RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, humanhuman

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-215ENST00000522963 NUTM2DQ5VT03 806 aaPredicted RBP17.43■□□□□ 0.38
PVT1-215ENST00000522963 ARHGAP23Q9P227 1491 aa17.43■□□□□ 0.38
PVT1-215ENST00000522963 TMEM131LA2VDJ0 1609 aa17.43■□□□□ 0.38
PVT1-215ENST00000522963 IQGAP1P46940 1657 aa17.42■□□□□ 0.38
PVT1-215ENST00000522963 ZNF326Q5BKZ1 582 aaKnown RBP17.42■□□□□ 0.38
PVT1-215ENST00000522963 CLTCL1P53675 1640 aa17.4■□□□□ 0.38
PVT1-215ENST00000522963 RIMS2Q9UQ26 1411 aa17.4■□□□□ 0.38
PVT1-215ENST00000522963 CERKQ8TCT0 537 aa17.4■□□□□ 0.38
PVT1-215ENST00000522963 TRPM2O94759 1503 aa17.4■□□□□ 0.38
PVT1-215ENST00000522963 MED14O60244 1454 aa17.39■□□□□ 0.37
PVT1-215ENST00000522963 HDGFP51858 240 aaKnown RBP17.39■□□□□ 0.37
PVT1-215ENST00000522963 CLSPNQ9HAW4 1339 aa17.39■□□□□ 0.37
PVT1-215ENST00000522963 KIF1BO60333 1816 aa17.38■□□□□ 0.37
PVT1-215ENST00000522963 SIN3AQ96ST3 1273 aa17.38■□□□□ 0.37
PVT1-215ENST00000522963 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.36■□□□□ 0.37
PVT1-215ENST00000522963 SLC26A8Q96RN1 970 aa17.36■□□□□ 0.37
PVT1-215ENST00000522963 CCDC144AA2RUR9 1427 aa17.36■□□□□ 0.37
PVT1-215ENST00000522963 ZFYVE9O95405 1425 aa17.34■□□□□ 0.37
PVT1-215ENST00000522963 LTBP4Q8N2S1 1624 aa17.34■□□□□ 0.37
PVT1-215ENST00000522963 NEUROD1Q13562 356 aa17.33■□□□□ 0.36
PVT1-215ENST00000522963 RGL3Q3MIN7 710 aa17.31■□□□□ 0.36
PVT1-215ENST00000522963 PLEKHG1Q9ULL1 1385 aa17.3■□□□□ 0.36
PVT1-215ENST00000522963 STRCP1A6NGW2 1772 aa17.28■□□□□ 0.36
PVT1-215ENST00000522963 FBXO41Q8TF61 875 aa17.27■□□□□ 0.36
PVT1-215ENST00000522963 SPATA31E1Q6ZUB1 1445 aa17.27■□□□□ 0.35
PVT1-215ENST00000522963 CPS1P31327 1500 aa17.26■□□□□ 0.35
PVT1-215ENST00000522963 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
PVT1-215ENST00000522963 VGFO15240 615 aaPredicted RBP17.23■□□□□ 0.35
PVT1-215ENST00000522963 KCNA6P17658 529 aa17.23■□□□□ 0.35
PVT1-215ENST00000522963 RPGRIP1LQ68CZ1 1315 aa17.22■□□□□ 0.35
PVT1-215ENST00000522963 TBX22Q9Y458 520 aa17.22■□□□□ 0.35
PVT1-215ENST00000522963 TONSLQ96HA7 1378 aa17.22■□□□□ 0.35
PVT1-215ENST00000522963 PPLO60437 1756 aa17.22■□□□□ 0.35
PVT1-215ENST00000522963 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.35
PVT1-215ENST00000522963 UBAP1LF5GYI3 381 aa17.21■□□□□ 0.35
PVT1-215ENST00000522963 PROSER2Q86WR7 435 aaPredicted RBP17.21■□□□□ 0.35
PVT1-215ENST00000522963 L3MBTL2Q969R5 705 aa17.21■□□□□ 0.35
PVT1-215ENST00000522963 RBM33Q96EV2 1170 aaKnown RBP17.21■□□□□ 0.35
PVT1-215ENST00000522963 LRRC7Q96NW7 1537 aa17.2■□□□□ 0.34
PVT1-215ENST00000522963 CHD2O14647 1828 aaKnown RBP17.19■□□□□ 0.34
PVT1-215ENST00000522963 SCAF1Q9H7N4 1312 aaKnown RBP17.19■□□□□ 0.34
PVT1-215ENST00000522963 IQSEC2Q5JU85 1478 aa17.18■□□□□ 0.34
PVT1-215ENST00000522963 NRXN3Q9Y4C0 1643 aa17.18■□□□□ 0.34
PVT1-215ENST00000522963 TIMELESSQ9UNS1 1208 aa17.18■□□□□ 0.34
PVT1-215ENST00000522963 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
PVT1-215ENST00000522963 SETBP1Q9Y6X0 1596 aa17.17■□□□□ 0.34
PVT1-215ENST00000522963 ADGRF5Q8IZF2 1346 aa17.17■□□□□ 0.34
PVT1-215ENST00000522963 DCAF11Q8TEB1 546 aa17.16■□□□□ 0.34
PVT1-215ENST00000522963 AMOTL2Q9Y2J4 779 aa17.16■□□□□ 0.34
PVT1-215ENST00000522963 PIP4K2BP78356 416 aa17.15■□□□□ 0.34
PVT1-215ENST00000522963 KDM2AQ9Y2K7 1162 aa17.15■□□□□ 0.34
PVT1-215ENST00000522963 METP08581 1390 aa17.15■□□□□ 0.34
PVT1-215ENST00000522963 TMEM94Q12767 1356 aa17.15■□□□□ 0.34
PVT1-215ENST00000522963 IFT172Q9UG01 1749 aa17.14■□□□□ 0.33
PVT1-215ENST00000522963 TOM1O60784 492 aa17.14■□□□□ 0.33
PVT1-215ENST00000522963 C14orf37Q86TY3 774 aa17.14■□□□□ 0.33
PVT1-215ENST00000522963 NWD1Q149M9 1564 aa17.14■□□□□ 0.33
PVT1-215ENST00000522963 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.33
PVT1-215ENST00000522963 PIK3R4Q99570 1358 aa17.13■□□□□ 0.33
PVT1-215ENST00000522963 PTPRUQ92729 1446 aa17.13■□□□□ 0.33
PVT1-215ENST00000522963 NKTRP30414 1462 aaKnown RBP17.12■□□□□ 0.33
PVT1-215ENST00000522963 ALKQ9UM73 1620 aa17.12■□□□□ 0.33
PVT1-215ENST00000522963 STAC3Q96MF2 364 aa17.11■□□□□ 0.33
PVT1-215ENST00000522963 MYOM2P54296 1465 aa17.1■□□□□ 0.33
PVT1-215ENST00000522963 ZEB1P37275 1124 aaPredicted RBP17.09■□□□□ 0.33
PVT1-215ENST00000522963 NBPF8Q3BBV2 869 aa17.08■□□□□ 0.32
PVT1-215ENST00000522963 SETD1AO15047 1707 aaKnown RBP17.07■□□□□ 0.32
PVT1-215ENST00000522963 NRXN1Q9ULB1 1477 aa17.07■□□□□ 0.32
PVT1-215ENST00000522963 PRAG1Q86YV5 1406 aa17.07■□□□□ 0.32
PVT1-215ENST00000522963 MSH6P52701 1360 aa17.07■□□□□ 0.32
PVT1-215ENST00000522963 TMEM132EQ6IEE7 984 aa17.07■□□□□ 0.32
PVT1-215ENST00000522963 STK26Q9P289 416 aa17.07■□□□□ 0.32
PVT1-215ENST00000522963 CFAP70Q5T0N1 1121 aa17.06■□□□□ 0.32
PVT1-215ENST00000522963 XRN1Q8IZH2 1706 aaKnown RBP17.06■□□□□ 0.32
PVT1-215ENST00000522963 PIK3C2GO75747 1445 aa17.05■□□□□ 0.32
PVT1-215ENST00000522963 C14orf93Q9H972 538 aaKnown RBP17.02■□□□□ 0.32
PVT1-215ENST00000522963 ATF3P18847 181 aa17.01■□□□□ 0.31
PVT1-215ENST00000522963 C19orf44Q9H6X5 657 aa17.01■□□□□ 0.31
PVT1-215ENST00000522963 ROBO2Q9HCK4 1378 aa17.01■□□□□ 0.31
PVT1-215ENST00000522963 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.99■□□□□ 0.31
PVT1-215ENST00000522963 NCOA3Q9Y6Q9 1424 aa16.99■□□□□ 0.31
PVT1-215ENST00000522963 ASXL1Q8IXJ9 1541 aa16.99■□□□□ 0.31
PVT1-215ENST00000522963 HSPA1LP34931 641 aa16.98■□□□□ 0.31
PVT1-215ENST00000522963 NBPF1Q3BBV0 1214 aa16.98■□□□□ 0.31
PVT1-215ENST00000522963 LAMC1P11047 1609 aa16.98■□□□□ 0.31
PVT1-215ENST00000522963 LRPPRCP42704 1394 aaKnown RBP16.98■□□□□ 0.31
PVT1-215ENST00000522963 YTHDC2Q9H6S0 1430 aaKnown RBP16.97■□□□□ 0.31
PVT1-215ENST00000522963 WAPLQ7Z5K2 1190 aa16.97■□□□□ 0.31
PVT1-215ENST00000522963 CADPS2Q86UW7 1296 aa16.97■□□□□ 0.31
PVT1-215ENST00000522963 SLAIN2Q9P270 581 aa16.97■□□□□ 0.31
PVT1-215ENST00000522963 PTCH1Q13635 1447 aa16.96■□□□□ 0.31
PVT1-215ENST00000522963 RALGAPBQ86X10 1494 aa16.96■□□□□ 0.31
PVT1-215ENST00000522963 SAFB2Q14151 953 aaKnown RBP eCLIP16.95■□□□□ 0.3
PVT1-215ENST00000522963 NALCNQ8IZF0 1738 aa16.95■□□□□ 0.3
PVT1-215ENST00000522963 ADGRL3Q9HAR2 1447 aa16.95■□□□□ 0.3
PVT1-215ENST00000522963 ROCK2O75116 1388 aaKnown RBP16.94■□□□□ 0.3
PVT1-215ENST00000522963 ABCC11Q96J66 1382 aa16.94■□□□□ 0.3
PVT1-215ENST00000522963 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
PVT1-215ENST00000522963 TRPM1Q7Z4N2 1603 aa16.94■□□□□ 0.3
PVT1-215ENST00000522963 GPRASP1Q5JY77 1395 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms