RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 HDGFP51858 240 aaKnown RBP16.75■□□□□ 0.27
LIMCH1-210ENST00000509454 NUTM2DQ5VT03 806 aaPredicted RBP16.75■□□□□ 0.27
LIMCH1-210ENST00000509454 SCAF11Q99590 1463 aaKnown RBP16.75■□□□□ 0.27
LIMCH1-210ENST00000509454 SLIT1O75093 1534 aa16.74■□□□□ 0.27
LIMCH1-210ENST00000509454 LTKP29376 864 aa16.74■□□□□ 0.27
LIMCH1-210ENST00000509454 NPHP4O75161 1426 aaPredicted RBP16.73■□□□□ 0.27
LIMCH1-210ENST00000509454 RIMS2Q9UQ26 1411 aa16.73■□□□□ 0.27
LIMCH1-210ENST00000509454 ARHGAP23Q9P227 1491 aa16.73■□□□□ 0.27
LIMCH1-210ENST00000509454 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.71■□□□□ 0.27
LIMCH1-210ENST00000509454 NEURL4Q96JN8 1562 aa16.71■□□□□ 0.27
LIMCH1-210ENST00000509454 RGL3Q3MIN7 710 aa16.7■□□□□ 0.26
LIMCH1-210ENST00000509454 IQGAP1P46940 1657 aa16.69■□□□□ 0.26
LIMCH1-210ENST00000509454 ANKRD30BQ9BXX2 1392 aa16.68■□□□□ 0.26
LIMCH1-210ENST00000509454 ZFYVE9O95405 1425 aa16.67■□□□□ 0.26
LIMCH1-210ENST00000509454 MED14O60244 1454 aa16.67■□□□□ 0.26
LIMCH1-210ENST00000509454 SLC26A8Q96RN1 970 aa16.65■□□□□ 0.26
LIMCH1-210ENST00000509454 ZNF335Q9H4Z2 1342 aaPredicted RBP16.64■□□□□ 0.25
LIMCH1-210ENST00000509454 PLEKHG1Q9ULL1 1385 aa16.64■□□□□ 0.25
LIMCH1-210ENST00000509454 RPGRIP1LQ68CZ1 1315 aa16.63■□□□□ 0.25
LIMCH1-210ENST00000509454 DHX57Q6P158 1386 aaKnown RBP16.63■□□□□ 0.25
LIMCH1-210ENST00000509454 NEXMIFQ5QGS0 1516 aa16.62■□□□□ 0.25
LIMCH1-210ENST00000509454 VGFO15240 615 aaPredicted RBP16.62■□□□□ 0.25
LIMCH1-210ENST00000509454 SPATA31E1Q6ZUB1 1445 aa16.61■□□□□ 0.25
LIMCH1-210ENST00000509454 NEUROD1Q13562 356 aa16.6■□□□□ 0.25
LIMCH1-210ENST00000509454 PPLO60437 1756 aa16.59■□□□□ 0.25
LIMCH1-210ENST00000509454 SIN3AQ96ST3 1273 aa16.57■□□□□ 0.24
LIMCH1-210ENST00000509454 KDM2AQ9Y2K7 1162 aa16.57■□□□□ 0.24
LIMCH1-210ENST00000509454 DCAF11Q8TEB1 546 aa16.55■□□□□ 0.24
LIMCH1-210ENST00000509454 ADGRF5Q8IZF2 1346 aa16.55■□□□□ 0.24
LIMCH1-210ENST00000509454 CERKQ8TCT0 537 aa16.55■□□□□ 0.24
LIMCH1-210ENST00000509454 TBX22Q9Y458 520 aa16.55■□□□□ 0.24
LIMCH1-210ENST00000509454 ADAMTS13Q76LX8 1427 aa16.54■□□□□ 0.24
LIMCH1-210ENST00000509454 DIP2AQ14689 1571 aa16.53■□□□□ 0.24
LIMCH1-210ENST00000509454 LTBP4Q8N2S1 1624 aa16.53■□□□□ 0.24
LIMCH1-210ENST00000509454 IFT172Q9UG01 1749 aa16.53■□□□□ 0.24
LIMCH1-210ENST00000509454 SETBP1Q9Y6X0 1596 aa16.53■□□□□ 0.24
LIMCH1-210ENST00000509454 KCNA6P17658 529 aa16.52■□□□□ 0.24
LIMCH1-210ENST00000509454 NRXN3Q9Y4C0 1643 aa16.51■□□□□ 0.23
LIMCH1-210ENST00000509454 CPS1P31327 1500 aa16.51■□□□□ 0.23
LIMCH1-210ENST00000509454 STRCP1A6NGW2 1772 aa16.5■□□□□ 0.23
LIMCH1-210ENST00000509454 PROSER2Q86WR7 435 aaPredicted RBP16.5■□□□□ 0.23
LIMCH1-210ENST00000509454 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
LIMCH1-210ENST00000509454 ALKQ9UM73 1620 aa16.49■□□□□ 0.23
LIMCH1-210ENST00000509454 MYOM2P54296 1465 aa16.48■□□□□ 0.23
LIMCH1-210ENST00000509454 METP08581 1390 aa16.48■□□□□ 0.23
LIMCH1-210ENST00000509454 AMOTL2Q9Y2J4 779 aa16.48■□□□□ 0.23
LIMCH1-210ENST00000509454 PIK3R4Q99570 1358 aa16.47■□□□□ 0.23
LIMCH1-210ENST00000509454 CHD2O14647 1828 aaKnown RBP16.47■□□□□ 0.23
LIMCH1-210ENST00000509454 PIK3C2GO75747 1445 aa16.46■□□□□ 0.23
LIMCH1-210ENST00000509454 RBM33Q96EV2 1170 aaKnown RBP16.46■□□□□ 0.23
LIMCH1-210ENST00000509454 C14orf37Q86TY3 774 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 L3MBTL2Q969R5 705 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 TONSLQ96HA7 1378 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 LRRC7Q96NW7 1537 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 NWD1Q149M9 1564 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 CFAP70Q5T0N1 1121 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 STAC3Q96MF2 364 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 STK26Q9P289 416 aa16.45■□□□□ 0.22
LIMCH1-210ENST00000509454 PTPRUQ92729 1446 aa16.44■□□□□ 0.22
LIMCH1-210ENST00000509454 NKTRP30414 1462 aaKnown RBP16.44■□□□□ 0.22
LIMCH1-210ENST00000509454 TMEM132EQ6IEE7 984 aa16.44■□□□□ 0.22
LIMCH1-210ENST00000509454 TMEM94Q12767 1356 aa16.43■□□□□ 0.22
LIMCH1-210ENST00000509454 NRXN1Q9ULB1 1477 aa16.43■□□□□ 0.22
LIMCH1-210ENST00000509454 C14orf93Q9H972 538 aaKnown RBP16.42■□□□□ 0.22
LIMCH1-210ENST00000509454 SETD1AO15047 1707 aaKnown RBP16.42■□□□□ 0.22
LIMCH1-210ENST00000509454 UBAP1LF5GYI3 381 aa16.41■□□□□ 0.22
LIMCH1-210ENST00000509454 LAMC1P11047 1609 aa16.41■□□□□ 0.22
LIMCH1-210ENST00000509454 IQSEC2Q5JU85 1478 aa16.41■□□□□ 0.22
LIMCH1-210ENST00000509454 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
LIMCH1-210ENST00000509454 XRN1Q8IZH2 1706 aaKnown RBP16.39■□□□□ 0.22
LIMCH1-210ENST00000509454 MSH6P52701 1360 aa16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 TOM1O60784 492 aa16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 FBXO41Q8TF61 875 aa16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 PRAG1Q86YV5 1406 aa16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 YTHDC2Q9H6S0 1430 aaKnown RBP16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 LRPPRCP42704 1394 aaKnown RBP16.37■□□□□ 0.21
LIMCH1-210ENST00000509454 ASXL1Q8IXJ9 1541 aa16.36■□□□□ 0.21
LIMCH1-210ENST00000509454 XIRP1Q702N8 1843 aaKnown RBP16.36■□□□□ 0.21
LIMCH1-210ENST00000509454 PIP4K2BP78356 416 aa16.35■□□□□ 0.21
LIMCH1-210ENST00000509454 ROBO2Q9HCK4 1378 aa16.35■□□□□ 0.21
LIMCH1-210ENST00000509454 PTCH1Q13635 1447 aa16.34■□□□□ 0.21
LIMCH1-210ENST00000509454 TRAK1Q9UPV9 953 aa16.34■□□□□ 0.21
LIMCH1-210ENST00000509454 ATF3P18847 181 aa16.33■□□□□ 0.2
LIMCH1-210ENST00000509454 POGKQ9P215 609 aa16.33■□□□□ 0.2
LIMCH1-210ENST00000509454 SAFB2Q14151 953 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIMCH1-210ENST00000509454 WAPLQ7Z5K2 1190 aa16.32■□□□□ 0.2
LIMCH1-210ENST00000509454 ABCC11Q96J66 1382 aa16.32■□□□□ 0.2
LIMCH1-210ENST00000509454 NCOA3Q9Y6Q9 1424 aa16.32■□□□□ 0.2
LIMCH1-210ENST00000509454 NBPF1Q3BBV0 1214 aa16.31■□□□□ 0.2
LIMCH1-210ENST00000509454 C19orf44Q9H6X5 657 aa16.31■□□□□ 0.2
LIMCH1-210ENST00000509454 KNDC1Q76NI1 1749 aa16.31■□□□□ 0.2
LIMCH1-210ENST00000509454 ADGRB1O14514 1584 aa16.3■□□□□ 0.2
LIMCH1-210ENST00000509454 ILDR1Q86SU0 546 aaPredicted RBP16.3■□□□□ 0.2
LIMCH1-210ENST00000509454 KIAA1210Q9ULL0 1709 aa16.3■□□□□ 0.2
LIMCH1-210ENST00000509454 ROCK2O75116 1388 aaKnown RBP16.3■□□□□ 0.2
LIMCH1-210ENST00000509454 NBPF8Q3BBV2 869 aa16.29■□□□□ 0.2
LIMCH1-210ENST00000509454 PRAM1Q96QH2 718 aa16.29■□□□□ 0.2
LIMCH1-210ENST00000509454 TECPR2O15040 1411 aa16.29■□□□□ 0.2
LIMCH1-210ENST00000509454 PLEKHH1Q9ULM0 1364 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms