RNA–Protein interactions for RNA: ENST00000520229.1

PDGFRB-206, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-206ENST00000520229 NWD1Q149M9 1564 aa23.14■■□□□ 1.3
PDGFRB-206ENST00000520229 CHGAP10645 457 aaKnown RBP23.14■■□□□ 1.29
PDGFRB-206ENST00000520229 SPHKAPQ2M3C7 1700 aa23.13■■□□□ 1.29
PDGFRB-206ENST00000520229 HSPA1LP34931 641 aa23.1■■□□□ 1.29
PDGFRB-206ENST00000520229 SLC4A1APQ9BWU0 796 aaKnown RBP23.1■■□□□ 1.29
PDGFRB-206ENST00000520229 MED1Q15648 1581 aaPredicted RBP23.08■■□□□ 1.29
PDGFRB-206ENST00000520229 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.28
PDGFRB-206ENST00000520229 TOM1O60784 492 aa23.07■■□□□ 1.28
PDGFRB-206ENST00000520229 SETD5Q9C0A6 1442 aa23.07■■□□□ 1.28
PDGFRB-206ENST00000520229 PPP1R15AO75807 674 aaPredicted RBP23.06■■□□□ 1.28
PDGFRB-206ENST00000520229 HDGFP51858 240 aaKnown RBP23.06■■□□□ 1.28
PDGFRB-206ENST00000520229 TRPM2O94759 1503 aa23.06■■□□□ 1.28
PDGFRB-206ENST00000520229 PIP4K2BP78356 416 aa23.03■■□□□ 1.28
PDGFRB-206ENST00000520229 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.03■■□□□ 1.28
PDGFRB-206ENST00000520229 BCANQ96GW7 911 aa23.03■■□□□ 1.28
PDGFRB-206ENST00000520229 ACIN1Q9UKV3 1341 aaKnown RBP23.03■■□□□ 1.28
PDGFRB-206ENST00000520229 CHD2O14647 1828 aaKnown RBP23.03■■□□□ 1.28
PDGFRB-206ENST00000520229 CLTCL1P53675 1640 aa23.02■■□□□ 1.28
PDGFRB-206ENST00000520229 NKTRP30414 1462 aaKnown RBP23.02■■□□□ 1.28
PDGFRB-206ENST00000520229 PLEKHG1Q9ULL1 1385 aa23.01■■□□□ 1.27
PDGFRB-206ENST00000520229 SLC26A8Q96RN1 970 aa23■■□□□ 1.27
PDGFRB-206ENST00000520229 RAB3GAP2Q9H2M9 1393 aa22.99■■□□□ 1.27
PDGFRB-206ENST00000520229 ZNF326Q5BKZ1 582 aaKnown RBP22.98■■□□□ 1.27
PDGFRB-206ENST00000520229 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
PDGFRB-206ENST00000520229 TMEM94Q12767 1356 aa22.98■■□□□ 1.27
PDGFRB-206ENST00000520229 ADAMTS13Q76LX8 1427 aa22.98■■□□□ 1.27
PDGFRB-206ENST00000520229 KCNA6P17658 529 aa22.97■■□□□ 1.27
PDGFRB-206ENST00000520229 NUTM2DQ5VT03 806 aaPredicted RBP22.97■■□□□ 1.27
PDGFRB-206ENST00000520229 MPHOSPH9Q99550 1183 aa22.97■■□□□ 1.27
PDGFRB-206ENST00000520229 FOXD1Q16676 465 aa22.96■■□□□ 1.27
PDGFRB-206ENST00000520229 NRXN3Q9Y4C0 1643 aa22.96■■□□□ 1.27
PDGFRB-206ENST00000520229 SCAF1Q9H7N4 1312 aaKnown RBP22.95■■□□□ 1.26
PDGFRB-206ENST00000520229 KIF1BO60333 1816 aa22.94■■□□□ 1.26
PDGFRB-206ENST00000520229 DIP2AQ14689 1571 aa22.93■■□□□ 1.26
PDGFRB-206ENST00000520229 SOCS7O14512 581 aa22.93■■□□□ 1.26
PDGFRB-206ENST00000520229 FAM135BQ49AJ0 1406 aa22.91■■□□□ 1.26
PDGFRB-206ENST00000520229 ROBO1Q9Y6N7 1651 aa22.9■■□□□ 1.26
PDGFRB-206ENST00000520229 CCDC144AA2RUR9 1427 aa22.9■■□□□ 1.26
PDGFRB-206ENST00000520229 NEXMIFQ5QGS0 1516 aa22.88■■□□□ 1.25
PDGFRB-206ENST00000520229 TBX22Q9Y458 520 aa22.88■■□□□ 1.25
PDGFRB-206ENST00000520229 SETBP1Q9Y6X0 1596 aa22.87■■□□□ 1.25
PDGFRB-206ENST00000520229 XRN1Q8IZH2 1706 aaKnown RBP22.85■■□□□ 1.25
PDGFRB-206ENST00000520229 RBM33Q96EV2 1170 aaKnown RBP22.85■■□□□ 1.25
PDGFRB-206ENST00000520229 PTPRUQ92729 1446 aa22.84■■□□□ 1.25
PDGFRB-206ENST00000520229 HRCP23327 699 aa22.83■■□□□ 1.25
PDGFRB-206ENST00000520229 PROSER2Q86WR7 435 aaPredicted RBP22.83■■□□□ 1.25
PDGFRB-206ENST00000520229 RPGRIP1LQ68CZ1 1315 aa22.82■■□□□ 1.24
PDGFRB-206ENST00000520229 PIK3R4Q99570 1358 aa22.81■■□□□ 1.24
PDGFRB-206ENST00000520229 NCOA3Q9Y6Q9 1424 aa22.8■■□□□ 1.24
PDGFRB-206ENST00000520229 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.79■■□□□ 1.24
PDGFRB-206ENST00000520229 VGFO15240 615 aaPredicted RBP22.79■■□□□ 1.24
PDGFRB-206ENST00000520229 SETD1AO15047 1707 aaKnown RBP22.79■■□□□ 1.24
PDGFRB-206ENST00000520229 SPATA31E1Q6ZUB1 1445 aa22.77■■□□□ 1.24
PDGFRB-206ENST00000520229 COL16A1Q07092 1604 aaPredicted RBP22.77■■□□□ 1.24
PDGFRB-206ENST00000520229 RGL3Q3MIN7 710 aa22.76■■□□□ 1.23
PDGFRB-206ENST00000520229 PPLO60437 1756 aa22.76■■□□□ 1.23
PDGFRB-206ENST00000520229 MSH6P52701 1360 aa22.75■■□□□ 1.23
PDGFRB-206ENST00000520229 RGS17Q9UGC6 210 aaPredicted RBP22.73■■□□□ 1.23
PDGFRB-206ENST00000520229 AMOTL2Q9Y2J4 779 aa22.73■■□□□ 1.23
PDGFRB-206ENST00000520229 PHLPP1O60346 1717 aa22.73■■□□□ 1.23
PDGFRB-206ENST00000520229 METP08581 1390 aa22.73■■□□□ 1.23
PDGFRB-206ENST00000520229 ANKRD30BQ9BXX2 1392 aa22.71■■□□□ 1.23
PDGFRB-206ENST00000520229 AHDC1Q5TGY3 1603 aaPredicted RBP22.71■■□□□ 1.23
PDGFRB-206ENST00000520229 C14orf37Q86TY3 774 aa22.69■■□□□ 1.22
PDGFRB-206ENST00000520229 SLAIN2Q9P270 581 aa22.68■■□□□ 1.22
PDGFRB-206ENST00000520229 IFT172Q9UG01 1749 aa22.68■■□□□ 1.22
PDGFRB-206ENST00000520229 ADGRF5Q8IZF2 1346 aa22.67■■□□□ 1.22
PDGFRB-206ENST00000520229 DCCP43146 1447 aa22.66■■□□□ 1.22
PDGFRB-206ENST00000520229 PRAG1Q86YV5 1406 aa22.66■■□□□ 1.22
PDGFRB-206ENST00000520229 NALCNQ8IZF0 1738 aa22.66■■□□□ 1.22
PDGFRB-206ENST00000520229 SHPRHQ149N8 1683 aa22.62■■□□□ 1.21
PDGFRB-206ENST00000520229 LRP6O75581 1613 aa22.61■■□□□ 1.21
PDGFRB-206ENST00000520229 NHSL1Q5SYE7 1610 aa22.61■■□□□ 1.21
PDGFRB-206ENST00000520229 MST1RQ04912 1400 aa22.61■■□□□ 1.21
PDGFRB-206ENST00000520229 C19orf44Q9H6X5 657 aa22.61■■□□□ 1.21
PDGFRB-206ENST00000520229 PIK3C2GO75747 1445 aa22.6■■□□□ 1.21
PDGFRB-206ENST00000520229 MYOM2P54296 1465 aa22.6■■□□□ 1.21
PDGFRB-206ENST00000520229 ADGRL3Q9HAR2 1447 aa22.59■■□□□ 1.21
PDGFRB-206ENST00000520229 PTCH1Q13635 1447 aa22.58■■□□□ 1.21
PDGFRB-206ENST00000520229 ASXL1Q8IXJ9 1541 aa22.58■■□□□ 1.21
PDGFRB-206ENST00000520229 ATF3P18847 181 aa22.58■■□□□ 1.21
PDGFRB-206ENST00000520229 CADPS2Q86UW7 1296 aa22.58■■□□□ 1.21
PDGFRB-206ENST00000520229 PHF23Q9BUL5 403 aaPredicted RBP22.57■■□□□ 1.2
PDGFRB-206ENST00000520229 JCADQ9P266 1359 aa22.57■■□□□ 1.2
PDGFRB-206ENST00000520229 LAMC1P11047 1609 aa22.56■■□□□ 1.2
PDGFRB-206ENST00000520229 NRXN1Q9ULB1 1477 aa22.55■■□□□ 1.2
PDGFRB-206ENST00000520229 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
PDGFRB-206ENST00000520229 ROBO2Q9HCK4 1378 aa22.54■■□□□ 1.2
PDGFRB-206ENST00000520229 BRINP3Q76B58 766 aa22.54■■□□□ 1.2
PDGFRB-206ENST00000520229 POTEAQ6S8J7 498 aa22.53■■□□□ 1.2
PDGFRB-206ENST00000520229 DCAF11Q8TEB1 546 aa22.51■■□□□ 1.19
PDGFRB-206ENST00000520229 STK26Q9P289 416 aa22.51■■□□□ 1.19
PDGFRB-206ENST00000520229 KDM2AQ9Y2K7 1162 aa22.51■■□□□ 1.19
PDGFRB-206ENST00000520229 LRPPRCP42704 1394 aaKnown RBP22.5■■□□□ 1.19
PDGFRB-206ENST00000520229 TMEM132EQ6IEE7 984 aa22.5■■□□□ 1.19
PDGFRB-206ENST00000520229 C14orf93Q9H972 538 aaKnown RBP22.5■■□□□ 1.19
PDGFRB-206ENST00000520229 CFAP70Q5T0N1 1121 aa22.49■■□□□ 1.19
PDGFRB-206ENST00000520229 TECPR2O15040 1411 aa22.48■■□□□ 1.19
PDGFRB-206ENST00000520229 STAC3Q96MF2 364 aa22.48■■□□□ 1.19
PDGFRB-206ENST00000520229 DHX57Q6P158 1386 aaKnown RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms