RNA–Protein interactions for RNA: ENST00000520913.1

PVT1-209, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 584 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-209ENST00000520913 TOM1O60784 492 aa16.35■□□□□ 0.21
PVT1-209ENST00000520913 NKTRP30414 1462 aaKnown RBP16.35■□□□□ 0.21
PVT1-209ENST00000520913 NAIPQ13075 1403 aa16.34■□□□□ 0.21
PVT1-209ENST00000520913 RIMS2Q9UQ26 1411 aa16.34■□□□□ 0.21
PVT1-209ENST00000520913 CLTCL1P53675 1640 aa16.33■□□□□ 0.2
PVT1-209ENST00000520913 TRPM2O94759 1503 aa16.32■□□□□ 0.2
PVT1-209ENST00000520913 SCAF1Q9H7N4 1312 aaKnown RBP16.32■□□□□ 0.2
PVT1-209ENST00000520913 PLEKHG1Q9ULL1 1385 aa16.32■□□□□ 0.2
PVT1-209ENST00000520913 HFM1A2PYH4 1435 aa16.31■□□□□ 0.2
PVT1-209ENST00000520913 PIP4K2BP78356 416 aa16.3■□□□□ 0.2
PVT1-209ENST00000520913 DISP3Q9P2K9 1392 aa16.29■□□□□ 0.2
PVT1-209ENST00000520913 PPP1R15AO75807 674 aaPredicted RBP16.28■□□□□ 0.2
PVT1-209ENST00000520913 NRXN3Q9Y4C0 1643 aa16.27■□□□□ 0.2
PVT1-209ENST00000520913 MED1Q15648 1581 aaPredicted RBP16.27■□□□□ 0.2
PVT1-209ENST00000520913 HDGFP51858 240 aaKnown RBP16.27■□□□□ 0.2
PVT1-209ENST00000520913 CHGAP10645 457 aaKnown RBP16.26■□□□□ 0.19
PVT1-209ENST00000520913 SLC26A8Q96RN1 970 aa16.26■□□□□ 0.19
PVT1-209ENST00000520913 ROBO1Q9Y6N7 1651 aa16.26■□□□□ 0.19
PVT1-209ENST00000520913 SETBP1Q9Y6X0 1596 aa16.26■□□□□ 0.19
PVT1-209ENST00000520913 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.25■□□□□ 0.19
PVT1-209ENST00000520913 KCNA6P17658 529 aa16.24■□□□□ 0.19
PVT1-209ENST00000520913 BCANQ96GW7 911 aa16.24■□□□□ 0.19
PVT1-209ENST00000520913 TMEM94Q12767 1356 aa16.24■□□□□ 0.19
PVT1-209ENST00000520913 NEXMIFQ5QGS0 1516 aa16.24■□□□□ 0.19
PVT1-209ENST00000520913 XRN1Q8IZH2 1706 aaKnown RBP16.23■□□□□ 0.19
PVT1-209ENST00000520913 ADAMTS13Q76LX8 1427 aa16.23■□□□□ 0.19
PVT1-209ENST00000520913 HSPA1LP34931 641 aa16.23■□□□□ 0.19
PVT1-209ENST00000520913 PPLO60437 1756 aa16.22■□□□□ 0.19
PVT1-209ENST00000520913 SETD1AO15047 1707 aaKnown RBP16.2■□□□□ 0.18
PVT1-209ENST00000520913 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.2■□□□□ 0.18
PVT1-209ENST00000520913 PIK3R4Q99570 1358 aa16.2■□□□□ 0.18
PVT1-209ENST00000520913 MSH6P52701 1360 aa16.18■□□□□ 0.18
PVT1-209ENST00000520913 PROSER2Q86WR7 435 aaPredicted RBP16.18■□□□□ 0.18
PVT1-209ENST00000520913 SENP3Q9H4L4 574 aaPredicted RBP16.18■□□□□ 0.18
PVT1-209ENST00000520913 PHLPP1O60346 1717 aa16.18■□□□□ 0.18
PVT1-209ENST00000520913 IFT172Q9UG01 1749 aa16.17■□□□□ 0.18
PVT1-209ENST00000520913 TBX22Q9Y458 520 aa16.17■□□□□ 0.18
PVT1-209ENST00000520913 NUTM2DQ5VT03 806 aaPredicted RBP16.16■□□□□ 0.18
PVT1-209ENST00000520913 FAM135BQ49AJ0 1406 aa16.16■□□□□ 0.18
PVT1-209ENST00000520913 NCOA3Q9Y6Q9 1424 aa16.16■□□□□ 0.18
PVT1-209ENST00000520913 TRIM52Q96A61 297 aa16.15■□□□□ 0.18
PVT1-209ENST00000520913 NALCNQ8IZF0 1738 aa16.14■□□□□ 0.17
PVT1-209ENST00000520913 ZNF326Q5BKZ1 582 aaKnown RBP16.14■□□□□ 0.17
PVT1-209ENST00000520913 PTPRUQ92729 1446 aa16.12■□□□□ 0.17
PVT1-209ENST00000520913 RBM33Q96EV2 1170 aaKnown RBP16.12■□□□□ 0.17
PVT1-209ENST00000520913 SLC4A1APQ9BWU0 796 aaKnown RBP16.12■□□□□ 0.17
PVT1-209ENST00000520913 ILDR2Q71H61 639 aa16.11■□□□□ 0.17
PVT1-209ENST00000520913 COL16A1Q07092 1604 aaPredicted RBP16.1■□□□□ 0.17
PVT1-209ENST00000520913 DCCP43146 1447 aa16.09■□□□□ 0.17
PVT1-209ENST00000520913 AHDC1Q5TGY3 1603 aaPredicted RBP16.08■□□□□ 0.16
PVT1-209ENST00000520913 CCDC144AA2RUR9 1427 aa16.07■□□□□ 0.16
PVT1-209ENST00000520913 NHSL1Q5SYE7 1610 aa16.07■□□□□ 0.16
PVT1-209ENST00000520913 SHPRHQ149N8 1683 aa16.06■□□□□ 0.16
PVT1-209ENST00000520913 C14orf37Q86TY3 774 aa16.06■□□□□ 0.16
PVT1-209ENST00000520913 AMOTL2Q9Y2J4 779 aa16.06■□□□□ 0.16
PVT1-209ENST00000520913 KNDC1Q76NI1 1749 aa16.05■□□□□ 0.16
PVT1-209ENST00000520913 METP08581 1390 aa16.05■□□□□ 0.16
PVT1-209ENST00000520913 ACIN1Q9UKV3 1341 aaKnown RBP16.05■□□□□ 0.16
PVT1-209ENST00000520913 PTCH1Q13635 1447 aa16.04■□□□□ 0.16
PVT1-209ENST00000520913 SETD5Q9C0A6 1442 aa16.04■□□□□ 0.16
PVT1-209ENST00000520913 PRAG1Q86YV5 1406 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 ADGRL3Q9HAR2 1447 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 RPGRIP1LQ68CZ1 1315 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 CADPS2Q86UW7 1296 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 PHF23Q9BUL5 403 aaPredicted RBP16.03■□□□□ 0.16
PVT1-209ENST00000520913 SLAIN2Q9P270 581 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 LAMC1P11047 1609 aa16.03■□□□□ 0.16
PVT1-209ENST00000520913 SOCS7O14512 581 aa16.02■□□□□ 0.16
PVT1-209ENST00000520913 VGFO15240 615 aaPredicted RBP16.02■□□□□ 0.16
PVT1-209ENST00000520913 C19orf44Q9H6X5 657 aa16.02■□□□□ 0.16
PVT1-209ENST00000520913 SPATA31E1Q6ZUB1 1445 aa16.02■□□□□ 0.15
PVT1-209ENST00000520913 ASXL1Q8IXJ9 1541 aa16.01■□□□□ 0.15
PVT1-209ENST00000520913 ATF3P18847 181 aa16.01■□□□□ 0.15
PVT1-209ENST00000520913 FOXD1Q16676 465 aa16.01■□□□□ 0.15
PVT1-209ENST00000520913 MPHOSPH9Q99550 1183 aa16■□□□□ 0.15
PVT1-209ENST00000520913 MST1RQ04912 1400 aa15.99■□□□□ 0.15
PVT1-209ENST00000520913 RAB3GAP2Q9H2M9 1393 aa15.99■□□□□ 0.15
PVT1-209ENST00000520913 JCADQ9P266 1359 aa15.98■□□□□ 0.15
PVT1-209ENST00000520913 CDC42BPGQ6DT37 1551 aa15.97■□□□□ 0.15
PVT1-209ENST00000520913 ANKRD30BQ9BXX2 1392 aa15.97■□□□□ 0.15
PVT1-209ENST00000520913 MYOM2P54296 1465 aa15.95■□□□□ 0.14
PVT1-209ENST00000520913 PIK3C2GO75747 1445 aa15.94■□□□□ 0.14
PVT1-209ENST00000520913 ROBO2Q9HCK4 1378 aa15.93■□□□□ 0.14
PVT1-209ENST00000520913 BRINP3Q76B58 766 aa15.92■□□□□ 0.14
PVT1-209ENST00000520913 TECPR2O15040 1411 aa15.92■□□□□ 0.14
PVT1-209ENST00000520913 FMN2Q9NZ56 1722 aa15.91■□□□□ 0.14
PVT1-209ENST00000520913 LRP6O75581 1613 aa15.91■□□□□ 0.14
PVT1-209ENST00000520913 ADGRF5Q8IZF2 1346 aa15.91■□□□□ 0.14
PVT1-209ENST00000520913 C1orf167Q5SNV9 1468 aa15.91■□□□□ 0.14
PVT1-209ENST00000520913 NRXN1Q9ULB1 1477 aa15.91■□□□□ 0.14
PVT1-209ENST00000520913 RGL3Q3MIN7 710 aa15.9■□□□□ 0.14
PVT1-209ENST00000520913 SPATA31A6Q5VVP1 1343 aa15.89■□□□□ 0.13
PVT1-209ENST00000520913 KIF1AQ12756 1690 aa15.88■□□□□ 0.13
PVT1-209ENST00000520913 LRPPRCP42704 1394 aaKnown RBP15.87■□□□□ 0.13
PVT1-209ENST00000520913 RGS17Q9UGC6 210 aaPredicted RBP15.86■□□□□ 0.13
PVT1-209ENST00000520913 YTHDC2Q9H6S0 1430 aaKnown RBP15.85■□□□□ 0.13
PVT1-209ENST00000520913 RGPD8O14715 1765 aaPredicted RBP15.85■□□□□ 0.13
PVT1-209ENST00000520913 COL22A1Q8NFW1 1626 aaPredicted RBP15.85■□□□□ 0.13
PVT1-209ENST00000520913 MARF1Q9Y4F3 1742 aaKnown RBP15.84■□□□□ 0.13
PVT1-209ENST00000520913 ABCC11Q96J66 1382 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms