RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 RIMS2Q9UQ26 1411 aa27.14■■□□□ 1.93
TPM3-220ENST00000509601 ALKQ9UM73 1620 aa27.13■■□□□ 1.93
TPM3-220ENST00000509601 SENP3Q9H4L4 574 aaPredicted RBP27.12■■□□□ 1.93
TPM3-220ENST00000509601 BCANQ96GW7 911 aa27.11■■□□□ 1.93
TPM3-220ENST00000509601 SCAF1Q9H7N4 1312 aaKnown RBP27.11■■□□□ 1.93
TPM3-220ENST00000509601 PLEKHG1Q9ULL1 1385 aa27.1■■□□□ 1.93
TPM3-220ENST00000509601 HSPA1LP34931 641 aa27.09■■□□□ 1.93
TPM3-220ENST00000509601 NUTM2DQ5VT03 806 aaPredicted RBP27.09■■□□□ 1.93
TPM3-220ENST00000509601 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.09■■□□□ 1.93
TPM3-220ENST00000509601 HFM1A2PYH4 1435 aa27.08■■□□□ 1.93
TPM3-220ENST00000509601 PPP1R15AO75807 674 aaPredicted RBP27.07■■□□□ 1.92
TPM3-220ENST00000509601 TBX22Q9Y458 520 aa27.06■■□□□ 1.92
TPM3-220ENST00000509601 PROSER2Q86WR7 435 aaPredicted RBP27.04■■□□□ 1.92
TPM3-220ENST00000509601 TRIM52Q96A61 297 aa27.04■■□□□ 1.92
TPM3-220ENST00000509601 XIRP1Q702N8 1843 aaKnown RBP27.04■■□□□ 1.92
TPM3-220ENST00000509601 TMEM94Q12767 1356 aa27.02■■□□□ 1.92
TPM3-220ENST00000509601 DISP3Q9P2K9 1392 aa27.02■■□□□ 1.92
TPM3-220ENST00000509601 RBM33Q96EV2 1170 aaKnown RBP27.02■■□□□ 1.92
TPM3-220ENST00000509601 ADAMTS13Q76LX8 1427 aa26.99■■□□□ 1.91
TPM3-220ENST00000509601 SPHKAPQ2M3C7 1700 aa26.99■■□□□ 1.91
TPM3-220ENST00000509601 SLC4A1APQ9BWU0 796 aaKnown RBP26.96■■□□□ 1.91
TPM3-220ENST00000509601 NWD1Q149M9 1564 aa26.95■■□□□ 1.9
TPM3-220ENST00000509601 ZNF326Q5BKZ1 582 aaKnown RBP26.94■■□□□ 1.9
TPM3-220ENST00000509601 CHD2O14647 1828 aaKnown RBP26.94■■□□□ 1.9
TPM3-220ENST00000509601 NKTRP30414 1462 aaKnown RBP26.93■■□□□ 1.9
TPM3-220ENST00000509601 ILDR2Q71H61 639 aa26.92■■□□□ 1.9
TPM3-220ENST00000509601 TRPM2O94759 1503 aa26.91■■□□□ 1.9
TPM3-220ENST00000509601 CLTCL1P53675 1640 aa26.9■■□□□ 1.9
TPM3-220ENST00000509601 PIK3R4Q99570 1358 aa26.89■■□□□ 1.9
TPM3-220ENST00000509601 FOXD1Q16676 465 aa26.87■■□□□ 1.89
TPM3-220ENST00000509601 FAM135BQ49AJ0 1406 aa26.87■■□□□ 1.89
TPM3-220ENST00000509601 AMOTL2Q9Y2J4 779 aa26.86■■□□□ 1.89
TPM3-220ENST00000509601 PTPRUQ92729 1446 aa26.85■■□□□ 1.89
TPM3-220ENST00000509601 DIP2AQ14689 1571 aa26.84■■□□□ 1.89
TPM3-220ENST00000509601 MPHOSPH9Q99550 1183 aa26.84■■□□□ 1.89
TPM3-220ENST00000509601 MSH6P52701 1360 aa26.83■■□□□ 1.88
TPM3-220ENST00000509601 NCOA3Q9Y6Q9 1424 aa26.82■■□□□ 1.88
TPM3-220ENST00000509601 NRXN3Q9Y4C0 1643 aa26.82■■□□□ 1.88
TPM3-220ENST00000509601 NEXMIFQ5QGS0 1516 aa26.81■■□□□ 1.88
TPM3-220ENST00000509601 SLAIN2Q9P270 581 aa26.81■■□□□ 1.88
TPM3-220ENST00000509601 SETBP1Q9Y6X0 1596 aa26.8■■□□□ 1.88
TPM3-220ENST00000509601 KIF1BO60333 1816 aa26.8■■□□□ 1.88
TPM3-220ENST00000509601 METP08581 1390 aa26.79■■□□□ 1.88
TPM3-220ENST00000509601 RPGRIP1LQ68CZ1 1315 aa26.77■■□□□ 1.88
TPM3-220ENST00000509601 C19orf44Q9H6X5 657 aa26.77■■□□□ 1.88
TPM3-220ENST00000509601 SETD5Q9C0A6 1442 aa26.76■■□□□ 1.87
TPM3-220ENST00000509601 VGFO15240 615 aaPredicted RBP26.76■■□□□ 1.87
TPM3-220ENST00000509601 C14orf37Q86TY3 774 aa26.74■■□□□ 1.87
TPM3-220ENST00000509601 MED1Q15648 1581 aaPredicted RBP26.72■■□□□ 1.87
TPM3-220ENST00000509601 ROBO1Q9Y6N7 1651 aa26.71■■□□□ 1.87
TPM3-220ENST00000509601 ACIN1Q9UKV3 1341 aaKnown RBP26.7■■□□□ 1.87
TPM3-220ENST00000509601 CADPS2Q86UW7 1296 aa26.69■■□□□ 1.86
TPM3-220ENST00000509601 ATF3P18847 181 aa26.68■■□□□ 1.86
TPM3-220ENST00000509601 XRN1Q8IZH2 1706 aaKnown RBP26.68■■□□□ 1.86
TPM3-220ENST00000509601 RGL3Q3MIN7 710 aa26.67■■□□□ 1.86
TPM3-220ENST00000509601 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.67■■□□□ 1.86
TPM3-220ENST00000509601 CCDC144AA2RUR9 1427 aa26.66■■□□□ 1.86
TPM3-220ENST00000509601 RAB3GAP2Q9H2M9 1393 aa26.66■■□□□ 1.86
TPM3-220ENST00000509601 SPATA31E1Q6ZUB1 1445 aa26.65■■□□□ 1.86
TPM3-220ENST00000509601 SOCS7O14512 581 aa26.64■■□□□ 1.86
TPM3-220ENST00000509601 ADGRF5Q8IZF2 1346 aa26.63■■□□□ 1.85
TPM3-220ENST00000509601 PPLO60437 1756 aa26.61■■□□□ 1.85
TPM3-220ENST00000509601 SETD1AO15047 1707 aaKnown RBP26.59■■□□□ 1.85
TPM3-220ENST00000509601 BRINP3Q76B58 766 aa26.57■■□□□ 1.84
TPM3-220ENST00000509601 PHF23Q9BUL5 403 aaPredicted RBP26.57■■□□□ 1.84
TPM3-220ENST00000509601 ROBO2Q9HCK4 1378 aa26.57■■□□□ 1.84
TPM3-220ENST00000509601 DCCP43146 1447 aa26.56■■□□□ 1.84
TPM3-220ENST00000509601 HRCP23327 699 aa26.56■■□□□ 1.84
TPM3-220ENST00000509601 RGS17Q9UGC6 210 aaPredicted RBP26.56■■□□□ 1.84
TPM3-220ENST00000509601 ANKRD30BQ9BXX2 1392 aa26.54■■□□□ 1.84
TPM3-220ENST00000509601 ADGRL3Q9HAR2 1447 aa26.54■■□□□ 1.84
TPM3-220ENST00000509601 PHLPP1O60346 1717 aa26.53■■□□□ 1.84
TPM3-220ENST00000509601 MST1RQ04912 1400 aa26.52■■□□□ 1.84
TPM3-220ENST00000509601 PTCH1Q13635 1447 aa26.52■■□□□ 1.84
TPM3-220ENST00000509601 PRAG1Q86YV5 1406 aa26.51■■□□□ 1.83
TPM3-220ENST00000509601 JCADQ9P266 1359 aa26.51■■□□□ 1.83
TPM3-220ENST00000509601 COL16A1Q07092 1604 aaPredicted RBP26.49■■□□□ 1.83
TPM3-220ENST00000509601 IFT172Q9UG01 1749 aa26.48■■□□□ 1.83
TPM3-220ENST00000509601 AHDC1Q5TGY3 1603 aaPredicted RBP26.47■■□□□ 1.83
TPM3-220ENST00000509601 TMEM132EQ6IEE7 984 aa26.47■■□□□ 1.83
TPM3-220ENST00000509601 NALCNQ8IZF0 1738 aa26.45■■□□□ 1.83
TPM3-220ENST00000509601 STK26Q9P289 416 aa26.45■■□□□ 1.82
TPM3-220ENST00000509601 PIK3C2GO75747 1445 aa26.45■■□□□ 1.82
TPM3-220ENST00000509601 C14orf93Q9H972 538 aaKnown RBP26.44■■□□□ 1.82
TPM3-220ENST00000509601 WAPLQ7Z5K2 1190 aa26.42■■□□□ 1.82
TPM3-220ENST00000509601 DDX17Q92841 729 aaKnown RBP26.42■■□□□ 1.82
TPM3-220ENST00000509601 ASXL1Q8IXJ9 1541 aa26.42■■□□□ 1.82
TPM3-220ENST00000509601 LRPPRCP42704 1394 aaKnown RBP26.42■■□□□ 1.82
TPM3-220ENST00000509601 ABCC11Q96J66 1382 aa26.42■■□□□ 1.82
TPM3-220ENST00000509601 C1orf167Q5SNV9 1468 aa26.41■■□□□ 1.82
TPM3-220ENST00000509601 CFAP70Q5T0N1 1121 aa26.4■■□□□ 1.82
TPM3-220ENST00000509601 ORAI2Q96SN7 254 aa26.4■■□□□ 1.82
TPM3-220ENST00000509601 NRXN1Q9ULB1 1477 aa26.39■■□□□ 1.82
TPM3-220ENST00000509601 POTEAQ6S8J7 498 aa26.39■■□□□ 1.82
TPM3-220ENST00000509601 TECPR2O15040 1411 aa26.39■■□□□ 1.81
TPM3-220ENST00000509601 SPATA31A6Q5VVP1 1343 aa26.39■■□□□ 1.81
TPM3-220ENST00000509601 LRRC59Q96AG4 307 aaKnown RBP26.36■■□□□ 1.81
TPM3-220ENST00000509601 SIRT1Q96EB6 747 aa26.36■■□□□ 1.81
TPM3-220ENST00000509601 PLEKHH1Q9ULM0 1364 aa26.35■■□□□ 1.81
TPM3-220ENST00000509601 YTHDC2Q9H6S0 1430 aaKnown RBP26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms