RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 POLR1AO95602 1720 aaPredicted RBP22.56■■□□□ 1.2
SQSTM1-214ENST00000512234 ZFYVE9O95405 1425 aa22.55■■□□□ 1.2
SQSTM1-214ENST00000512234 BCANQ96GW7 911 aa22.55■■□□□ 1.2
SQSTM1-214ENST00000512234 DMRT2Q9Y5R5 561 aa22.55■■□□□ 1.2
SQSTM1-214ENST00000512234 PPP1R15AO75807 674 aaPredicted RBP22.54■■□□□ 1.2
SQSTM1-214ENST00000512234 SLC26A8Q96RN1 970 aa22.54■■□□□ 1.2
SQSTM1-214ENST00000512234 KDM5AP29375 1690 aaKnown RBP22.53■■□□□ 1.2
SQSTM1-214ENST00000512234 ZNF335Q9H4Z2 1342 aaPredicted RBP22.53■■□□□ 1.2
SQSTM1-214ENST00000512234 DHX57Q6P158 1386 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-214ENST00000512234 KIF1BO60333 1816 aa22.5■■□□□ 1.19
SQSTM1-214ENST00000512234 MED14O60244 1454 aa22.5■■□□□ 1.19
SQSTM1-214ENST00000512234 SIN3AQ96ST3 1273 aa22.49■■□□□ 1.19
SQSTM1-214ENST00000512234 SPATA31E1Q6ZUB1 1445 aa22.48■■□□□ 1.19
SQSTM1-214ENST00000512234 IQGAP1P46940 1657 aa22.48■■□□□ 1.19
SQSTM1-214ENST00000512234 NEXMIFQ5QGS0 1516 aa22.46■■□□□ 1.19
SQSTM1-214ENST00000512234 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.45■■□□□ 1.18
SQSTM1-214ENST00000512234 NEUROD1Q13562 356 aa22.44■■□□□ 1.18
SQSTM1-214ENST00000512234 HDGFP51858 240 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-214ENST00000512234 PLEKHG1Q9ULL1 1385 aa22.43■■□□□ 1.18
SQSTM1-214ENST00000512234 ADGRF5Q8IZF2 1346 aa22.43■■□□□ 1.18
SQSTM1-214ENST00000512234 KDM2AQ9Y2K7 1162 aa22.4■■□□□ 1.18
SQSTM1-214ENST00000512234 RBM33Q96EV2 1170 aaKnown RBP22.39■■□□□ 1.17
SQSTM1-214ENST00000512234 ADAMTS13Q76LX8 1427 aa22.39■■□□□ 1.17
SQSTM1-214ENST00000512234 RPGRIP1LQ68CZ1 1315 aa22.37■■□□□ 1.17
SQSTM1-214ENST00000512234 LTBP4Q8N2S1 1624 aa22.37■■□□□ 1.17
SQSTM1-214ENST00000512234 VGFO15240 615 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-214ENST00000512234 DCAF11Q8TEB1 546 aa22.36■■□□□ 1.17
SQSTM1-214ENST00000512234 STRCP1A6NGW2 1772 aa22.36■■□□□ 1.17
SQSTM1-214ENST00000512234 PPLO60437 1756 aa22.36■■□□□ 1.17
SQSTM1-214ENST00000512234 NRXN3Q9Y4C0 1643 aa22.34■■□□□ 1.17
SQSTM1-214ENST00000512234 CERKQ8TCT0 537 aa22.34■■□□□ 1.17
SQSTM1-214ENST00000512234 METP08581 1390 aa22.33■■□□□ 1.17
SQSTM1-214ENST00000512234 TBX22Q9Y458 520 aa22.33■■□□□ 1.17
SQSTM1-214ENST00000512234 IFT172Q9UG01 1749 aa22.31■■□□□ 1.16
SQSTM1-214ENST00000512234 PTPRUQ92729 1446 aa22.29■■□□□ 1.16
SQSTM1-214ENST00000512234 KCNA6P17658 529 aa22.28■■□□□ 1.16
SQSTM1-214ENST00000512234 TMEM132EQ6IEE7 984 aa22.28■■□□□ 1.16
SQSTM1-214ENST00000512234 SETBP1Q9Y6X0 1596 aa22.28■■□□□ 1.16
SQSTM1-214ENST00000512234 CFAP70Q5T0N1 1121 aa22.28■■□□□ 1.16
SQSTM1-214ENST00000512234 L3MBTL2Q969R5 705 aa22.28■■□□□ 1.16
SQSTM1-214ENST00000512234 AMOTL2Q9Y2J4 779 aa22.26■■□□□ 1.15
SQSTM1-214ENST00000512234 ALKQ9UM73 1620 aa22.26■■□□□ 1.15
SQSTM1-214ENST00000512234 PROSER2Q86WR7 435 aaPredicted RBP22.24■■□□□ 1.15
SQSTM1-214ENST00000512234 PIK3C2GO75747 1445 aa22.23■■□□□ 1.15
SQSTM1-214ENST00000512234 STK26Q9P289 416 aa22.23■■□□□ 1.15
SQSTM1-214ENST00000512234 LRRC7Q96NW7 1537 aa22.23■■□□□ 1.15
SQSTM1-214ENST00000512234 CCER1Q8TC90 406 aaPredicted RBP22.23■■□□□ 1.15
SQSTM1-214ENST00000512234 CHD2O14647 1828 aaKnown RBP22.21■■□□□ 1.15
SQSTM1-214ENST00000512234 DIP2AQ14689 1571 aa22.2■■□□□ 1.15
SQSTM1-214ENST00000512234 SETD1AO15047 1707 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-214ENST00000512234 MYOM2P54296 1465 aa22.2■■□□□ 1.14
SQSTM1-214ENST00000512234 NRXN1Q9ULB1 1477 aa22.2■■□□□ 1.14
SQSTM1-214ENST00000512234 C14orf93Q9H972 538 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-214ENST00000512234 TMEM94Q12767 1356 aa22.19■■□□□ 1.14
SQSTM1-214ENST00000512234 CPS1P31327 1500 aa22.19■■□□□ 1.14
SQSTM1-214ENST00000512234 ASXL1Q8IXJ9 1541 aa22.18■■□□□ 1.14
SQSTM1-214ENST00000512234 NWD1Q149M9 1564 aa22.17■■□□□ 1.14
SQSTM1-214ENST00000512234 PIK3R4Q99570 1358 aa22.15■■□□□ 1.14
SQSTM1-214ENST00000512234 XIRP1Q702N8 1843 aaKnown RBP22.14■■□□□ 1.14
SQSTM1-214ENST00000512234 ROBO2Q9HCK4 1378 aa22.14■■□□□ 1.13
SQSTM1-214ENST00000512234 NBPF1Q3BBV0 1214 aa22.14■■□□□ 1.13
SQSTM1-214ENST00000512234 UBAP1LF5GYI3 381 aa22.13■■□□□ 1.13
SQSTM1-214ENST00000512234 WAPLQ7Z5K2 1190 aa22.13■■□□□ 1.13
SQSTM1-214ENST00000512234 TONSLQ96HA7 1378 aa22.12■■□□□ 1.13
SQSTM1-214ENST00000512234 NBPF8Q3BBV2 869 aa22.12■■□□□ 1.13
SQSTM1-214ENST00000512234 C14orf37Q86TY3 774 aa22.12■■□□□ 1.13
SQSTM1-214ENST00000512234 XRN1Q8IZH2 1706 aaKnown RBP22.12■■□□□ 1.13
SQSTM1-214ENST00000512234 PRAG1Q86YV5 1406 aa22.11■■□□□ 1.13
SQSTM1-214ENST00000512234 NKTRP30414 1462 aaKnown RBP22.11■■□□□ 1.13
SQSTM1-214ENST00000512234 PIP4K2BP78356 416 aa22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 ILDR1Q86SU0 546 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 PLEKHH1Q9ULM0 1364 aa22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 YTHDC2Q9H6S0 1430 aaKnown RBP22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 SAFB2Q14151 953 aaKnown RBP eCLIP22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 TRAK1Q9UPV9 953 aa22.09■■□□□ 1.13
SQSTM1-214ENST00000512234 SCAF1Q9H7N4 1312 aaKnown RBP22.08■■□□□ 1.12
SQSTM1-214ENST00000512234 LRPPRCP42704 1394 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-214ENST00000512234 ADGRB1O14514 1584 aa22.06■■□□□ 1.12
SQSTM1-214ENST00000512234 FBXO41Q8TF61 875 aa22.06■■□□□ 1.12
SQSTM1-214ENST00000512234 STAC3Q96MF2 364 aa22.06■■□□□ 1.12
SQSTM1-214ENST00000512234 PRAM1Q96QH2 718 aa22.03■■□□□ 1.12
SQSTM1-214ENST00000512234 ABCC11Q96J66 1382 aa22.02■■□□□ 1.12
SQSTM1-214ENST00000512234 IQSEC2Q5JU85 1478 aa22.02■■□□□ 1.12
SQSTM1-214ENST00000512234 LAMC1P11047 1609 aa22.01■■□□□ 1.11
SQSTM1-214ENST00000512234 MSH6P52701 1360 aa22.01■■□□□ 1.11
SQSTM1-214ENST00000512234 PTCH1Q13635 1447 aa22■■□□□ 1.11
SQSTM1-214ENST00000512234 CLSPNQ9HAW4 1339 aa22■■□□□ 1.11
SQSTM1-214ENST00000512234 TOM1O60784 492 aa22■■□□□ 1.11
SQSTM1-214ENST00000512234 C19orf44Q9H6X5 657 aa22■■□□□ 1.11
SQSTM1-214ENST00000512234 NUTM2FA1L443 756 aa21.98■■□□□ 1.11
SQSTM1-214ENST00000512234 TECPR2O15040 1411 aa21.98■■□□□ 1.11
SQSTM1-214ENST00000512234 HIRIP3Q9BW71 556 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-214ENST00000512234 POGKQ9P215 609 aa21.97■■□□□ 1.11
SQSTM1-214ENST00000512234 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-214ENST00000512234 NALCNQ8IZF0 1738 aa21.97■■□□□ 1.11
SQSTM1-214ENST00000512234 ATF3P18847 181 aa21.96■■□□□ 1.11
SQSTM1-214ENST00000512234 TRPM1Q7Z4N2 1603 aa21.96■■□□□ 1.11
SQSTM1-214ENST00000512234 ADGRL3Q9HAR2 1447 aa21.95■■□□□ 1.1
SQSTM1-214ENST00000512234 ROCK2O75116 1388 aaKnown RBP21.95■■□□□ 1.1
SQSTM1-214ENST00000512234 SLAIN2Q9P270 581 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms