RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SENP3Q9H4L4 574 aaPredicted RBP16.13■□□□□ 0.17
CD44-227ENST00000528086 TRPM2O94759 1503 aa16.13■□□□□ 0.17
CD44-227ENST00000528086 PLEKHG1Q9ULL1 1385 aa16.12■□□□□ 0.17
CD44-227ENST00000528086 ADAMTS13Q76LX8 1427 aa16.11■□□□□ 0.17
CD44-227ENST00000528086 UBAP1LF5GYI3 381 aa16.11■□□□□ 0.17
CD44-227ENST00000528086 NUTM2DQ5VT03 806 aaPredicted RBP16.11■□□□□ 0.17
CD44-227ENST00000528086 NRXN3Q9Y4C0 1643 aa16.11■□□□□ 0.17
CD44-227ENST00000528086 CHD2O14647 1828 aaKnown RBP16.1■□□□□ 0.17
CD44-227ENST00000528086 NWD1Q149M9 1564 aa16.1■□□□□ 0.17
CD44-227ENST00000528086 CHGAP10645 457 aaKnown RBP16.09■□□□□ 0.17
CD44-227ENST00000528086 FOXD1Q16676 465 aa16.08■□□□□ 0.16
CD44-227ENST00000528086 TRIM52Q96A61 297 aa16.08■□□□□ 0.16
CD44-227ENST00000528086 NEXMIFQ5QGS0 1516 aa16.07■□□□□ 0.16
CD44-227ENST00000528086 KCNA6P17658 529 aa16.06■□□□□ 0.16
CD44-227ENST00000528086 SLC4A1APQ9BWU0 796 aaKnown RBP16.06■□□□□ 0.16
CD44-227ENST00000528086 KIF1BO60333 1816 aa16.05■□□□□ 0.16
CD44-227ENST00000528086 RBM33Q96EV2 1170 aaKnown RBP16.05■□□□□ 0.16
CD44-227ENST00000528086 PTPRUQ92729 1446 aa16.04■□□□□ 0.16
CD44-227ENST00000528086 TBX22Q9Y458 520 aa16.04■□□□□ 0.16
CD44-227ENST00000528086 SETD5Q9C0A6 1442 aa16.03■□□□□ 0.16
CD44-227ENST00000528086 SETBP1Q9Y6X0 1596 aa16.03■□□□□ 0.16
CD44-227ENST00000528086 TMEM94Q12767 1356 aa16.02■□□□□ 0.16
CD44-227ENST00000528086 MPHOSPH9Q99550 1183 aa16.02■□□□□ 0.16
CD44-227ENST00000528086 RAB3GAP2Q9H2M9 1393 aa16.01■□□□□ 0.15
CD44-227ENST00000528086 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.01■□□□□ 0.15
CD44-227ENST00000528086 SETD1AO15047 1707 aaKnown RBP16.01■□□□□ 0.15
CD44-227ENST00000528086 NKTRP30414 1462 aaKnown RBP16.01■□□□□ 0.15
CD44-227ENST00000528086 DIP2AQ14689 1571 aa16■□□□□ 0.15
CD44-227ENST00000528086 PPP1R15AO75807 674 aaPredicted RBP16■□□□□ 0.15
CD44-227ENST00000528086 PIP4K2BP78356 416 aa16■□□□□ 0.15
CD44-227ENST00000528086 HSPA1LP34931 641 aa15.99■□□□□ 0.15
CD44-227ENST00000528086 PPLO60437 1756 aa15.99■□□□□ 0.15
CD44-227ENST00000528086 TOM1O60784 492 aa15.98■□□□□ 0.15
CD44-227ENST00000528086 HDGFP51858 240 aaKnown RBP15.98■□□□□ 0.15
CD44-227ENST00000528086 SPATA31E1Q6ZUB1 1445 aa15.98■□□□□ 0.15
CD44-227ENST00000528086 XRN1Q8IZH2 1706 aaKnown RBP15.98■□□□□ 0.15
CD44-227ENST00000528086 METP08581 1390 aa15.98■□□□□ 0.15
CD44-227ENST00000528086 PROSER2Q86WR7 435 aaPredicted RBP15.97■□□□□ 0.15
CD44-227ENST00000528086 BCANQ96GW7 911 aa15.97■□□□□ 0.15
CD44-227ENST00000528086 ZNF326Q5BKZ1 582 aaKnown RBP15.96■□□□□ 0.15
CD44-227ENST00000528086 PIK3R4Q99570 1358 aa15.96■□□□□ 0.15
CD44-227ENST00000528086 IFT172Q9UG01 1749 aa15.96■□□□□ 0.15
CD44-227ENST00000528086 SCAF1Q9H7N4 1312 aaKnown RBP15.93■□□□□ 0.14
CD44-227ENST00000528086 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.92■□□□□ 0.14
CD44-227ENST00000528086 AMOTL2Q9Y2J4 779 aa15.92■□□□□ 0.14
CD44-227ENST00000528086 ADGRF5Q8IZF2 1346 aa15.91■□□□□ 0.14
CD44-227ENST00000528086 ROBO1Q9Y6N7 1651 aa15.9■□□□□ 0.14
CD44-227ENST00000528086 CCDC144AA2RUR9 1427 aa15.9■□□□□ 0.14
CD44-227ENST00000528086 FAM135BQ49AJ0 1406 aa15.9■□□□□ 0.14
CD44-227ENST00000528086 RPGRIP1LQ68CZ1 1315 aa15.89■□□□□ 0.13
CD44-227ENST00000528086 ANKRD30BQ9BXX2 1392 aa15.88■□□□□ 0.13
CD44-227ENST00000528086 NCOA3Q9Y6Q9 1424 aa15.88■□□□□ 0.13
CD44-227ENST00000528086 ASXL1Q8IXJ9 1541 aa15.88■□□□□ 0.13
CD44-227ENST00000528086 RGL3Q3MIN7 710 aa15.87■□□□□ 0.13
CD44-227ENST00000528086 VGFO15240 615 aaPredicted RBP15.86■□□□□ 0.13
CD44-227ENST00000528086 HRCP23327 699 aa15.86■□□□□ 0.13
CD44-227ENST00000528086 MSH6P52701 1360 aa15.86■□□□□ 0.13
CD44-227ENST00000528086 PRAG1Q86YV5 1406 aa15.85■□□□□ 0.13
CD44-227ENST00000528086 NALCNQ8IZF0 1738 aa15.85■□□□□ 0.13
CD44-227ENST00000528086 ILDR2Q71H61 639 aa15.85■□□□□ 0.13
CD44-227ENST00000528086 ROBO2Q9HCK4 1378 aa15.85■□□□□ 0.13
CD44-227ENST00000528086 SLAIN2Q9P270 581 aa15.84■□□□□ 0.13
CD44-227ENST00000528086 NRXN1Q9ULB1 1477 aa15.84■□□□□ 0.13
CD44-227ENST00000528086 MED1Q15648 1581 aaPredicted RBP15.83■□□□□ 0.13
CD44-227ENST00000528086 C19orf44Q9H6X5 657 aa15.83■□□□□ 0.12
CD44-227ENST00000528086 DISP3Q9P2K9 1392 aa15.83■□□□□ 0.12
CD44-227ENST00000528086 PIK3C2GO75747 1445 aa15.83■□□□□ 0.12
CD44-227ENST00000528086 ACIN1Q9UKV3 1341 aaKnown RBP15.82■□□□□ 0.12
CD44-227ENST00000528086 PTCH1Q13635 1447 aa15.8■□□□□ 0.12
CD44-227ENST00000528086 COL16A1Q07092 1604 aaPredicted RBP15.79■□□□□ 0.12
CD44-227ENST00000528086 MST1RQ04912 1400 aa15.79■□□□□ 0.12
CD44-227ENST00000528086 ADGRL3Q9HAR2 1447 aa15.79■□□□□ 0.12
CD44-227ENST00000528086 TMEM132EQ6IEE7 984 aa15.78■□□□□ 0.12
CD44-227ENST00000528086 MYOM2P54296 1465 aa15.78■□□□□ 0.12
CD44-227ENST00000528086 DCCP43146 1447 aa15.77■□□□□ 0.12
CD44-227ENST00000528086 PHLPP1O60346 1717 aa15.77■□□□□ 0.12
CD44-227ENST00000528086 TECPR2O15040 1411 aa15.77■□□□□ 0.11
CD44-227ENST00000528086 DHX57Q6P158 1386 aaKnown RBP15.76■□□□□ 0.11
CD44-227ENST00000528086 BRINP3Q76B58 766 aa15.76■□□□□ 0.11
CD44-227ENST00000528086 C14orf37Q86TY3 774 aa15.76■□□□□ 0.11
CD44-227ENST00000528086 CADPS2Q86UW7 1296 aa15.76■□□□□ 0.11
CD44-227ENST00000528086 C14orf93Q9H972 538 aaKnown RBP15.76■□□□□ 0.11
CD44-227ENST00000528086 KNDC1Q76NI1 1749 aa15.76■□□□□ 0.11
CD44-227ENST00000528086 AHDC1Q5TGY3 1603 aaPredicted RBP15.76■□□□□ 0.11
CD44-227ENST00000528086 PLEKHH1Q9ULM0 1364 aa15.75■□□□□ 0.11
CD44-227ENST00000528086 LRPPRCP42704 1394 aaKnown RBP15.75■□□□□ 0.11
CD44-227ENST00000528086 CFAP70Q5T0N1 1121 aa15.74■□□□□ 0.11
CD44-227ENST00000528086 NHSL1Q5SYE7 1610 aa15.73■□□□□ 0.11
CD44-227ENST00000528086 ATF3P18847 181 aa15.73■□□□□ 0.11
CD44-227ENST00000528086 WAPLQ7Z5K2 1190 aa15.73■□□□□ 0.11
CD44-227ENST00000528086 ADGRB1O14514 1584 aa15.73■□□□□ 0.11
CD44-227ENST00000528086 ABCC11Q96J66 1382 aa15.73■□□□□ 0.11
CD44-227ENST00000528086 YTHDC2Q9H6S0 1430 aaKnown RBP15.72■□□□□ 0.11
CD44-227ENST00000528086 RGS17Q9UGC6 210 aaPredicted RBP15.72■□□□□ 0.11
CD44-227ENST00000528086 STK26Q9P289 416 aa15.71■□□□□ 0.11
CD44-227ENST00000528086 C1orf167Q5SNV9 1468 aa15.71■□□□□ 0.1
CD44-227ENST00000528086 LAMC1P11047 1609 aa15.7■□□□□ 0.1
CD44-227ENST00000528086 DDX17Q92841 729 aaKnown RBP15.7■□□□□ 0.1
CD44-227ENST00000528086 CDC42BPGQ6DT37 1551 aa15.68■□□□□ 0.1
CD44-227ENST00000528086 LRP6O75581 1613 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms