RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 EID1Q9Y6B2 187 aa26.72■■□□□ 1.87
CLK4-211ENST00000522556 NUTM2DQ5VT03 806 aaPredicted RBP26.7■■□□□ 1.86
CLK4-211ENST00000522556 FBXO41Q8TF61 875 aa26.69■■□□□ 1.86
CLK4-211ENST00000522556 KIF1BO60333 1816 aa26.67■■□□□ 1.86
CLK4-211ENST00000522556 MPHOSPH9Q99550 1183 aa26.67■■□□□ 1.86
CLK4-211ENST00000522556 CPS1P31327 1500 aa26.65■■□□□ 1.86
CLK4-211ENST00000522556 SLC26A8Q96RN1 970 aa26.64■■□□□ 1.86
CLK4-211ENST00000522556 PLEKHG1Q9ULL1 1385 aa26.62■■□□□ 1.85
CLK4-211ENST00000522556 NEXMIFQ5QGS0 1516 aa26.62■■□□□ 1.85
CLK4-211ENST00000522556 IQSEC2Q5JU85 1478 aa26.61■■□□□ 1.85
CLK4-211ENST00000522556 NRXN3Q9Y4C0 1643 aa26.6■■□□□ 1.85
CLK4-211ENST00000522556 PPP1R15AO75807 674 aaPredicted RBP26.59■■□□□ 1.85
CLK4-211ENST00000522556 LRRC7Q96NW7 1537 aa26.58■■□□□ 1.85
CLK4-211ENST00000522556 XIRP1Q702N8 1843 aaKnown RBP26.58■■□□□ 1.84
CLK4-211ENST00000522556 ADAMTS13Q76LX8 1427 aa26.57■■□□□ 1.84
CLK4-211ENST00000522556 ZNF326Q5BKZ1 582 aaKnown RBP26.56■■□□□ 1.84
CLK4-211ENST00000522556 NWD1Q149M9 1564 aa26.55■■□□□ 1.84
CLK4-211ENST00000522556 BCANQ96GW7 911 aa26.55■■□□□ 1.84
CLK4-211ENST00000522556 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.53■■□□□ 1.84
CLK4-211ENST00000522556 PPLO60437 1756 aa26.53■■□□□ 1.84
CLK4-211ENST00000522556 CCDC144AA2RUR9 1427 aa26.52■■□□□ 1.84
CLK4-211ENST00000522556 CHD2O14647 1828 aaKnown RBP26.51■■□□□ 1.83
CLK4-211ENST00000522556 ALKQ9UM73 1620 aa26.51■■□□□ 1.83
CLK4-211ENST00000522556 SETBP1Q9Y6X0 1596 aa26.5■■□□□ 1.83
CLK4-211ENST00000522556 HDGFP51858 240 aaKnown RBP26.49■■□□□ 1.83
CLK4-211ENST00000522556 DIP2AQ14689 1571 aa26.49■■□□□ 1.83
CLK4-211ENST00000522556 SPATA31E1Q6ZUB1 1445 aa26.48■■□□□ 1.83
CLK4-211ENST00000522556 IFT172Q9UG01 1749 aa26.48■■□□□ 1.83
CLK4-211ENST00000522556 RBM33Q96EV2 1170 aaKnown RBP26.46■■□□□ 1.83
CLK4-211ENST00000522556 KCNA6P17658 529 aa26.45■■□□□ 1.82
CLK4-211ENST00000522556 SETD1AO15047 1707 aaKnown RBP26.45■■□□□ 1.82
CLK4-211ENST00000522556 UBAP1LF5GYI3 381 aa26.44■■□□□ 1.82
CLK4-211ENST00000522556 PTPRUQ92729 1446 aa26.44■■□□□ 1.82
CLK4-211ENST00000522556 NKTRP30414 1462 aaKnown RBP26.43■■□□□ 1.82
CLK4-211ENST00000522556 ACIN1Q9UKV3 1341 aaKnown RBP26.43■■□□□ 1.82
CLK4-211ENST00000522556 TBX22Q9Y458 520 aa26.43■■□□□ 1.82
CLK4-211ENST00000522556 HRCP23327 699 aa26.42■■□□□ 1.82
CLK4-211ENST00000522556 RGL3Q3MIN7 710 aa26.41■■□□□ 1.82
CLK4-211ENST00000522556 TMEM94Q12767 1356 aa26.41■■□□□ 1.82
CLK4-211ENST00000522556 ANKRD30BQ9BXX2 1392 aa26.41■■□□□ 1.82
CLK4-211ENST00000522556 XRN1Q8IZH2 1706 aaKnown RBP26.4■■□□□ 1.82
CLK4-211ENST00000522556 METP08581 1390 aa26.39■■□□□ 1.82
CLK4-211ENST00000522556 PROSER2Q86WR7 435 aaPredicted RBP26.35■■□□□ 1.81
CLK4-211ENST00000522556 RPGRIP1LQ68CZ1 1315 aa26.35■■□□□ 1.81
CLK4-211ENST00000522556 ADGRF5Q8IZF2 1346 aa26.35■■□□□ 1.81
CLK4-211ENST00000522556 PIK3R4Q99570 1358 aa26.33■■□□□ 1.81
CLK4-211ENST00000522556 PIP4K2BP78356 416 aa26.32■■□□□ 1.8
CLK4-211ENST00000522556 VGFO15240 615 aaPredicted RBP26.31■■□□□ 1.8
CLK4-211ENST00000522556 AMOTL2Q9Y2J4 779 aa26.3■■□□□ 1.8
CLK4-211ENST00000522556 SCAF1Q9H7N4 1312 aaKnown RBP26.3■■□□□ 1.8
CLK4-211ENST00000522556 ASXL1Q8IXJ9 1541 aa26.29■■□□□ 1.8
CLK4-211ENST00000522556 TOM1O60784 492 aa26.27■■□□□ 1.8
CLK4-211ENST00000522556 PIK3C2GO75747 1445 aa26.26■■□□□ 1.79
CLK4-211ENST00000522556 MYOM2P54296 1465 aa26.23■■□□□ 1.79
CLK4-211ENST00000522556 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.23■■□□□ 1.79
CLK4-211ENST00000522556 TRIM26Q12899 539 aaPredicted RBP26.23■■□□□ 1.79
CLK4-211ENST00000522556 NRXN1Q9ULB1 1477 aa26.23■■□□□ 1.79
CLK4-211ENST00000522556 NALCNQ8IZF0 1738 aa26.22■■□□□ 1.79
CLK4-211ENST00000522556 MSH6P52701 1360 aa26.2■■□□□ 1.78
CLK4-211ENST00000522556 ROBO2Q9HCK4 1378 aa26.19■■□□□ 1.78
CLK4-211ENST00000522556 HSPA1LP34931 641 aa26.18■■□□□ 1.78
CLK4-211ENST00000522556 DHX57Q6P158 1386 aaKnown RBP26.18■■□□□ 1.78
CLK4-211ENST00000522556 ROBO1Q9Y6N7 1651 aa26.17■■□□□ 1.78
CLK4-211ENST00000522556 PTCH1Q13635 1447 aa26.15■■□□□ 1.78
CLK4-211ENST00000522556 NCOA3Q9Y6Q9 1424 aa26.15■■□□□ 1.78
CLK4-211ENST00000522556 C14orf37Q86TY3 774 aa26.15■■□□□ 1.78
CLK4-211ENST00000522556 PRAG1Q86YV5 1406 aa26.14■■□□□ 1.78
CLK4-211ENST00000522556 TMEM132EQ6IEE7 984 aa26.14■■□□□ 1.78
CLK4-211ENST00000522556 KNDC1Q76NI1 1749 aa26.13■■□□□ 1.77
CLK4-211ENST00000522556 LAMC1P11047 1609 aa26.13■■□□□ 1.77
CLK4-211ENST00000522556 KDM2AQ9Y2K7 1162 aa26.12■■□□□ 1.77
CLK4-211ENST00000522556 CFAP70Q5T0N1 1121 aa26.11■■□□□ 1.77
CLK4-211ENST00000522556 ADGRL3Q9HAR2 1447 aa26.11■■□□□ 1.77
CLK4-211ENST00000522556 DCAF11Q8TEB1 546 aa26.1■■□□□ 1.77
CLK4-211ENST00000522556 STK26Q9P289 416 aa26.09■■□□□ 1.77
CLK4-211ENST00000522556 C19orf44Q9H6X5 657 aa26.08■■□□□ 1.77
CLK4-211ENST00000522556 C14orf93Q9H972 538 aaKnown RBP26.08■■□□□ 1.77
CLK4-211ENST00000522556 LRPPRCP42704 1394 aaKnown RBP26.07■■□□□ 1.76
CLK4-211ENST00000522556 TECPR2O15040 1411 aa26.07■■□□□ 1.76
CLK4-211ENST00000522556 FAM135BQ49AJ0 1406 aa26.07■■□□□ 1.76
CLK4-211ENST00000522556 SIN3AQ96ST3 1273 aa26.07■■□□□ 1.76
CLK4-211ENST00000522556 ADGRB1O14514 1584 aa26.07■■□□□ 1.76
CLK4-211ENST00000522556 YTHDC2Q9H6S0 1430 aaKnown RBP26.06■■□□□ 1.76
CLK4-211ENST00000522556 PLEKHH1Q9ULM0 1364 aa26.06■■□□□ 1.76
CLK4-211ENST00000522556 SLAIN2Q9P270 581 aa26.05■■□□□ 1.76
CLK4-211ENST00000522556 DCCP43146 1447 aa26.05■■□□□ 1.76
CLK4-211ENST00000522556 MST1RQ04912 1400 aa26.04■■□□□ 1.76
CLK4-211ENST00000522556 ATF3P18847 181 aa26.02■■□□□ 1.76
CLK4-211ENST00000522556 WAPLQ7Z5K2 1190 aa26.01■■□□□ 1.75
CLK4-211ENST00000522556 CADPS2Q86UW7 1296 aa26.01■■□□□ 1.75
CLK4-211ENST00000522556 ABCC11Q96J66 1382 aa26.01■■□□□ 1.75
CLK4-211ENST00000522556 PHLPP1O60346 1717 aa26■■□□□ 1.75
CLK4-211ENST00000522556 COL16A1Q07092 1604 aaPredicted RBP25.96■■□□□ 1.75
CLK4-211ENST00000522556 CDC42BPGQ6DT37 1551 aa25.96■■□□□ 1.75
CLK4-211ENST00000522556 NEUROD1Q13562 356 aa25.96■■□□□ 1.75
CLK4-211ENST00000522556 BRINP3Q76B58 766 aa25.94■■□□□ 1.74
CLK4-211ENST00000522556 AHDC1Q5TGY3 1603 aaPredicted RBP25.93■■□□□ 1.74
CLK4-211ENST00000522556 L3MBTL2Q969R5 705 aa25.93■■□□□ 1.74
CLK4-211ENST00000522556 MED1Q15648 1581 aaPredicted RBP25.93■■□□□ 1.74
CLK4-211ENST00000522556 DLC1Q96QB1 1528 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms