RNA–Protein interactions for RNA: ENST00000521941.1

CTNNA1-231, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 224 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-231	ENST00000521941	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.45	□□□□□ -0.42
CTNNA1-231	ENST00000521941	ILDR1	Q86SU0	546 aa	Predicted RBP	12.45	□□□□□ -0.42
CTNNA1-231	ENST00000521941	BCAN	Q96GW7	911 aa		12.45	□□□□□ -0.42
CTNNA1-231	ENST00000521941	STRCP1	A6NGW2	1772 aa		12.43	□□□□□ -0.42
CTNNA1-231	ENST00000521941	ZNF326	Q5BKZ1	582 aa	Known RBP	12.43	□□□□□ -0.42
CTNNA1-231	ENST00000521941	ZFYVE9	O95405	1425 aa		12.43	□□□□□ -0.42
CTNNA1-231	ENST00000521941	MPHOSPH9	Q99550	1183 aa		12.42	□□□□□ -0.42
CTNNA1-231	ENST00000521941	FBXO41	Q8TF61	875 aa		12.41	□□□□□ -0.42
CTNNA1-231	ENST00000521941	SLC26A8	Q96RN1	970 aa		12.41	□□□□□ -0.42
CTNNA1-231	ENST00000521941	CPS1	P31327	1500 aa		12.41	□□□□□ -0.42
CTNNA1-231	ENST00000521941	PLEKHG1	Q9ULL1	1385 aa		12.39	□□□□□ -0.43
CTNNA1-231	ENST00000521941	CCDC144A	A2RUR9	1427 aa		12.38	□□□□□ -0.43
CTNNA1-231	ENST00000521941	HDGF	P51858	240 aa	Known RBP	12.38	□□□□□ -0.43
CTNNA1-231	ENST00000521941	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.38	□□□□□ -0.43
CTNNA1-231	ENST00000521941	NEXMIF	Q5QGS0	1516 aa		12.37	□□□□□ -0.43
CTNNA1-231	ENST00000521941	IQSEC2	Q5JU85	1478 aa		12.37	□□□□□ -0.43
CTNNA1-231	ENST00000521941	PPL	O60437	1756 aa		12.35	□□□□□ -0.43
CTNNA1-231	ENST00000521941	ACIN1	Q9UKV3	1341 aa	Known RBP	12.35	□□□□□ -0.43
CTNNA1-231	ENST00000521941	DIP2A	Q14689	1571 aa		12.35	□□□□□ -0.43
CTNNA1-231	ENST00000521941	NRXN3	Q9Y4C0	1643 aa		12.34	□□□□□ -0.43
CTNNA1-231	ENST00000521941	LRRC7	Q96NW7	1537 aa		12.34	□□□□□ -0.43
CTNNA1-231	ENST00000521941	UBAP1L	F5GYI3	381 aa		12.34	□□□□□ -0.43
CTNNA1-231	ENST00000521941	NWD1	Q149M9	1564 aa		12.34	□□□□□ -0.43
CTNNA1-231	ENST00000521941	CHD2	O14647	1828 aa	Known RBP	12.33	□□□□□ -0.44
CTNNA1-231	ENST00000521941	XIRP1	Q702N8	1843 aa	Known RBP	12.33	□□□□□ -0.44
CTNNA1-231	ENST00000521941	RGL3	Q3MIN7	710 aa		12.33	□□□□□ -0.44
CTNNA1-231	ENST00000521941	ADAMTS13	Q76LX8	1427 aa		12.33	□□□□□ -0.44
CTNNA1-231	ENST00000521941	SCAF1	Q9H7N4	1312 aa	Known RBP	12.33	□□□□□ -0.44
CTNNA1-231	ENST00000521941	SETBP1	Q9Y6X0	1596 aa		12.32	□□□□□ -0.44
CTNNA1-231	ENST00000521941	RBM33	Q96EV2	1170 aa	Known RBP	12.32	□□□□□ -0.44
CTNNA1-231	ENST00000521941	IFT172	Q9UG01	1749 aa		12.31	□□□□□ -0.44
CTNNA1-231	ENST00000521941	NKTR	P30414	1462 aa	Known RBP	12.3	□□□□□ -0.44
CTNNA1-231	ENST00000521941	KCNA6	P17658	529 aa		12.3	□□□□□ -0.44
CTNNA1-231	ENST00000521941	SPATA31E1	Q6ZUB1	1445 aa		12.29	□□□□□ -0.44
CTNNA1-231	ENST00000521941	PIP4K2B	P78356	416 aa		12.29	□□□□□ -0.44
CTNNA1-231	ENST00000521941	PROSER2	Q86WR7	435 aa	Predicted RBP	12.29	□□□□□ -0.44
CTNNA1-231	ENST00000521941	TBX22	Q9Y458	520 aa		12.29	□□□□□ -0.44
CTNNA1-231	ENST00000521941	TMEM94	Q12767	1356 aa		12.29	□□□□□ -0.44
CTNNA1-231	ENST00000521941	HRC	P23327	699 aa		12.28	□□□□□ -0.44
CTNNA1-231	ENST00000521941	SETD1A	O15047	1707 aa	Known RBP	12.28	□□□□□ -0.44
CTNNA1-231	ENST00000521941	VGF	O15240	615 aa	Predicted RBP	12.27	□□□□□ -0.45
CTNNA1-231	ENST00000521941	XRN1	Q8IZH2	1706 aa	Known RBP	12.27	□□□□□ -0.45
CTNNA1-231	ENST00000521941	RPGRIP1L	Q68CZ1	1315 aa		12.27	□□□□□ -0.45
CTNNA1-231	ENST00000521941	ANKRD30B	Q9BXX2	1392 aa		12.27	□□□□□ -0.45
CTNNA1-231	ENST00000521941	PTPRU	Q92729	1446 aa		12.27	□□□□□ -0.45
CTNNA1-231	ENST00000521941	ALK	Q9UM73	1620 aa		12.26	□□□□□ -0.45
CTNNA1-231	ENST00000521941	TOM1	O60784	492 aa		12.26	□□□□□ -0.45
CTNNA1-231	ENST00000521941	TRIM26	Q12899	539 aa	Predicted RBP	12.26	□□□□□ -0.45
CTNNA1-231	ENST00000521941	MET	P08581	1390 aa		12.26	□□□□□ -0.45
CTNNA1-231	ENST00000521941	C14orf37	Q86TY3	774 aa		12.25	□□□□□ -0.45
CTNNA1-231	ENST00000521941	AMOTL2	Q9Y2J4	779 aa		12.25	□□□□□ -0.45
CTNNA1-231	ENST00000521941	ADGRF5	Q8IZF2	1346 aa		12.25	□□□□□ -0.45
CTNNA1-231	ENST00000521941	PIK3R4	Q99570	1358 aa		12.25	□□□□□ -0.45
CTNNA1-231	ENST00000521941	MSH6	P52701	1360 aa		12.23	□□□□□ -0.45
CTNNA1-231	ENST00000521941	PIK3C2G	O75747	1445 aa		12.21	□□□□□ -0.45
CTNNA1-231	ENST00000521941	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	12.21	□□□□□ -0.45
CTNNA1-231	ENST00000521941	ASXL1	Q8IXJ9	1541 aa		12.21	□□□□□ -0.46
CTNNA1-231	ENST00000521941	MYOM2	P54296	1465 aa		12.21	□□□□□ -0.46
CTNNA1-231	ENST00000521941	NALCN	Q8IZF0	1738 aa		12.2	□□□□□ -0.46
CTNNA1-231	ENST00000521941	KDM2A	Q9Y2K7	1162 aa		12.2	□□□□□ -0.46
CTNNA1-231	ENST00000521941	LAMC1	P11047	1609 aa		12.19	□□□□□ -0.46
CTNNA1-231	ENST00000521941	ROBO1	Q9Y6N7	1651 aa		12.19	□□□□□ -0.46
CTNNA1-231	ENST00000521941	TMEM132E	Q6IEE7	984 aa		12.18	□□□□□ -0.46
CTNNA1-231	ENST00000521941	DCAF11	Q8TEB1	546 aa		12.18	□□□□□ -0.46
CTNNA1-231	ENST00000521941	STK26	Q9P289	416 aa		12.18	□□□□□ -0.46
CTNNA1-231	ENST00000521941	DHX57	Q6P158	1386 aa	Known RBP	12.18	□□□□□ -0.46
CTNNA1-231	ENST00000521941	NRXN1	Q9ULB1	1477 aa		12.17	□□□□□ -0.46
CTNNA1-231	ENST00000521941	HSPA1L	P34931	641 aa		12.17	□□□□□ -0.46
CTNNA1-231	ENST00000521941	PTCH1	Q13635	1447 aa		12.17	□□□□□ -0.46
CTNNA1-231	ENST00000521941	KNDC1	Q76NI1	1749 aa		12.17	□□□□□ -0.46
CTNNA1-231	ENST00000521941	ROBO2	Q9HCK4	1378 aa		12.17	□□□□□ -0.46
CTNNA1-231	ENST00000521941	CFAP70	Q5T0N1	1121 aa		12.16	□□□□□ -0.46
CTNNA1-231	ENST00000521941	NCOA3	Q9Y6Q9	1424 aa		12.16	□□□□□ -0.46
CTNNA1-231	ENST00000521941	ADGRL3	Q9HAR2	1447 aa		12.15	□□□□□ -0.46
CTNNA1-231	ENST00000521941	ATF3	P18847	181 aa		12.15	□□□□□ -0.46
CTNNA1-231	ENST00000521941	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.14	□□□□□ -0.47
CTNNA1-231	ENST00000521941	NEUROD1	Q13562	356 aa		12.14	□□□□□ -0.47
CTNNA1-231	ENST00000521941	SIN3A	Q96ST3	1273 aa		12.14	□□□□□ -0.47
CTNNA1-231	ENST00000521941	CADPS2	Q86UW7	1296 aa		12.13	□□□□□ -0.47
CTNNA1-231	ENST00000521941	C19orf44	Q9H6X5	657 aa		12.13	□□□□□ -0.47
CTNNA1-231	ENST00000521941	LRPPRC	P42704	1394 aa	Known RBP	12.13	□□□□□ -0.47
CTNNA1-231	ENST00000521941	PHLPP1	O60346	1717 aa		12.12	□□□□□ -0.47
CTNNA1-231	ENST00000521941	PCGF6	Q9BYE7	350 aa		12.12	□□□□□ -0.47
CTNNA1-231	ENST00000521941	C14orf93	Q9H972	538 aa	Known RBP	12.12	□□□□□ -0.47
CTNNA1-231	ENST00000521941	SLAIN2	Q9P270	581 aa		12.12	□□□□□ -0.47
CTNNA1-231	ENST00000521941	DCC	P43146	1447 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	FAM135B	Q49AJ0	1406 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	PRAG1	Q86YV5	1406 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	PLEKHH1	Q9ULM0	1364 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	WAPL	Q7Z5K2	1190 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	TECPR2	O15040	1411 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	MST1R	Q04912	1400 aa		12.11	□□□□□ -0.47
CTNNA1-231	ENST00000521941	ADGRB1	O14514	1584 aa		12.1	□□□□□ -0.47
CTNNA1-231	ENST00000521941	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.1	□□□□□ -0.47
CTNNA1-231	ENST00000521941	ABCC11	Q96J66	1382 aa		12.09	□□□□□ -0.47
CTNNA1-231	ENST00000521941	CDC42BPG	Q6DT37	1551 aa		12.09	□□□□□ -0.47
CTNNA1-231	ENST00000521941	TRAK1	Q9UPV9	953 aa		12.08	□□□□□ -0.48
CTNNA1-231	ENST00000521941	NUTM2F	A1L443	756 aa		12.07	□□□□□ -0.48
CTNNA1-231	ENST00000521941	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.07	□□□□□ -0.48
CTNNA1-231	ENST00000521941	L3MBTL2	Q969R5	705 aa		12.07	□□□□□ -0.48

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