34□□□□□ -0.27
CIITA-203ENST00000537380 GPRASP1Q5JY77 1395 aa13.34□□□□□ -0.27
CIITA-203ENST00000537380 KIAA1210Q9ULL0 1709 aa13.33□□□□□ -0.27
CIITA-203ENST00000537380 LAMC1P11047 1609 aa13.33□□□□□ -0.28
CIITA-203ENST00000537380 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
CIITA-203ENST00000537380 PLEKHG1Q9ULL1 1385 aa13.32□□□□□ -0.28
CIITA-203ENST00000537380 UBAP1LF5GYI3 381 aa13.32□□□□□ -0.28
CIITA-203ENST00000537380 NEXMIFQ5QGS0 1516 aa13.32□□□□□ -0.28
CIITA-203ENST00000537380 TRPM1Q7Z4N2 1603 aa13.31□□□□□ -0.28
CIITA-203ENST00000537380 PPLO60437 1756 aa13.31□□□□□ -0.28
CIITA-203ENST00000537380 EIF4G2P78344 907 aaKnown RBP eCLIP13.31□□□□□ -0.28
CIITA-203ENST00000537380 DIP2AQ14689 1571 aa13.31□□□□□ -0.28
CIITA-203ENST00000537380 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
CIITA-203ENST00000537380 NWD1Q149M9 1564 aa13.3□□□□□ -0.28
CIITA-203ENST00000537380 VGFO15240 615 aaPredicted RBP13.3□□□□□ -0.28
CIITA-203ENST00000537380 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.3□□□□□ -0.28
CIITA-203ENST00000537380 SETBP1Q9Y6X0 1596 aa13.29□□□□□ -0.28
CIITA-203ENST00000537380 NRXN3Q9Y4C0 1643 aa13.29□□□□□ -0.28
CIITA-203ENST00000537380 HDGFP51858 240 aaKnown RBP13.29□□□□□ -0.28
CIITA-203ENST00000537380 KDM2AQ9Y2K7 1162 aa13.29□□□□□ -0.28
CIITA-203ENST00000537380 DISP3Q9P2K9 1392 aa13.29□□□□□ -0.28
CIITA-203ENST00000537380 TOM1O60784 492 aa13.28□□□□□ -0.28
CIITA-203ENST00000537380 CHGAP10645 457 aaKnown RBP13.28□□□□□ -0.28
CIITA-203ENST00000537380 CHD2O14647 1828 aaKnown RBP13.27□□□□□ -0.28
CIITA-203ENST00000537380 ADAMTS13Q76LX8 1427 aa13.27□□□□□ -0.29
CIITA-203ENST00000537380 ROCK2O75116 1388 aaKnown RBP13.26□□□□□ -0.29
CIITA-203ENST00000537380 PIK3C2GO75747 1445 aa13.26□□□□□ -0.29
CIITA-203ENST00000537380 XIRP1Q702N8 1843 aaKnown RBP13.26□□□□□ -0.29
CIITA-203ENST00000537380 LRRC7Q96NW7 1537 aa13.26□□□□□ -0.29
CIITA-203ENST00000537380 NKTRP30414 1462 aaKnown RBP13.25□□□□□ -0.29
CIITA-203ENST00000537380 ZNF326Q5BKZ1 582 aaKnown RBP13.25□□□□□ -0.29
CIITA-203ENST00000537380 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
CIITA-203ENST00000537380 SLC26A8Q96RN1 970 aa13.24□□□□□ -0.29
CIITA-203ENST00000537380 CARD11Q9BXL7 1154 aa13.24□□□□□ -0.29
CIITA-203ENST00000537380 SETD1AO15047 1707 aaKnown RBP13.24□□□□□ -0.29
CIITA-203ENST00000537380 USP47Q96K76 1375 aa13.23□□□□□ -0.29
CIITA-203ENST00000537380 PIK3R4Q99570 1358 aa13.23□□□□□ -0.29
CIITA-203ENST00000537380 ADGRF5Q8IZF2 1346 aa13.23□□□□□ -0.29
CIITA-203ENST00000537380 HSPA5P11021 654 aaKnown RBP13.23□□□□□ -0.29
CIITA-203ENST00000537380 PIP4K2BP78356 416 aa13.23□□□□□ -0.29
CIITA-203ENST00000537380 C14orf93Q9H972 538 aaKnown RBP13.23□□□□□ -0.29
CIITA-203ENST00000537380 TBX22Q9Y458 520 aa13.23□□□□□ -0.29
CIITA-203ENST00000537380 XRN1Q8IZH2 1706 aaKnown RBP13.22□□□□□ -0.29
CIITA-203ENST00000537380 ALKQ9UM73 1620 aa13.21□□□□□ -0.29
CIITA-203ENST00000537380 KCNA6P17658 529 aa13.21□□□□□ -0.29
CIITA-203ENST00000537380 NUTM2DQ5VT03 806 aaPredicted RBP13.21□□□□□ -0.29
CIITA-203ENST00000537380 BCANQ96GW7 911 aa13.21□□□□□ -0.29
CIITA-203ENST00000537380 NBPF1Q3BBV0 1214 aa13.19□□□□□ -0.3
CIITA-203ENST00000537380 PTPRUQ92729 1446 aa13.18□□□□□ -0.3
CIITA-203ENST00000537380 ADGRB1O14514 1584 aa13.18□□□□□ -0.3
CIITA-203ENST00000537380 EIF3AQ14152 1382 aaKnown RBP13.18□□□□□ -0.3
CIITA-203ENST00000537380 SBNO2Q9Y2G9 1366 aa13.17□□□□□ -0.3
CIITA-203ENST00000537380 CFAP70Q5T0N1 1121 aa13.16□□□□□ -0.3
CIITA-203ENST00000537380 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
CIITA-203ENST00000537380 METP08581 1390 aa13.16□□□□□ -0.3
CIITA-203ENST00000537380 TMEM94Q12767 1356 aa13.16□□□□□ -0.3
CIITA-203ENST00000537380 NCOA3Q9Y6Q9 1424 aa13.15□□□□□ -0.3
CIITA-203ENST00000537380 SENP3Q9H4L4 574 aaPredicted RBP13.15□□□□□ -0.3
CIITA-203ENST00000537380 ST20-MTHFSA0A0A6YYL1 179 aa13.14□□□□□ -0.31
CIITA-203ENST00000537380 CCDC7Q96M83 1385 aa13.13□□□□□ -0.31
CIITA-203ENST00000537380 ASXL1Q8IXJ9 1541 aa13.13□□□□□ -0.31
CIITA-203ENST00000537380 PROSER2Q86WR7 435 aaPredicted RBP13.12□□□□□ -0.31
CIITA-203ENST00000537380 TESK2Q96S53 571 aa13.12□□□□□ -0.31
CIITA-203ENST00000537380 PTCH1Q13635 1447 aa13.12□□□□□ -0.31
CIITA-203ENST00000537380 WASHC2AQ641Q2 1341 aa13.12□□□□□ -0.31
CIITA-203ENST00000537380 KNDC1Q76NI1 1749 aa13.11□□□□□ -0.31
CIITA-203ENST00000537380 SIRT1Q96EB6 747 aa13.11□□□□□ -0.31
CIITA-203ENST00000537380 PHF23Q9BUL5 403 aaPredicted RBP13.11□□□□□ -0.31
CIITA-203ENST00000537380 AMOTL2Q9Y2J4 779 aa13.11□□□□□ -0.31
CIITA-203ENST00000537380 DLC1Q96QB1 1528 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms