RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 SETD5Q9C0A6 1442 aa19.12■□□□□ 0.65
CLCN3-210ENST00000515420 RIMS2Q9UQ26 1411 aa19.11■□□□□ 0.65
CLCN3-210ENST00000515420 SLC4A1APQ9BWU0 796 aaKnown RBP19.11■□□□□ 0.65
CLCN3-210ENST00000515420 CLTCL1P53675 1640 aa19.11■□□□□ 0.65
CLCN3-210ENST00000515420 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.1■□□□□ 0.65
CLCN3-210ENST00000515420 KIF1BO60333 1816 aa19.09■□□□□ 0.65
CLCN3-210ENST00000515420 STRCP1A6NGW2 1772 aa19.09■□□□□ 0.65
CLCN3-210ENST00000515420 PLEKHG1Q9ULL1 1385 aa19.09■□□□□ 0.65
CLCN3-210ENST00000515420 CHGAP10645 457 aaKnown RBP19.06■□□□□ 0.64
CLCN3-210ENST00000515420 DIP2AQ14689 1571 aa19.05■□□□□ 0.64
CLCN3-210ENST00000515420 PPP1R15AO75807 674 aaPredicted RBP19.04■□□□□ 0.64
CLCN3-210ENST00000515420 RAB3GAP2Q9H2M9 1393 aa19.04■□□□□ 0.64
CLCN3-210ENST00000515420 NWD1Q149M9 1564 aa19.02■□□□□ 0.64
CLCN3-210ENST00000515420 LRRC7Q96NW7 1537 aa19.02■□□□□ 0.64
CLCN3-210ENST00000515420 MPHOSPH9Q99550 1183 aa19.02■□□□□ 0.64
CLCN3-210ENST00000515420 HRCP23327 699 aa19.01■□□□□ 0.63
CLCN3-210ENST00000515420 NKTRP30414 1462 aaKnown RBP19■□□□□ 0.63
CLCN3-210ENST00000515420 CHD2O14647 1828 aaKnown RBP19■□□□□ 0.63
CLCN3-210ENST00000515420 NEXMIFQ5QGS0 1516 aa19■□□□□ 0.63
CLCN3-210ENST00000515420 SLC26A8Q96RN1 970 aa18.99■□□□□ 0.63
CLCN3-210ENST00000515420 SETBP1Q9Y6X0 1596 aa18.98■□□□□ 0.63
CLCN3-210ENST00000515420 KCNA6P17658 529 aa18.98■□□□□ 0.63
CLCN3-210ENST00000515420 TBX22Q9Y458 520 aa18.98■□□□□ 0.63
CLCN3-210ENST00000515420 CCDC144AA2RUR9 1427 aa18.98■□□□□ 0.63
CLCN3-210ENST00000515420 ADAMTS13Q76LX8 1427 aa18.98■□□□□ 0.63
CLCN3-210ENST00000515420 PIK3R4Q99570 1358 aa18.97■□□□□ 0.63
CLCN3-210ENST00000515420 ZNF326Q5BKZ1 582 aaKnown RBP18.97■□□□□ 0.63
CLCN3-210ENST00000515420 BCANQ96GW7 911 aa18.97■□□□□ 0.63
CLCN3-210ENST00000515420 XIRP1Q702N8 1843 aaKnown RBP18.97■□□□□ 0.63
CLCN3-210ENST00000515420 NRXN3Q9Y4C0 1643 aa18.96■□□□□ 0.63
CLCN3-210ENST00000515420 UBAP1LF5GYI3 381 aa18.95■□□□□ 0.62
CLCN3-210ENST00000515420 RPGRIP1LQ68CZ1 1315 aa18.95■□□□□ 0.62
CLCN3-210ENST00000515420 PPLO60437 1756 aa18.94■□□□□ 0.62
CLCN3-210ENST00000515420 TOM1O60784 492 aa18.93■□□□□ 0.62
CLCN3-210ENST00000515420 NUTM2DQ5VT03 806 aaPredicted RBP18.92■□□□□ 0.62
CLCN3-210ENST00000515420 POTEDQ86YR6 584 aa18.91■□□□□ 0.62
CLCN3-210ENST00000515420 SPATA31E1Q6ZUB1 1445 aa18.91■□□□□ 0.62
CLCN3-210ENST00000515420 ALKQ9UM73 1620 aa18.9■□□□□ 0.62
CLCN3-210ENST00000515420 VGFO15240 615 aaPredicted RBP18.9■□□□□ 0.62
CLCN3-210ENST00000515420 TMEM94Q12767 1356 aa18.89■□□□□ 0.61
CLCN3-210ENST00000515420 NCOA3Q9Y6Q9 1424 aa18.89■□□□□ 0.61
CLCN3-210ENST00000515420 IFT172Q9UG01 1749 aa18.88■□□□□ 0.61
CLCN3-210ENST00000515420 PROSER2Q86WR7 435 aaPredicted RBP18.87■□□□□ 0.61
CLCN3-210ENST00000515420 XRN1Q8IZH2 1706 aaKnown RBP18.87■□□□□ 0.61
CLCN3-210ENST00000515420 SETD1AO15047 1707 aaKnown RBP18.86■□□□□ 0.61
CLCN3-210ENST00000515420 ANKRD30BQ9BXX2 1392 aa18.85■□□□□ 0.61
CLCN3-210ENST00000515420 PTPRUQ92729 1446 aa18.83■□□□□ 0.61
CLCN3-210ENST00000515420 METP08581 1390 aa18.81■□□□□ 0.6
CLCN3-210ENST00000515420 MSH6P52701 1360 aa18.81■□□□□ 0.6
CLCN3-210ENST00000515420 AMOTL2Q9Y2J4 779 aa18.81■□□□□ 0.6
CLCN3-210ENST00000515420 PRAG1Q86YV5 1406 aa18.81■□□□□ 0.6
CLCN3-210ENST00000515420 PIP4K2BP78356 416 aa18.79■□□□□ 0.6
CLCN3-210ENST00000515420 MYOM2P54296 1465 aa18.78■□□□□ 0.6
CLCN3-210ENST00000515420 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
CLCN3-210ENST00000515420 RGL3Q3MIN7 710 aa18.78■□□□□ 0.6
CLCN3-210ENST00000515420 PIK3C2GO75747 1445 aa18.77■□□□□ 0.6
CLCN3-210ENST00000515420 NRXN1Q9ULB1 1477 aa18.77■□□□□ 0.59
CLCN3-210ENST00000515420 DCCP43146 1447 aa18.76■□□□□ 0.59
CLCN3-210ENST00000515420 PTCH1Q13635 1447 aa18.76■□□□□ 0.59
CLCN3-210ENST00000515420 FAM135BQ49AJ0 1406 aa18.76■□□□□ 0.59
CLCN3-210ENST00000515420 ADGRF5Q8IZF2 1346 aa18.75■□□□□ 0.59
CLCN3-210ENST00000515420 LAMC1P11047 1609 aa18.75■□□□□ 0.59
CLCN3-210ENST00000515420 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.75■□□□□ 0.59
CLCN3-210ENST00000515420 RBM33Q96EV2 1170 aaKnown RBP18.74■□□□□ 0.59
CLCN3-210ENST00000515420 C19orf44Q9H6X5 657 aa18.74■□□□□ 0.59
CLCN3-210ENST00000515420 STAC3Q96MF2 364 aa18.72■□□□□ 0.59
CLCN3-210ENST00000515420 ROBO1Q9Y6N7 1651 aa18.72■□□□□ 0.59
CLCN3-210ENST00000515420 HSPA1LP34931 641 aa18.71■□□□□ 0.59
CLCN3-210ENST00000515420 C14orf37Q86TY3 774 aa18.71■□□□□ 0.59
CLCN3-210ENST00000515420 CADPS2Q86UW7 1296 aa18.71■□□□□ 0.59
CLCN3-210ENST00000515420 TECPR2O15040 1411 aa18.7■□□□□ 0.58
CLCN3-210ENST00000515420 KNDC1Q76NI1 1749 aa18.7■□□□□ 0.58
CLCN3-210ENST00000515420 ADGRL3Q9HAR2 1447 aa18.7■□□□□ 0.58
CLCN3-210ENST00000515420 NALCNQ8IZF0 1738 aa18.69■□□□□ 0.58
CLCN3-210ENST00000515420 SLAIN2Q9P270 581 aa18.69■□□□□ 0.58
CLCN3-210ENST00000515420 ASXL1Q8IXJ9 1541 aa18.69■□□□□ 0.58
CLCN3-210ENST00000515420 ATF3P18847 181 aa18.67■□□□□ 0.58
CLCN3-210ENST00000515420 TRIM26Q12899 539 aaPredicted RBP18.67■□□□□ 0.58
CLCN3-210ENST00000515420 LRPPRCP42704 1394 aaKnown RBP18.67■□□□□ 0.58
CLCN3-210ENST00000515420 ROBO2Q9HCK4 1378 aa18.67■□□□□ 0.58
CLCN3-210ENST00000515420 C14orf93Q9H972 538 aaKnown RBP18.66■□□□□ 0.58
CLCN3-210ENST00000515420 ABCC11Q96J66 1382 aa18.66■□□□□ 0.58
CLCN3-210ENST00000515420 DHX57Q6P158 1386 aaKnown RBP18.63■□□□□ 0.57
CLCN3-210ENST00000515420 YTHDC2Q9H6S0 1430 aaKnown RBP18.63■□□□□ 0.57
CLCN3-210ENST00000515420 MST1RQ04912 1400 aa18.62■□□□□ 0.57
CLCN3-210ENST00000515420 DCAF11Q8TEB1 546 aa18.61■□□□□ 0.57
CLCN3-210ENST00000515420 PHLPP1O60346 1717 aa18.6■□□□□ 0.57
CLCN3-210ENST00000515420 AHDC1Q5TGY3 1603 aaPredicted RBP18.6■□□□□ 0.57
CLCN3-210ENST00000515420 CDC42BPGQ6DT37 1551 aa18.6■□□□□ 0.57
CLCN3-210ENST00000515420 SIRT1Q96EB6 747 aa18.6■□□□□ 0.57
CLCN3-210ENST00000515420 ADGRB1O14514 1584 aa18.59■□□□□ 0.57
CLCN3-210ENST00000515420 CFAP70Q5T0N1 1121 aa18.59■□□□□ 0.57
CLCN3-210ENST00000515420 DLC1Q96QB1 1528 aa18.59■□□□□ 0.57
CLCN3-210ENST00000515420 TMEM132EQ6IEE7 984 aa18.58■□□□□ 0.56
CLCN3-210ENST00000515420 KIAA1210Q9ULL0 1709 aa18.57■□□□□ 0.56
CLCN3-210ENST00000515420 COL16A1Q07092 1604 aaPredicted RBP18.57■□□□□ 0.56
CLCN3-210ENST00000515420 MED1Q15648 1581 aaPredicted RBP18.57■□□□□ 0.56
CLCN3-210ENST00000515420 STK26Q9P289 416 aa18.56■□□□□ 0.56
CLCN3-210ENST00000515420 NHSL1Q5SYE7 1610 aa18.56■□□□□ 0.56
CLCN3-210ENST00000515420 C1orf167Q5SNV9 1468 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms