RNA–Protein interactions for RNA: ENST00000509637.6

RAB40C-202, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-202ENST00000509637 PHF23Q9BUL5 403 aaPredicted RBP24.74■■□□□ 1.55
RAB40C-202ENST00000509637 NWD1Q149M9 1564 aa24.73■■□□□ 1.55
RAB40C-202ENST00000509637 RPRD2Q5VT52 1461 aaKnown RBP24.72■■□□□ 1.55
RAB40C-202ENST00000509637 TMEM131LA2VDJ0 1609 aa24.72■■□□□ 1.55
RAB40C-202ENST00000509637 RIMS2Q9UQ26 1411 aa24.7■■□□□ 1.55
RAB40C-202ENST00000509637 GCC2Q8IWJ2 1684 aa24.7■■□□□ 1.54
RAB40C-202ENST00000509637 UNC13BO14795 1591 aa24.69■■□□□ 1.54
RAB40C-202ENST00000509637 PLEKHG1Q9ULL1 1385 aa24.68■■□□□ 1.54
RAB40C-202ENST00000509637 NUTM2DQ5VT03 806 aaPredicted RBP24.68■■□□□ 1.54
RAB40C-202ENST00000509637 E9PCH4 1651 aa24.68■■□□□ 1.54
RAB40C-202ENST00000509637 ROBO1Q9Y6N7 1651 aa24.68■■□□□ 1.54
RAB40C-202ENST00000509637 CHD2O14647 1828 aaKnown RBP24.67■■□□□ 1.54
RAB40C-202ENST00000509637 NKTRP30414 1462 aaKnown RBP24.65■■□□□ 1.54
RAB40C-202ENST00000509637 ADAMTS13Q76LX8 1427 aa24.65■■□□□ 1.54
RAB40C-202ENST00000509637 PPARGC1BQ86YN6 1023 aaKnown RBP24.65■■□□□ 1.54
RAB40C-202ENST00000509637 BCANQ96GW7 911 aa24.65■■□□□ 1.54
RAB40C-202ENST00000509637 POTEAQ6S8J7 498 aa24.64■■□□□ 1.54
RAB40C-202ENST00000509637 TBX22Q9Y458 520 aa24.62■■□□□ 1.53
RAB40C-202ENST00000509637 ROCK1Q13464 1354 aa24.62■■□□□ 1.53
RAB40C-202ENST00000509637 CHGAP10645 457 aaKnown RBP24.61■■□□□ 1.53
RAB40C-202ENST00000509637 SLAIN2Q9P270 581 aa24.61■■□□□ 1.53
RAB40C-202ENST00000509637 IQGAP3Q86VI3 1631 aa24.59■■□□□ 1.53
RAB40C-202ENST00000509637 MSH6P52701 1360 aa24.57■■□□□ 1.52
RAB40C-202ENST00000509637 PPP1R15AO75807 674 aaPredicted RBP24.57■■□□□ 1.52
RAB40C-202ENST00000509637 ITGAEP38570 1179 aa24.57■■□□□ 1.52
RAB40C-202ENST00000509637 PTPRUQ92729 1446 aa24.57■■□□□ 1.52
RAB40C-202ENST00000509637 NUP155O75694 1391 aa24.55■■□□□ 1.52
RAB40C-202ENST00000509637 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.52■■□□□ 1.52
RAB40C-202ENST00000509637 HDGFP51858 240 aaKnown RBP24.51■■□□□ 1.51
RAB40C-202ENST00000509637 PHLPP1O60346 1717 aa24.5■■□□□ 1.51
RAB40C-202ENST00000509637 COL16A1Q07092 1604 aaPredicted RBP24.49■■□□□ 1.51
RAB40C-202ENST00000509637 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.48■■□□□ 1.51
RAB40C-202ENST00000509637 NRXN3Q9Y4C0 1643 aa24.47■■□□□ 1.51
RAB40C-202ENST00000509637 NCOA3Q9Y6Q9 1424 aa24.47■■□□□ 1.51
RAB40C-202ENST00000509637 AMOTL2Q9Y2J4 779 aa24.47■■□□□ 1.51
RAB40C-202ENST00000509637 PIK3R4Q99570 1358 aa24.44■■□□□ 1.5
RAB40C-202ENST00000509637 JCADQ9P266 1359 aa24.44■■□□□ 1.5
RAB40C-202ENST00000509637 LRP6O75581 1613 aa24.44■■□□□ 1.5
RAB40C-202ENST00000509637 C19orf44Q9H6X5 657 aa24.44■■□□□ 1.5
RAB40C-202ENST00000509637 DIP2AQ14689 1571 aa24.43■■□□□ 1.5
RAB40C-202ENST00000509637 METP08581 1390 aa24.41■■□□□ 1.5
RAB40C-202ENST00000509637 C14orf37Q86TY3 774 aa24.4■■□□□ 1.5
RAB40C-202ENST00000509637 SPHKAPQ2M3C7 1700 aa24.39■■□□□ 1.5
RAB40C-202ENST00000509637 BRINP3Q76B58 766 aa24.39■■□□□ 1.49
RAB40C-202ENST00000509637 TRPM2O94759 1503 aa24.39■■□□□ 1.49
RAB40C-202ENST00000509637 XRN1Q8IZH2 1706 aaKnown RBP24.38■■□□□ 1.49
RAB40C-202ENST00000509637 CADPS2Q86UW7 1296 aa24.38■■□□□ 1.49
RAB40C-202ENST00000509637 SETBP1Q9Y6X0 1596 aa24.37■■□□□ 1.49
RAB40C-202ENST00000509637 AHDC1Q5TGY3 1603 aaPredicted RBP24.37■■□□□ 1.49
RAB40C-202ENST00000509637 SETD1AO15047 1707 aaKnown RBP24.36■■□□□ 1.49
RAB40C-202ENST00000509637 CLTCL1P53675 1640 aa24.35■■□□□ 1.49
RAB40C-202ENST00000509637 ATF3P18847 181 aa24.35■■□□□ 1.49
RAB40C-202ENST00000509637 NAIPQ13075 1403 aa24.34■■□□□ 1.49
RAB40C-202ENST00000509637 NEXMIFQ5QGS0 1516 aa24.32■■□□□ 1.48
RAB40C-202ENST00000509637 ZNF326Q5BKZ1 582 aaKnown RBP24.32■■□□□ 1.48
RAB40C-202ENST00000509637 RRBP1Q9P2E9 1410 aaKnown RBP24.32■■□□□ 1.48
RAB40C-202ENST00000509637 MST1RQ04912 1400 aa24.31■■□□□ 1.48
RAB40C-202ENST00000509637 DDX17Q92841 729 aaKnown RBP24.31■■□□□ 1.48
RAB40C-202ENST00000509637 SPATA31A6Q5VVP1 1343 aa24.3■■□□□ 1.48
RAB40C-202ENST00000509637 SHPRHQ149N8 1683 aa24.29■■□□□ 1.48
RAB40C-202ENST00000509637 ASXL1Q8IXJ9 1541 aa24.27■■□□□ 1.48
RAB40C-202ENST00000509637 DCCP43146 1447 aa24.27■■□□□ 1.48
RAB40C-202ENST00000509637 NUTM2BA6NNL0 878 aaPredicted RBP24.23■■□□□ 1.47
RAB40C-202ENST00000509637 NUTM2EB1AL46 878 aaPredicted RBP24.23■■□□□ 1.47
RAB40C-202ENST00000509637 NUTM2AQ8IVF1 878 aaPredicted RBP24.23■■□□□ 1.47
RAB40C-202ENST00000509637 NALCNQ8IZF0 1738 aa24.22■■□□□ 1.47
RAB40C-202ENST00000509637 NHSL1Q5SYE7 1610 aa24.22■■□□□ 1.47
RAB40C-202ENST00000509637 SETD5Q9C0A6 1442 aa24.22■■□□□ 1.47
RAB40C-202ENST00000509637 ADGRL3Q9HAR2 1447 aa24.22■■□□□ 1.47
RAB40C-202ENST00000509637 MEX3CQ5U5Q3 659 aaKnown RBP24.2■■□□□ 1.46
RAB40C-202ENST00000509637 ROBO2Q9HCK4 1378 aa24.19■■□□□ 1.46
RAB40C-202ENST00000509637 TRIM52Q96A61 297 aa24.19■■□□□ 1.46
RAB40C-202ENST00000509637 KIF1BO60333 1816 aa24.18■■□□□ 1.46
RAB40C-202ENST00000509637 ZNF772Q68DY9 489 aaPredicted RBP24.17■■□□□ 1.46
RAB40C-202ENST00000509637 FOXD1Q16676 465 aa24.16■■□□□ 1.46
RAB40C-202ENST00000509637 UPF1Q92900 1129 aaKnown RBP eCLIP24.16■■□□□ 1.46
RAB40C-202ENST00000509637 PNPLA6Q8IY17 1366 aa24.16■■□□□ 1.46
RAB40C-202ENST00000509637 C1orf167Q5SNV9 1468 aa24.15■■□□□ 1.46
RAB40C-202ENST00000509637 ORAI2Q96SN7 254 aa24.15■■□□□ 1.46
RAB40C-202ENST00000509637 HFM1A2PYH4 1435 aa24.15■■□□□ 1.46
RAB40C-202ENST00000509637 AFF2P51816 1311 aa24.14■■□□□ 1.46
RAB40C-202ENST00000509637 LRRC59Q96AG4 307 aaKnown RBP24.12■■□□□ 1.45
RAB40C-202ENST00000509637 SLC4A1APQ9BWU0 796 aaKnown RBP24.11■■□□□ 1.45
RAB40C-202ENST00000509637 VGFO15240 615 aaPredicted RBP24.1■■□□□ 1.45
RAB40C-202ENST00000509637 RXRBP28702 533 aa24.1■■□□□ 1.45
RAB40C-202ENST00000509637 PTCH1Q13635 1447 aa24.1■■□□□ 1.45
RAB40C-202ENST00000509637 PPLO60437 1756 aa24.08■■□□□ 1.45
RAB40C-202ENST00000509637 PRAG1Q86YV5 1406 aa24.08■■□□□ 1.44
RAB40C-202ENST00000509637 ADGRF5Q8IZF2 1346 aa24.08■■□□□ 1.44
RAB40C-202ENST00000509637 LAMC1P11047 1609 aa24.07■■□□□ 1.44
RAB40C-202ENST00000509637 SOS2Q07890 1332 aaPredicted RBP24.07■■□□□ 1.44
RAB40C-202ENST00000509637 RPGRIP1LQ68CZ1 1315 aa24.07■■□□□ 1.44
RAB40C-202ENST00000509637 C8orf37Q96NL8 207 aa24.06■■□□□ 1.44
RAB40C-202ENST00000509637 QTRT2Q9H974 415 aaKnown RBP24.03■■□□□ 1.44
RAB40C-202ENST00000509637 CDK12Q9NYV4 1490 aaPredicted RBP24.02■■□□□ 1.44
RAB40C-202ENST00000509637 ADAMTS2O95450 1211 aa24.02■■□□□ 1.44
RAB40C-202ENST00000509637 RGS12O14924 1447 aa24.01■■□□□ 1.43
RAB40C-202ENST00000509637 SPATA31E1Q6ZUB1 1445 aa24.01■■□□□ 1.43
RAB40C-202ENST00000509637 RGL3Q3MIN7 710 aa23.99■■□□□ 1.43
RAB40C-202ENST00000509637 WAPLQ7Z5K2 1190 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms