RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 TXNDC2Q86VQ3 553 aa7.7□□□□□ -1.18
USH1C-210ENST00000534556 IQSEC2Q5JU85 1478 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 NEXMIFQ5QGS0 1516 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 NWD1Q149M9 1564 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 FOXD1Q16676 465 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 SLC52A1Q9NWF4 448 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 RIMS2Q9UQ26 1411 aa7.69□□□□□ -1.18
USH1C-210ENST00000534556 CPS1P31327 1500 aa7.68□□□□□ -1.18
USH1C-210ENST00000534556 NUTM2DQ5VT03 806 aaPredicted RBP7.68□□□□□ -1.18
USH1C-210ENST00000534556 ADAMTS13Q76LX8 1427 aa7.68□□□□□ -1.18
USH1C-210ENST00000534556 SLC26A8Q96RN1 970 aa7.67□□□□□ -1.18
USH1C-210ENST00000534556 XRN1Q8IZH2 1706 aaKnown RBP7.66□□□□□ -1.18
USH1C-210ENST00000534556 PTPRUQ92729 1446 aa7.66□□□□□ -1.18
USH1C-210ENST00000534556 SETD5Q9C0A6 1442 aa7.66□□□□□ -1.18
USH1C-210ENST00000534556 CHGAP10645 457 aaKnown RBP7.65□□□□□ -1.18
USH1C-210ENST00000534556 TRIM52Q96A61 297 aa7.65□□□□□ -1.18
USH1C-210ENST00000534556 RBM33Q96EV2 1170 aaKnown RBP7.65□□□□□ -1.18
USH1C-210ENST00000534556 RAB3GAP2Q9H2M9 1393 aa7.65□□□□□ -1.18
USH1C-210ENST00000534556 STAG3Q9UJ98 1225 aa7.65□□□□□ -1.18
USH1C-210ENST00000534556 PLEKHG1Q9ULL1 1385 aa7.65□□□□□ -1.18
USH1C-210ENST00000534556 SETBP1Q9Y6X0 1596 aa7.65□□□□□ -1.18
USH1C-210ENST00000534556 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.64□□□□□ -1.19
USH1C-210ENST00000534556 SLC4A1APQ9BWU0 796 aaKnown RBP7.64□□□□□ -1.19
USH1C-210ENST00000534556 EID1Q9Y6B2 187 aa7.64□□□□□ -1.19
USH1C-210ENST00000534556 UBAP1LF5GYI3 381 aa7.63□□□□□ -1.19
USH1C-210ENST00000534556 ILDR2Q71H61 639 aa7.63□□□□□ -1.19
USH1C-210ENST00000534556 MPHOSPH9Q99550 1183 aa7.63□□□□□ -1.19
USH1C-210ENST00000534556 NALCNQ8IZF0 1738 aa7.63□□□□□ -1.19
USH1C-210ENST00000534556 DIP2AQ14689 1571 aa7.63□□□□□ -1.19
USH1C-210ENST00000534556 SPATA31E1Q6ZUB1 1445 aa7.62□□□□□ -1.19
USH1C-210ENST00000534556 ROBO1Q9Y6N7 1651 aa7.61□□□□□ -1.19
USH1C-210ENST00000534556 KCNA6P17658 529 aa7.61□□□□□ -1.19
USH1C-210ENST00000534556 ASXL1Q8IXJ9 1541 aa7.61□□□□□ -1.19
USH1C-210ENST00000534556 NKTRP30414 1462 aaKnown RBP7.61□□□□□ -1.19
USH1C-210ENST00000534556 METP08581 1390 aa7.6□□□□□ -1.19
USH1C-210ENST00000534556 TMEM94Q12767 1356 aa7.6□□□□□ -1.19
USH1C-210ENST00000534556 TBX22Q9Y458 520 aa7.6□□□□□ -1.19
USH1C-210ENST00000534556 RGPD8O14715 1765 aaPredicted RBP7.59□□□□□ -1.19
USH1C-210ENST00000534556 SOCS7O14512 581 aa7.59□□□□□ -1.19
USH1C-210ENST00000534556 DISP3Q9P2K9 1392 aa7.59□□□□□ -1.2
USH1C-210ENST00000534556 PPP1R15AO75807 674 aaPredicted RBP7.58□□□□□ -1.2
USH1C-210ENST00000534556 HSPA1LP34931 641 aa7.58□□□□□ -1.2
USH1C-210ENST00000534556 PIP4K2BP78356 416 aa7.58□□□□□ -1.2
USH1C-210ENST00000534556 ZNF326Q5BKZ1 582 aaKnown RBP7.58□□□□□ -1.2
USH1C-210ENST00000534556 PROSER2Q86WR7 435 aaPredicted RBP7.58□□□□□ -1.2
USH1C-210ENST00000534556 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.58□□□□□ -1.2
USH1C-210ENST00000534556 KNDC1Q76NI1 1749 aa7.58□□□□□ -1.2
USH1C-210ENST00000534556 ANKRD30BQ9BXX2 1392 aa7.58□□□□□ -1.2
USH1C-210ENST00000534556 ADGRF5Q8IZF2 1346 aa7.57□□□□□ -1.2
USH1C-210ENST00000534556 BCANQ96GW7 911 aa7.57□□□□□ -1.2
USH1C-210ENST00000534556 PHLPP1O60346 1717 aa7.56□□□□□ -1.2
USH1C-210ENST00000534556 CCDC144AA2RUR9 1427 aa7.56□□□□□ -1.2
USH1C-210ENST00000534556 RGL3Q3MIN7 710 aa7.56□□□□□ -1.2
USH1C-210ENST00000534556 AMOTL2Q9Y2J4 779 aa7.56□□□□□ -1.2
USH1C-210ENST00000534556 PIK3R4Q99570 1358 aa7.56□□□□□ -1.2
USH1C-210ENST00000534556 NRXN1Q9ULB1 1477 aa7.55□□□□□ -1.2
USH1C-210ENST00000534556 TOM1O60784 492 aa7.55□□□□□ -1.2
USH1C-210ENST00000534556 COL16A1Q07092 1604 aaPredicted RBP7.55□□□□□ -1.2
USH1C-210ENST00000534556 NHSL1Q5SYE7 1610 aa7.55□□□□□ -1.2
USH1C-210ENST00000534556 MED1Q15648 1581 aaPredicted RBP7.54□□□□□ -1.2
USH1C-210ENST00000534556 SCAF1Q9H7N4 1312 aaKnown RBP7.54□□□□□ -1.2
USH1C-210ENST00000534556 PIK3C2GO75747 1445 aa7.54□□□□□ -1.2
USH1C-210ENST00000534556 HRCP23327 699 aa7.54□□□□□ -1.2
USH1C-210ENST00000534556 HDGFP51858 240 aaKnown RBP7.54□□□□□ -1.2
USH1C-210ENST00000534556 ROBO2Q9HCK4 1378 aa7.54□□□□□ -1.2
USH1C-210ENST00000534556 RPGRIP1LQ68CZ1 1315 aa7.53□□□□□ -1.2
USH1C-210ENST00000534556 FAM135BQ49AJ0 1406 aa7.53□□□□□ -1.2
USH1C-210ENST00000534556 PRAG1Q86YV5 1406 aa7.53□□□□□ -1.2
USH1C-210ENST00000534556 DHX57Q6P158 1386 aaKnown RBP7.53□□□□□ -1.2
USH1C-210ENST00000534556 LAMC1P11047 1609 aa7.52□□□□□ -1.2
USH1C-210ENST00000534556 ADGRB1O14514 1584 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 MYOM2P54296 1465 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 VGFO15240 615 aaPredicted RBP7.52□□□□□ -1.21
USH1C-210ENST00000534556 TMEM132EQ6IEE7 984 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 ARHGEF28Q8N1W1 1705 aaKnown RBP7.52□□□□□ -1.21
USH1C-210ENST00000534556 FMN2Q9NZ56 1722 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 MST1RQ04912 1400 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 NCOA3Q9Y6Q9 1424 aa7.52□□□□□ -1.21
USH1C-210ENST00000534556 MSH6P52701 1360 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 PLEKHH1Q9ULM0 1364 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 SLAIN2Q9P270 581 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 AHDC1Q5TGY3 1603 aaPredicted RBP7.51□□□□□ -1.21
USH1C-210ENST00000534556 PTCH1Q13635 1447 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 ADGRL3Q9HAR2 1447 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 SHPRHQ149N8 1683 aa7.51□□□□□ -1.21
USH1C-210ENST00000534556 USP32Q8NFA0 1604 aa7.5□□□□□ -1.21
USH1C-210ENST00000534556 CFAP70Q5T0N1 1121 aa7.5□□□□□ -1.21
USH1C-210ENST00000534556 TECPR2O15040 1411 aa7.5□□□□□ -1.21
USH1C-210ENST00000534556 KIAA1210Q9ULL0 1709 aa7.49□□□□□ -1.21
USH1C-210ENST00000534556 WAPLQ7Z5K2 1190 aa7.49□□□□□ -1.21
USH1C-210ENST00000534556 DDX17Q92841 729 aaKnown RBP7.49□□□□□ -1.21
USH1C-210ENST00000534556 C19orf44Q9H6X5 657 aa7.49□□□□□ -1.21
USH1C-210ENST00000534556 C14orf93Q9H972 538 aaKnown RBP7.49□□□□□ -1.21
USH1C-210ENST00000534556 YTHDC2Q9H6S0 1430 aaKnown RBP7.49□□□□□ -1.21
USH1C-210ENST00000534556 LRPPRCP42704 1394 aaKnown RBP7.48□□□□□ -1.21
USH1C-210ENST00000534556 DCCP43146 1447 aa7.48□□□□□ -1.21
USH1C-210ENST00000534556 CDC42BPGQ6DT37 1551 aa7.48□□□□□ -1.21
USH1C-210ENST00000534556 BRINP3Q76B58 766 aa7.48□□□□□ -1.21
USH1C-210ENST00000534556 STK26Q9P289 416 aa7.48□□□□□ -1.21
USH1C-210ENST00000534556 ABCC11Q96J66 1382 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms