RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 IQSEC2Q5JU85 1478 aa30.41■■■□□ 2.46
CCS-208ENST00000533244 FOXD1Q16676 465 aa30.39■■■□□ 2.46
CCS-208ENST00000533244 KIF1BO60333 1816 aa30.39■■■□□ 2.46
CCS-208ENST00000533244 PLEKHG1Q9ULL1 1385 aa30.39■■■□□ 2.46
CCS-208ENST00000533244 CPS1P31327 1500 aa30.39■■■□□ 2.45
CCS-208ENST00000533244 HDGFP51858 240 aaKnown RBP30.39■■■□□ 2.45
CCS-208ENST00000533244 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.38■■■□□ 2.45
CCS-208ENST00000533244 STRCP1A6NGW2 1772 aa30.35■■■□□ 2.45
CCS-208ENST00000533244 FBXO41Q8TF61 875 aa30.35■■■□□ 2.45
CCS-208ENST00000533244 ILDR1Q86SU0 546 aaPredicted RBP30.32■■■□□ 2.44
CCS-208ENST00000533244 NEXMIFQ5QGS0 1516 aa30.32■■■□□ 2.44
CCS-208ENST00000533244 PPP1R15AO75807 674 aaPredicted RBP30.31■■■□□ 2.44
CCS-208ENST00000533244 CCDC144AA2RUR9 1427 aa30.31■■■□□ 2.44
CCS-208ENST00000533244 SLC26A8Q96RN1 970 aa30.28■■■□□ 2.44
CCS-208ENST00000533244 ADAMTS13Q76LX8 1427 aa30.27■■■□□ 2.44
CCS-208ENST00000533244 ZNF326Q5BKZ1 582 aaKnown RBP30.27■■■□□ 2.44
CCS-208ENST00000533244 NUTM2DQ5VT03 806 aaPredicted RBP30.27■■■□□ 2.44
CCS-208ENST00000533244 DIP2AQ14689 1571 aa30.25■■■□□ 2.43
CCS-208ENST00000533244 NWD1Q149M9 1564 aa30.24■■■□□ 2.43
CCS-208ENST00000533244 SETBP1Q9Y6X0 1596 aa30.24■■■□□ 2.43
CCS-208ENST00000533244 SPATA31E1Q6ZUB1 1445 aa30.24■■■□□ 2.43
CCS-208ENST00000533244 NRXN3Q9Y4C0 1643 aa30.24■■■□□ 2.43
CCS-208ENST00000533244 LRRC7Q96NW7 1537 aa30.23■■■□□ 2.43
CCS-208ENST00000533244 TBX22Q9Y458 520 aa30.22■■■□□ 2.43
CCS-208ENST00000533244 BCANQ96GW7 911 aa30.21■■■□□ 2.43
CCS-208ENST00000533244 RPGRIP1LQ68CZ1 1315 aa30.2■■■□□ 2.43
CCS-208ENST00000533244 KCNA6P17658 529 aa30.2■■■□□ 2.42
CCS-208ENST00000533244 PPLO60437 1756 aa30.19■■■□□ 2.42
CCS-208ENST00000533244 ANKRD30BQ9BXX2 1392 aa30.19■■■□□ 2.42
CCS-208ENST00000533244 CHD2O14647 1828 aaKnown RBP30.18■■■□□ 2.42
CCS-208ENST00000533244 SENP3Q9H4L4 574 aaPredicted RBP30.17■■■□□ 2.42
CCS-208ENST00000533244 PIK3R4Q99570 1358 aa30.16■■■□□ 2.42
CCS-208ENST00000533244 NKTRP30414 1462 aaKnown RBP30.16■■■□□ 2.42
CCS-208ENST00000533244 IFT172Q9UG01 1749 aa30.14■■■□□ 2.42
CCS-208ENST00000533244 XIRP1Q702N8 1843 aaKnown RBP30.13■■■□□ 2.41
CCS-208ENST00000533244 VGFO15240 615 aaPredicted RBP30.12■■■□□ 2.41
CCS-208ENST00000533244 TRIM26Q12899 539 aaPredicted RBP30.12■■■□□ 2.41
CCS-208ENST00000533244 SETD1AO15047 1707 aaKnown RBP30.07■■■□□ 2.4
CCS-208ENST00000533244 RGL3Q3MIN7 710 aa30.06■■■□□ 2.4
CCS-208ENST00000533244 PTPRUQ92729 1446 aa30.06■■■□□ 2.4
CCS-208ENST00000533244 ALKQ9UM73 1620 aa30.06■■■□□ 2.4
CCS-208ENST00000533244 TMEM94Q12767 1356 aa30.05■■■□□ 2.4
CCS-208ENST00000533244 XRN1Q8IZH2 1706 aaKnown RBP30.04■■■□□ 2.4
CCS-208ENST00000533244 UBAP1LF5GYI3 381 aa30.04■■■□□ 2.4
CCS-208ENST00000533244 METP08581 1390 aa30.03■■■□□ 2.4
CCS-208ENST00000533244 PROSER2Q86WR7 435 aaPredicted RBP30.01■■■□□ 2.39
CCS-208ENST00000533244 ADGRF5Q8IZF2 1346 aa30■■■□□ 2.39
CCS-208ENST00000533244 MYOM2P54296 1465 aa29.99■■■□□ 2.39
CCS-208ENST00000533244 TOM1O60784 492 aa29.98■■■□□ 2.39
CCS-208ENST00000533244 AMOTL2Q9Y2J4 779 aa29.98■■■□□ 2.39
CCS-208ENST00000533244 PIK3C2GO75747 1445 aa29.97■■■□□ 2.39
CCS-208ENST00000533244 NCOA3Q9Y6Q9 1424 aa29.97■■■□□ 2.39
CCS-208ENST00000533244 NRXN1Q9ULB1 1477 aa29.97■■■□□ 2.39
CCS-208ENST00000533244 PRAG1Q86YV5 1406 aa29.94■■■□□ 2.38
CCS-208ENST00000533244 RBM33Q96EV2 1170 aaKnown RBP29.94■■■□□ 2.38
CCS-208ENST00000533244 ASXL1Q8IXJ9 1541 aa29.88■■■□□ 2.37
CCS-208ENST00000533244 DHX57Q6P158 1386 aaKnown RBP29.88■■■□□ 2.37
CCS-208ENST00000533244 PTCH1Q13635 1447 aa29.87■■■□□ 2.37
CCS-208ENST00000533244 MSH6P52701 1360 aa29.87■■■□□ 2.37
CCS-208ENST00000533244 LAMC1P11047 1609 aa29.85■■■□□ 2.37
CCS-208ENST00000533244 PIP4K2BP78356 416 aa29.84■■■□□ 2.37
CCS-208ENST00000533244 STAC3Q96MF2 364 aa29.83■■■□□ 2.37
CCS-208ENST00000533244 C14orf93Q9H972 538 aaKnown RBP29.81■■■□□ 2.36
CCS-208ENST00000533244 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.81■■■□□ 2.36
CCS-208ENST00000533244 ROBO2Q9HCK4 1378 aa29.8■■■□□ 2.36
CCS-208ENST00000533244 TECPR2O15040 1411 aa29.8■■■□□ 2.36
CCS-208ENST00000533244 DCAF11Q8TEB1 546 aa29.79■■■□□ 2.36
CCS-208ENST00000533244 SCAF1Q9H7N4 1312 aaKnown RBP29.79■■■□□ 2.36
CCS-208ENST00000533244 C19orf44Q9H6X5 657 aa29.79■■■□□ 2.36
CCS-208ENST00000533244 DCCP43146 1447 aa29.78■■■□□ 2.36
CCS-208ENST00000533244 KNDC1Q76NI1 1749 aa29.78■■■□□ 2.36
CCS-208ENST00000533244 LRPPRCP42704 1394 aaKnown RBP29.78■■■□□ 2.36
CCS-208ENST00000533244 FAM135BQ49AJ0 1406 aa29.76■■■□□ 2.36
CCS-208ENST00000533244 ADGRL3Q9HAR2 1447 aa29.76■■■□□ 2.36
CCS-208ENST00000533244 NALCNQ8IZF0 1738 aa29.76■■■□□ 2.35
CCS-208ENST00000533244 ABCC11Q96J66 1382 aa29.75■■■□□ 2.35
CCS-208ENST00000533244 CFAP70Q5T0N1 1121 aa29.75■■■□□ 2.35
CCS-208ENST00000533244 C14orf37Q86TY3 774 aa29.75■■■□□ 2.35
CCS-208ENST00000533244 TMEM132EQ6IEE7 984 aa29.74■■■□□ 2.35
CCS-208ENST00000533244 YTHDC2Q9H6S0 1430 aaKnown RBP29.74■■■□□ 2.35
CCS-208ENST00000533244 KDM2AQ9Y2K7 1162 aa29.73■■■□□ 2.35
CCS-208ENST00000533244 ADGRB1O14514 1584 aa29.73■■■□□ 2.35
CCS-208ENST00000533244 CADPS2Q86UW7 1296 aa29.71■■■□□ 2.35
CCS-208ENST00000533244 ROBO1Q9Y6N7 1651 aa29.71■■■□□ 2.35
CCS-208ENST00000533244 HSPA1LP34931 641 aa29.71■■■□□ 2.35
CCS-208ENST00000533244 SLAIN2Q9P270 581 aa29.71■■■□□ 2.35
CCS-208ENST00000533244 SIN3AQ96ST3 1273 aa29.7■■■□□ 2.34
CCS-208ENST00000533244 ATF3P18847 181 aa29.68■■■□□ 2.34
CCS-208ENST00000533244 STK26Q9P289 416 aa29.66■■■□□ 2.34
CCS-208ENST00000533244 MST1RQ04912 1400 aa29.64■■■□□ 2.34
CCS-208ENST00000533244 SIRT1Q96EB6 747 aa29.64■■■□□ 2.34
CCS-208ENST00000533244 KIAA1210Q9ULL0 1709 aa29.63■■■□□ 2.33
CCS-208ENST00000533244 DLC1Q96QB1 1528 aa29.63■■■□□ 2.33
CCS-208ENST00000533244 PLEKHH1Q9ULM0 1364 aa29.61■■■□□ 2.33
CCS-208ENST00000533244 L3MBTL2Q969R5 705 aa29.61■■■□□ 2.33
CCS-208ENST00000533244 CDC42BPGQ6DT37 1551 aa29.6■■■□□ 2.33
CCS-208ENST00000533244 WAPLQ7Z5K2 1190 aa29.6■■■□□ 2.33
CCS-208ENST00000533244 PCGF6Q9BYE7 350 aa29.59■■■□□ 2.33
CCS-208ENST00000533244 NEUROD1Q13562 356 aa29.58■■■□□ 2.33
CCS-208ENST00000533244 AHDC1Q5TGY3 1603 aaPredicted RBP29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms