RNA–Protein interactions for RNA: ENST00000508895.5

SNCA-211, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 3 BASIC

Gene SNCA, Length 905 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-211ENST00000508895 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
SNCA-211ENST00000508895 LRRC7Q96NW7 1537 aa13.11□□□□□ -0.31
SNCA-211ENST00000508895 RIMS2Q9UQ26 1411 aa13.11□□□□□ -0.31
SNCA-211ENST00000508895 FOXD1Q16676 465 aa13.1□□□□□ -0.31
SNCA-211ENST00000508895 CPS1P31327 1500 aa13.09□□□□□ -0.31
SNCA-211ENST00000508895 CHGAP10645 457 aaKnown RBP13.09□□□□□ -0.31
SNCA-211ENST00000508895 RBM33Q96EV2 1170 aaKnown RBP13.08□□□□□ -0.32
SNCA-211ENST00000508895 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
SNCA-211ENST00000508895 EID1Q9Y6B2 187 aa13.07□□□□□ -0.32
SNCA-211ENST00000508895 NRXN3Q9Y4C0 1643 aa13.06□□□□□ -0.32
SNCA-211ENST00000508895 ADAMTS13Q76LX8 1427 aa13.06□□□□□ -0.32
SNCA-211ENST00000508895 UBAP1LF5GYI3 381 aa13.06□□□□□ -0.32
SNCA-211ENST00000508895 TRPM2O94759 1503 aa13.06□□□□□ -0.32
SNCA-211ENST00000508895 CHD2O14647 1828 aaKnown RBP13.06□□□□□ -0.32
SNCA-211ENST00000508895 PLEKHG1Q9ULL1 1385 aa13.05□□□□□ -0.32
SNCA-211ENST00000508895 NWD1Q149M9 1564 aa13.03□□□□□ -0.32
SNCA-211ENST00000508895 KIF1BO60333 1816 aa13.03□□□□□ -0.32
SNCA-211ENST00000508895 NEXMIFQ5QGS0 1516 aa13.03□□□□□ -0.32
SNCA-211ENST00000508895 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
SNCA-211ENST00000508895 PTPRUQ92729 1446 aa13.02□□□□□ -0.33
SNCA-211ENST00000508895 KCNA6P17658 529 aa13.01□□□□□ -0.33
SNCA-211ENST00000508895 PIP4K2BP78356 416 aa13.01□□□□□ -0.33
SNCA-211ENST00000508895 SETD5Q9C0A6 1442 aa13□□□□□ -0.33
SNCA-211ENST00000508895 TMEM94Q12767 1356 aa12.99□□□□□ -0.33
SNCA-211ENST00000508895 RAB3GAP2Q9H2M9 1393 aa12.99□□□□□ -0.33
SNCA-211ENST00000508895 PPP1R15AO75807 674 aaPredicted RBP12.99□□□□□ -0.33
SNCA-211ENST00000508895 BCANQ96GW7 911 aa12.99□□□□□ -0.33
SNCA-211ENST00000508895 MPHOSPH9Q99550 1183 aa12.99□□□□□ -0.33
SNCA-211ENST00000508895 HSPA1LP34931 641 aa12.98□□□□□ -0.33
SNCA-211ENST00000508895 PPLO60437 1756 aa12.98□□□□□ -0.33
SNCA-211ENST00000508895 SETD1AO15047 1707 aaKnown RBP12.98□□□□□ -0.33
SNCA-211ENST00000508895 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
SNCA-211ENST00000508895 TBX22Q9Y458 520 aa12.97□□□□□ -0.33
SNCA-211ENST00000508895 SETBP1Q9Y6X0 1596 aa12.97□□□□□ -0.33
SNCA-211ENST00000508895 METP08581 1390 aa12.96□□□□□ -0.33
SNCA-211ENST00000508895 SCAF1Q9H7N4 1312 aaKnown RBP12.96□□□□□ -0.33
SNCA-211ENST00000508895 ZNF326Q5BKZ1 582 aaKnown RBP12.96□□□□□ -0.33
SNCA-211ENST00000508895 PROSER2Q86WR7 435 aaPredicted RBP12.96□□□□□ -0.33
SNCA-211ENST00000508895 SRCAPQ6ZRS2 3230 aa12.95□□□□□ -0.34
SNCA-211ENST00000508895 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.95□□□□□ -0.34
SNCA-211ENST00000508895 XRN1Q8IZH2 1706 aaKnown RBP12.95□□□□□ -0.34
SNCA-211ENST00000508895 DIP2AQ14689 1571 aa12.94□□□□□ -0.34
SNCA-211ENST00000508895 IFT172Q9UG01 1749 aa12.94□□□□□ -0.34
SNCA-211ENST00000508895 NKTRP30414 1462 aaKnown RBP12.94□□□□□ -0.34
SNCA-211ENST00000508895 TOM1O60784 492 aa12.94□□□□□ -0.34
SNCA-211ENST00000508895 SPATA31E1Q6ZUB1 1445 aa12.94□□□□□ -0.34
SNCA-211ENST00000508895 AMOTL2Q9Y2J4 779 aa12.92□□□□□ -0.34
SNCA-211ENST00000508895 ADGRF5Q8IZF2 1346 aa12.91□□□□□ -0.34
SNCA-211ENST00000508895 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
SNCA-211ENST00000508895 PHF23Q9BUL5 403 aaPredicted RBP12.91□□□□□ -0.34
SNCA-211ENST00000508895 HDGFP51858 240 aaKnown RBP12.9□□□□□ -0.34
SNCA-211ENST00000508895 RGL3Q3MIN7 710 aa12.9□□□□□ -0.34
SNCA-211ENST00000508895 ROBO1Q9Y6N7 1651 aa12.89□□□□□ -0.35
SNCA-211ENST00000508895 CCDC144AA2RUR9 1427 aa12.88□□□□□ -0.35
SNCA-211ENST00000508895 ASXL1Q8IXJ9 1541 aa12.88□□□□□ -0.35
SNCA-211ENST00000508895 PIK3R4Q99570 1358 aa12.88□□□□□ -0.35
SNCA-211ENST00000508895 ANKRD30BQ9BXX2 1392 aa12.87□□□□□ -0.35
SNCA-211ENST00000508895 NALCNQ8IZF0 1738 aa12.87□□□□□ -0.35
SNCA-211ENST00000508895 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
SNCA-211ENST00000508895 FAM135BQ49AJ0 1406 aa12.86□□□□□ -0.35
SNCA-211ENST00000508895 ROBO2Q9HCK4 1378 aa12.85□□□□□ -0.35
SNCA-211ENST00000508895 RPGRIP1LQ68CZ1 1315 aa12.85□□□□□ -0.35
SNCA-211ENST00000508895 MSH6P52701 1360 aa12.84□□□□□ -0.35
SNCA-211ENST00000508895 VGFO15240 615 aaPredicted RBP12.83□□□□□ -0.36
SNCA-211ENST00000508895 SLAIN2Q9P270 581 aa12.83□□□□□ -0.36
SNCA-211ENST00000508895 TMEM132EQ6IEE7 984 aa12.82□□□□□ -0.36
SNCA-211ENST00000508895 PIK3C2GO75747 1445 aa12.81□□□□□ -0.36
SNCA-211ENST00000508895 NCOA3Q9Y6Q9 1424 aa12.81□□□□□ -0.36
SNCA-211ENST00000508895 PHLPP1O60346 1717 aa12.81□□□□□ -0.36
SNCA-211ENST00000508895 NRXN1Q9ULB1 1477 aa12.8□□□□□ -0.36
SNCA-211ENST00000508895 HRCP23327 699 aa12.8□□□□□ -0.36
SNCA-211ENST00000508895 C19orf44Q9H6X5 657 aa12.8□□□□□ -0.36
SNCA-211ENST00000508895 COL16A1Q07092 1604 aaPredicted RBP12.8□□□□□ -0.36
SNCA-211ENST00000508895 PLEKHH1Q9ULM0 1364 aa12.8□□□□□ -0.36
SNCA-211ENST00000508895 MST1RQ04912 1400 aa12.79□□□□□ -0.36
SNCA-211ENST00000508895 C14orf37Q86TY3 774 aa12.79□□□□□ -0.36
SNCA-211ENST00000508895 DDX17Q92841 729 aaKnown RBP12.79□□□□□ -0.36
SNCA-211ENST00000508895 DHX57Q6P158 1386 aaKnown RBP12.79□□□□□ -0.36
SNCA-211ENST00000508895 PRAG1Q86YV5 1406 aa12.79□□□□□ -0.36
SNCA-211ENST00000508895 ADGRL3Q9HAR2 1447 aa12.79□□□□□ -0.36
SNCA-211ENST00000508895 CFAP70Q5T0N1 1121 aa12.78□□□□□ -0.36
SNCA-211ENST00000508895 WAPLQ7Z5K2 1190 aa12.78□□□□□ -0.36
SNCA-211ENST00000508895 STK26Q9P289 416 aa12.78□□□□□ -0.36
SNCA-211ENST00000508895 ACIN1Q9UKV3 1341 aaKnown RBP12.78□□□□□ -0.36
SNCA-211ENST00000508895 PTCH1Q13635 1447 aa12.78□□□□□ -0.36
SNCA-211ENST00000508895 BRINP3Q76B58 766 aa12.77□□□□□ -0.37
SNCA-211ENST00000508895 MYOM2P54296 1465 aa12.77□□□□□ -0.37
SNCA-211ENST00000508895 KNDC1Q76NI1 1749 aa12.76□□□□□ -0.37
SNCA-211ENST00000508895 RGS17Q9UGC6 210 aaPredicted RBP12.76□□□□□ -0.37
SNCA-211ENST00000508895 ATF3P18847 181 aa12.75□□□□□ -0.37
SNCA-211ENST00000508895 LRPPRCP42704 1394 aaKnown RBP12.75□□□□□ -0.37
SNCA-211ENST00000508895 DCCP43146 1447 aa12.75□□□□□ -0.37
SNCA-211ENST00000508895 AHDC1Q5TGY3 1603 aaPredicted RBP12.75□□□□□ -0.37
SNCA-211ENST00000508895 CADPS2Q86UW7 1296 aa12.75□□□□□ -0.37
SNCA-211ENST00000508895 C14orf93Q9H972 538 aaKnown RBP12.75□□□□□ -0.37
SNCA-211ENST00000508895 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
SNCA-211ENST00000508895 NHSL1Q5SYE7 1610 aa12.74□□□□□ -0.37
SNCA-211ENST00000508895 TECPR2O15040 1411 aa12.74□□□□□ -0.37
SNCA-211ENST00000508895 YTHDC2Q9H6S0 1430 aaKnown RBP12.74□□□□□ -0.37
SNCA-211ENST00000508895 RGPD8O14715 1765 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms