RNA–Protein interactions for RNA: ENST00000533438.1

CLCF1-202, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CLCF1, Length 967 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-202ENST00000533438 ITGAEP38570 1179 aa17.3■□□□□ 0.36
CLCF1-202ENST00000533438 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
CLCF1-202ENST00000533438 RGS17Q9UGC6 210 aaPredicted RBP17.29■□□□□ 0.36
CLCF1-202ENST00000533438 NUP155O75694 1391 aa17.28■□□□□ 0.36
CLCF1-202ENST00000533438 FAM135BQ49AJ0 1406 aa17.27■□□□□ 0.35
CLCF1-202ENST00000533438 NWD1Q149M9 1564 aa17.27■□□□□ 0.35
CLCF1-202ENST00000533438 PHF23Q9BUL5 403 aaPredicted RBP17.26■□□□□ 0.35
CLCF1-202ENST00000533438 RIMS2Q9UQ26 1411 aa17.25■□□□□ 0.35
CLCF1-202ENST00000533438 SPHKAPQ2M3C7 1700 aa17.24■□□□□ 0.35
CLCF1-202ENST00000533438 SLC26A8Q96RN1 970 aa17.24■□□□□ 0.35
CLCF1-202ENST00000533438 PLEKHG1Q9ULL1 1385 aa17.24■□□□□ 0.35
CLCF1-202ENST00000533438 CHD2O14647 1828 aaKnown RBP17.24■□□□□ 0.35
CLCF1-202ENST00000533438 KCNA6P17658 529 aa17.23■□□□□ 0.35
CLCF1-202ENST00000533438 NKTRP30414 1462 aaKnown RBP17.22■□□□□ 0.35
CLCF1-202ENST00000533438 NAIPQ13075 1403 aa17.21■□□□□ 0.35
CLCF1-202ENST00000533438 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
CLCF1-202ENST00000533438 TMEM94Q12767 1356 aa17.19■□□□□ 0.34
CLCF1-202ENST00000533438 CHGAP10645 457 aaKnown RBP17.18■□□□□ 0.34
CLCF1-202ENST00000533438 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.18■□□□□ 0.34
CLCF1-202ENST00000533438 PPP1R15AO75807 674 aaPredicted RBP17.17■□□□□ 0.34
CLCF1-202ENST00000533438 DIP2AQ14689 1571 aa17.17■□□□□ 0.34
CLCF1-202ENST00000533438 ADAMTS13Q76LX8 1427 aa17.17■□□□□ 0.34
CLCF1-202ENST00000533438 HFM1A2PYH4 1435 aa17.16■□□□□ 0.34
CLCF1-202ENST00000533438 BCANQ96GW7 911 aa17.16■□□□□ 0.34
CLCF1-202ENST00000533438 CLTCL1P53675 1640 aa17.15■□□□□ 0.34
CLCF1-202ENST00000533438 PROSER2Q86WR7 435 aaPredicted RBP17.15■□□□□ 0.34
CLCF1-202ENST00000533438 TBX22Q9Y458 520 aa17.15■□□□□ 0.34
CLCF1-202ENST00000533438 SENP3Q9H4L4 574 aaPredicted RBP17.14■□□□□ 0.33
CLCF1-202ENST00000533438 TRPM2O94759 1503 aa17.14■□□□□ 0.33
CLCF1-202ENST00000533438 NRXN3Q9Y4C0 1643 aa17.13■□□□□ 0.33
CLCF1-202ENST00000533438 ROBO1Q9Y6N7 1651 aa17.13■□□□□ 0.33
CLCF1-202ENST00000533438 NUTM2DQ5VT03 806 aaPredicted RBP17.12■□□□□ 0.33
CLCF1-202ENST00000533438 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
CLCF1-202ENST00000533438 KIF1BO60333 1816 aa17.12■□□□□ 0.33
CLCF1-202ENST00000533438 POTEAQ6S8J7 498 aa17.11■□□□□ 0.33
CLCF1-202ENST00000533438 PIK3R4Q99570 1358 aa17.11■□□□□ 0.33
CLCF1-202ENST00000533438 SETBP1Q9Y6X0 1596 aa17.11■□□□□ 0.33
CLCF1-202ENST00000533438 MSH6P52701 1360 aa17.09■□□□□ 0.33
CLCF1-202ENST00000533438 NCOA3Q9Y6Q9 1424 aa17.09■□□□□ 0.33
CLCF1-202ENST00000533438 NEXMIFQ5QGS0 1516 aa17.08■□□□□ 0.32
CLCF1-202ENST00000533438 SLAIN2Q9P270 581 aa17.08■□□□□ 0.32
CLCF1-202ENST00000533438 PTPRUQ92729 1446 aa17.07■□□□□ 0.32
CLCF1-202ENST00000533438 XRN1Q8IZH2 1706 aaKnown RBP17.07■□□□□ 0.32
CLCF1-202ENST00000533438 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.06■□□□□ 0.32
CLCF1-202ENST00000533438 ZNF326Q5BKZ1 582 aaKnown RBP17.04■□□□□ 0.32
CLCF1-202ENST00000533438 TRIM52Q96A61 297 aa17.03■□□□□ 0.32
CLCF1-202ENST00000533438 AMOTL2Q9Y2J4 779 aa17.02■□□□□ 0.32
CLCF1-202ENST00000533438 SETD1AO15047 1707 aaKnown RBP17.01■□□□□ 0.31
CLCF1-202ENST00000533438 PHLPP1O60346 1717 aa17.01■□□□□ 0.31
CLCF1-202ENST00000533438 SLC4A1APQ9BWU0 796 aaKnown RBP17.01■□□□□ 0.31
CLCF1-202ENST00000533438 JCADQ9P266 1359 aa17.01■□□□□ 0.31
CLCF1-202ENST00000533438 PPLO60437 1756 aa17■□□□□ 0.31
CLCF1-202ENST00000533438 METP08581 1390 aa17■□□□□ 0.31
CLCF1-202ENST00000533438 C19orf44Q9H6X5 657 aa16.98■□□□□ 0.31
CLCF1-202ENST00000533438 DCCP43146 1447 aa16.97■□□□□ 0.31
CLCF1-202ENST00000533438 COL16A1Q07092 1604 aaPredicted RBP16.97■□□□□ 0.31
CLCF1-202ENST00000533438 SPATA31A6Q5VVP1 1343 aa16.96■□□□□ 0.31
CLCF1-202ENST00000533438 C14orf37Q86TY3 774 aa16.96■□□□□ 0.31
CLCF1-202ENST00000533438 CADPS2Q86UW7 1296 aa16.96■□□□□ 0.31
CLCF1-202ENST00000533438 AHDC1Q5TGY3 1603 aaPredicted RBP16.96■□□□□ 0.3
CLCF1-202ENST00000533438 RPGRIP1LQ68CZ1 1315 aa16.95■□□□□ 0.3
CLCF1-202ENST00000533438 NALCNQ8IZF0 1738 aa16.94■□□□□ 0.3
CLCF1-202ENST00000533438 VGFO15240 615 aaPredicted RBP16.93■□□□□ 0.3
CLCF1-202ENST00000533438 ATF3P18847 181 aa16.93■□□□□ 0.3
CLCF1-202ENST00000533438 FOXD1Q16676 465 aa16.93■□□□□ 0.3
CLCF1-202ENST00000533438 IFT172Q9UG01 1749 aa16.93■□□□□ 0.3
CLCF1-202ENST00000533438 PRAG1Q86YV5 1406 aa16.91■□□□□ 0.3
CLCF1-202ENST00000533438 ADGRL3Q9HAR2 1447 aa16.91■□□□□ 0.3
CLCF1-202ENST00000533438 MPHOSPH9Q99550 1183 aa16.91■□□□□ 0.3
CLCF1-202ENST00000533438 CCDC144AA2RUR9 1427 aa16.9■□□□□ 0.3
CLCF1-202ENST00000533438 MST1RQ04912 1400 aa16.9■□□□□ 0.3
CLCF1-202ENST00000533438 PTCH1Q13635 1447 aa16.9■□□□□ 0.3
CLCF1-202ENST00000533438 ZNF772Q68DY9 489 aaPredicted RBP16.9■□□□□ 0.3
CLCF1-202ENST00000533438 NHSL1Q5SYE7 1610 aa16.89■□□□□ 0.29
CLCF1-202ENST00000533438 SPATA31E1Q6ZUB1 1445 aa16.89■□□□□ 0.29
CLCF1-202ENST00000533438 SHPRHQ149N8 1683 aa16.89■□□□□ 0.29
CLCF1-202ENST00000533438 SETD5Q9C0A6 1442 aa16.88■□□□□ 0.29
CLCF1-202ENST00000533438 ASXL1Q8IXJ9 1541 aa16.88■□□□□ 0.29
CLCF1-202ENST00000533438 BRINP3Q76B58 766 aa16.88■□□□□ 0.29
CLCF1-202ENST00000533438 UPF1Q92900 1129 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLCF1-202ENST00000533438 LRP6O75581 1613 aa16.87■□□□□ 0.29
CLCF1-202ENST00000533438 ACIN1Q9UKV3 1341 aaKnown RBP16.87■□□□□ 0.29
CLCF1-202ENST00000533438 ROBO2Q9HCK4 1378 aa16.85■□□□□ 0.29
CLCF1-202ENST00000533438 ADGRF5Q8IZF2 1346 aa16.83■□□□□ 0.28
CLCF1-202ENST00000533438 ANKRD30BQ9BXX2 1392 aa16.83■□□□□ 0.28
CLCF1-202ENST00000533438 CDK12Q9NYV4 1490 aaPredicted RBP16.83■□□□□ 0.28
CLCF1-202ENST00000533438 LAMC1P11047 1609 aa16.82■□□□□ 0.28
CLCF1-202ENST00000533438 RAB3GAP2Q9H2M9 1393 aa16.82■□□□□ 0.28
CLCF1-202ENST00000533438 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
CLCF1-202ENST00000533438 C1orf167Q5SNV9 1468 aa16.81■□□□□ 0.28
CLCF1-202ENST00000533438 RXRBP28702 533 aa16.81■□□□□ 0.28
CLCF1-202ENST00000533438 KNDC1Q76NI1 1749 aa16.81■□□□□ 0.28
CLCF1-202ENST00000533438 PIK3C2GO75747 1445 aa16.8■□□□□ 0.28
CLCF1-202ENST00000533438 TECPR2O15040 1411 aa16.79■□□□□ 0.28
CLCF1-202ENST00000533438 CDC42BPGQ6DT37 1551 aa16.78■□□□□ 0.28
CLCF1-202ENST00000533438 LRRC59Q96AG4 307 aaKnown RBP16.78■□□□□ 0.28
CLCF1-202ENST00000533438 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.28
CLCF1-202ENST00000533438 NRXN1Q9ULB1 1477 aa16.77■□□□□ 0.28
CLCF1-202ENST00000533438 MYOM2P54296 1465 aa16.76■□□□□ 0.27
CLCF1-202ENST00000533438 DDX17Q92841 729 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms