RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 PRG4Q92954 1404 aaPredicted RBP6.76□□□□□ -1.33
CPNE3-204ENST00000517862 FBXO3Q9UK99 471 aa6.75□□□□□ -1.33
CPNE3-204ENST00000517862 MAP3K4Q9Y6R4 1608 aa6.75□□□□□ -1.33
CPNE3-204ENST00000517862 DNMBPQ6XZF7 1577 aa6.74□□□□□ -1.33
CPNE3-204ENST00000517862 SETBP1Q9Y6X0 1596 aa6.74□□□□□ -1.33
CPNE3-204ENST00000517862 RAD54L2Q9Y4B4 1467 aa6.74□□□□□ -1.33
CPNE3-204ENST00000517862 PRDM2Q13029 1718 aa6.74□□□□□ -1.33
CPNE3-204ENST00000517862 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.74□□□□□ -1.33
CPNE3-204ENST00000517862 PREX1Q8TCU6 1659 aa6.74□□□□□ -1.33
CPNE3-204ENST00000517862 TOM1O60784 492 aa6.73□□□□□ -1.33
CPNE3-204ENST00000517862 POLA1P09884 1462 aaPredicted RBP6.73□□□□□ -1.33
CPNE3-204ENST00000517862 WDR97A6NE52 1622 aa6.72□□□□□ -1.33
CPNE3-204ENST00000517862 KIAA0586Q9BVV6 1533 aa6.72□□□□□ -1.33
CPNE3-204ENST00000517862 LAPTM4BQ86VI4 370 aa6.72□□□□□ -1.33
CPNE3-204ENST00000517862 ANO8Q9HCE9 1232 aaPredicted RBP6.72□□□□□ -1.33
CPNE3-204ENST00000517862 RABGEF1Q9UJ41 708 aa6.72□□□□□ -1.33
CPNE3-204ENST00000517862 PLB1Q6P1J6 1458 aa6.72□□□□□ -1.33
CPNE3-204ENST00000517862 ASXL2Q76L83 1435 aa6.71□□□□□ -1.34
CPNE3-204ENST00000517862 KRTAP4-8Q9BYQ9 185 aa6.71□□□□□ -1.34
CPNE3-204ENST00000517862 FAM187AA6NFU0 413 aa6.7□□□□□ -1.34
CPNE3-204ENST00000517862 TSR3Q9UJK0 312 aaKnown RBP6.7□□□□□ -1.34
CPNE3-204ENST00000517862 ZNF335Q9H4Z2 1342 aaPredicted RBP6.7□□□□□ -1.34
CPNE3-204ENST00000517862 SOGA1O94964 1423 aa6.69□□□□□ -1.34
CPNE3-204ENST00000517862 ZFRQ96KR1 1074 aaKnown RBP6.69□□□□□ -1.34
CPNE3-204ENST00000517862 XP32Q5T750 250 aa6.68□□□□□ -1.34
CPNE3-204ENST00000517862 TRIM52Q96A61 297 aa6.68□□□□□ -1.34
CPNE3-204ENST00000517862 PBRM1Q86U86 1689 aa6.68□□□□□ -1.34
CPNE3-204ENST00000517862 NUP160Q12769 1436 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 GRIN2AQ12879 1464 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 ST8SIA5O15466 376 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 TRIM67Q6ZTA4 783 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 FBXO22Q8NEZ5 403 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 HPS5Q9UPZ3 1129 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 CEP350Q5VT06 3117 aa6.67□□□□□ -1.34
CPNE3-204ENST00000517862 C11orf95C9JLR9 678 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-204ENST00000517862 GGCXP38435 758 aa6.66□□□□□ -1.34
CPNE3-204ENST00000517862 AAASQ9NRG9 546 aa6.66□□□□□ -1.34
CPNE3-204ENST00000517862 TJAP1Q5JTD0 557 aa6.65□□□□□ -1.34
CPNE3-204ENST00000517862 JPH4Q96JJ6 628 aa6.65□□□□□ -1.34
CPNE3-204ENST00000517862 EPRSP07814 1512 aaKnown RBP6.65□□□□□ -1.35
CPNE3-204ENST00000517862 PRR20EP86478 221 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 PRR20CP86479 221 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 PRR20DP86480 221 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 PRR20BP86481 221 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 PRR20AP86496 221 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 ZSCAN1Q8NBB4 408 aa6.64□□□□□ -1.35
CPNE3-204ENST00000517862 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.64□□□□□ -1.35
CPNE3-204ENST00000517862 VASPP50552 380 aaPredicted RBP6.63□□□□□ -1.35
CPNE3-204ENST00000517862 C1QTNF8P60827 252 aa6.63□□□□□ -1.35
CPNE3-204ENST00000517862 IL21Q9HBE4 155 aa6.63□□□□□ -1.35
CPNE3-204ENST00000517862 KIAA0556O60303 1618 aa6.62□□□□□ -1.35
CPNE3-204ENST00000517862 LRP5O75197 1615 aa6.62□□□□□ -1.35
CPNE3-204ENST00000517862 UHRF1BP1Q6BDS2 1440 aa6.62□□□□□ -1.35
CPNE3-204ENST00000517862 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-204ENST00000517862 FOSBP53539 338 aa6.62□□□□□ -1.35
CPNE3-204ENST00000517862 LRCH3Q96II8 777 aa6.62□□□□□ -1.35
CPNE3-204ENST00000517862 ZFP91Q96JP5 570 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-204ENST00000517862 KCTD17Q8N5Z5 321 aa6.61□□□□□ -1.35
CPNE3-204ENST00000517862 CUL7Q14999 1698 aa6.61□□□□□ -1.35
CPNE3-204ENST00000517862 PLPP6Q8IY26 295 aa6.6□□□□□ -1.35
CPNE3-204ENST00000517862 SETD1BQ9UPS6 1966 aaKnown RBP6.6□□□□□ -1.35
CPNE3-204ENST00000517862 ABCC2Q92887 1545 aa6.6□□□□□ -1.35
CPNE3-204ENST00000517862 FER1L4A9Z1Z3 1794 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.59□□□□□ -1.35
CPNE3-204ENST00000517862 PPP1R3GB7ZBB8 358 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 TERTO14746 1132 aaKnown RBP6.59□□□□□ -1.35
CPNE3-204ENST00000517862 PLCB2Q00722 1185 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 PROX2Q3B8N5 592 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 MTRQ99707 1265 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 GMPR2Q9P2T1 348 aaKnown RBP6.59□□□□□ -1.35
CPNE3-204ENST00000517862 TTC37Q6PGP7 1564 aa6.59□□□□□ -1.35
CPNE3-204ENST00000517862 RAPGEF6Q8TEU7 1601 aa6.58□□□□□ -1.36
CPNE3-204ENST00000517862 FOXK1P85037 733 aa6.58□□□□□ -1.36
CPNE3-204ENST00000517862 LCE2CQ5TA81 110 aa6.58□□□□□ -1.36
CPNE3-204ENST00000517862 ZDHHC16Q969W1 377 aa6.58□□□□□ -1.36
CPNE3-204ENST00000517862 SLC19A1P41440 591 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 CEBPAP49715 358 aaPredicted RBP6.57□□□□□ -1.36
CPNE3-204ENST00000517862 PPP4CP60510 307 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 KRTAP1-3Q8IUG1 177 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 PSMG3-AS1Q96PY0 264 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 KRTAP9-2Q9BYQ4 174 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 PTPRKQ15262 1439 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 NCOA1Q15788 1441 aa6.57□□□□□ -1.36
CPNE3-204ENST00000517862 MAGI3Q5TCQ9 1506 aa6.56□□□□□ -1.36
CPNE3-204ENST00000517862 VGFO15240 615 aaPredicted RBP6.56□□□□□ -1.36
CPNE3-204ENST00000517862 HAP1P54257 671 aaPredicted RBP6.56□□□□□ -1.36
CPNE3-204ENST00000517862 TMUB1Q9BVT8 246 aa6.56□□□□□ -1.36
CPNE3-204ENST00000517862 ADAM33Q9BZ11 813 aa6.56□□□□□ -1.36
CPNE3-204ENST00000517862 POGZQ7Z3K3 1410 aa6.56□□□□□ -1.36
CPNE3-204ENST00000517862 KRTAP9-6A0A140TA67 174 aa6.55□□□□□ -1.36
CPNE3-204ENST00000517862 RIOK3O14730 519 aaKnown RBP6.55□□□□□ -1.36
CPNE3-204ENST00000517862 SPOCK2Q92563 424 aa6.55□□□□□ -1.36
CPNE3-204ENST00000517862 ARAP3Q8WWN8 1544 aa6.55□□□□□ -1.36
CPNE3-204ENST00000517862 ALKQ9UM73 1620 aa6.54□□□□□ -1.36
CPNE3-204ENST00000517862 CD109Q6YHK3 1445 aa6.54□□□□□ -1.36
CPNE3-204ENST00000517862 PRELPP51888 382 aa6.54□□□□□ -1.36
CPNE3-204ENST00000517862 MLECQ14165 292 aa6.54□□□□□ -1.36
CPNE3-204ENST00000517862 ZNF598Q86UK7 904 aaKnown RBP6.54□□□□□ -1.36
CPNE3-204ENST00000517862 IFNLR1Q8IU57 520 aaPredicted RBP6.54□□□□□ -1.36
CPNE3-204ENST00000517862 CRIPAKQ8N1N5 446 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms