RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 SLC26A8Q96RN1 970 aa21.38■■□□□ 1.01
HOXC9-202ENST00000504557 RIMS2Q9UQ26 1411 aa21.38■■□□□ 1.01
HOXC9-202ENST00000504557 SCAF1Q9H7N4 1312 aaKnown RBP21.37■■□□□ 1.01
HOXC9-202ENST00000504557 CLTCL1P53675 1640 aa21.34■■□□□ 1.01
HOXC9-202ENST00000504557 SLC4A1APQ9BWU0 796 aaKnown RBP21.34■■□□□ 1.01
HOXC9-202ENST00000504557 KIF1BO60333 1816 aa21.34■■□□□ 1.01
HOXC9-202ENST00000504557 ZFYVE9O95405 1425 aa21.33■■□□□ 1.01
HOXC9-202ENST00000504557 PIP4K2BP78356 416 aa21.32■■□□□ 1
HOXC9-202ENST00000504557 ZNF326Q5BKZ1 582 aaKnown RBP21.32■■□□□ 1
HOXC9-202ENST00000504557 HDGFP51858 240 aaKnown RBP21.31■■□□□ 1
HOXC9-202ENST00000504557 LRRC7Q96NW7 1537 aa21.3■■□□□ 1
HOXC9-202ENST00000504557 XIRP1Q702N8 1843 aaKnown RBP21.3■■□□□ 1
HOXC9-202ENST00000504557 FOXD1Q16676 465 aa21.3■■□□□ 1
HOXC9-202ENST00000504557 TRPM2O94759 1503 aa21.29■■□□□ 1
HOXC9-202ENST00000504557 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.28■■□□□ 1
HOXC9-202ENST00000504557 PLEKHG1Q9ULL1 1385 aa21.27■■□□□ 1
HOXC9-202ENST00000504557 TOM1O60784 492 aa21.26■□□□□ 0.99
HOXC9-202ENST00000504557 RBM33Q96EV2 1170 aaKnown RBP21.26■□□□□ 0.99
HOXC9-202ENST00000504557 CHD2O14647 1828 aaKnown RBP21.25■□□□□ 0.99
HOXC9-202ENST00000504557 SETD5Q9C0A6 1442 aa21.23■□□□□ 0.99
HOXC9-202ENST00000504557 KCNA6P17658 529 aa21.23■□□□□ 0.99
HOXC9-202ENST00000504557 PROSER2Q86WR7 435 aaPredicted RBP21.22■□□□□ 0.99
HOXC9-202ENST00000504557 MPHOSPH9Q99550 1183 aa21.2■□□□□ 0.98
HOXC9-202ENST00000504557 NWD1Q149M9 1564 aa21.19■□□□□ 0.98
HOXC9-202ENST00000504557 TMEM94Q12767 1356 aa21.19■□□□□ 0.98
HOXC9-202ENST00000504557 ALKQ9UM73 1620 aa21.18■□□□□ 0.98
HOXC9-202ENST00000504557 RAB3GAP2Q9H2M9 1393 aa21.18■□□□□ 0.98
HOXC9-202ENST00000504557 ADAMTS13Q76LX8 1427 aa21.18■□□□□ 0.98
HOXC9-202ENST00000504557 NEXMIFQ5QGS0 1516 aa21.18■□□□□ 0.98
HOXC9-202ENST00000504557 NRXN3Q9Y4C0 1643 aa21.16■□□□□ 0.98
HOXC9-202ENST00000504557 DIP2AQ14689 1571 aa21.16■□□□□ 0.98
HOXC9-202ENST00000504557 TBX22Q9Y458 520 aa21.16■□□□□ 0.98
HOXC9-202ENST00000504557 NKTRP30414 1462 aaKnown RBP21.15■□□□□ 0.98
HOXC9-202ENST00000504557 HSPA1LP34931 641 aa21.14■□□□□ 0.97
HOXC9-202ENST00000504557 CCDC144AA2RUR9 1427 aa21.13■□□□□ 0.97
HOXC9-202ENST00000504557 PPLO60437 1756 aa21.13■□□□□ 0.97
HOXC9-202ENST00000504557 C14orf37Q86TY3 774 aa21.13■□□□□ 0.97
HOXC9-202ENST00000504557 SETBP1Q9Y6X0 1596 aa21.11■□□□□ 0.97
HOXC9-202ENST00000504557 RGL3Q3MIN7 710 aa21.11■□□□□ 0.97
HOXC9-202ENST00000504557 AMOTL2Q9Y2J4 779 aa21.09■□□□□ 0.97
HOXC9-202ENST00000504557 PTPRUQ92729 1446 aa21.08■□□□□ 0.97
HOXC9-202ENST00000504557 MSH6P52701 1360 aa21.08■□□□□ 0.96
HOXC9-202ENST00000504557 VGFO15240 615 aaPredicted RBP21.06■□□□□ 0.96
HOXC9-202ENST00000504557 METP08581 1390 aa21.06■□□□□ 0.96
HOXC9-202ENST00000504557 DISP3Q9P2K9 1392 aa21.06■□□□□ 0.96
HOXC9-202ENST00000504557 PIK3R4Q99570 1358 aa21.05■□□□□ 0.96
HOXC9-202ENST00000504557 ACIN1Q9UKV3 1341 aaKnown RBP21.04■□□□□ 0.96
HOXC9-202ENST00000504557 XRN1Q8IZH2 1706 aaKnown RBP21.04■□□□□ 0.96
HOXC9-202ENST00000504557 ROBO1Q9Y6N7 1651 aa21.04■□□□□ 0.96
HOXC9-202ENST00000504557 IFT172Q9UG01 1749 aa21.04■□□□□ 0.96
HOXC9-202ENST00000504557 RPGRIP1LQ68CZ1 1315 aa21.04■□□□□ 0.96
HOXC9-202ENST00000504557 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.03■□□□□ 0.96
HOXC9-202ENST00000504557 SETD1AO15047 1707 aaKnown RBP21.02■□□□□ 0.96
HOXC9-202ENST00000504557 SPATA31E1Q6ZUB1 1445 aa21■□□□□ 0.95
HOXC9-202ENST00000504557 ADGRF5Q8IZF2 1346 aa20.99■□□□□ 0.95
HOXC9-202ENST00000504557 ATF3P18847 181 aa20.97■□□□□ 0.95
HOXC9-202ENST00000504557 SLAIN2Q9P270 581 aa20.97■□□□□ 0.95
HOXC9-202ENST00000504557 PHLPP1O60346 1717 aa20.95■□□□□ 0.94
HOXC9-202ENST00000504557 NALCNQ8IZF0 1738 aa20.95■□□□□ 0.94
HOXC9-202ENST00000504557 C19orf44Q9H6X5 657 aa20.94■□□□□ 0.94
HOXC9-202ENST00000504557 FAM135BQ49AJ0 1406 aa20.94■□□□□ 0.94
HOXC9-202ENST00000504557 NCOA3Q9Y6Q9 1424 aa20.94■□□□□ 0.94
HOXC9-202ENST00000504557 ANKRD30BQ9BXX2 1392 aa20.93■□□□□ 0.94
HOXC9-202ENST00000504557 MED1Q15648 1581 aaPredicted RBP20.93■□□□□ 0.94
HOXC9-202ENST00000504557 CADPS2Q86UW7 1296 aa20.92■□□□□ 0.94
HOXC9-202ENST00000504557 STK26Q9P289 416 aa20.91■□□□□ 0.94
HOXC9-202ENST00000504557 HRCP23327 699 aa20.89■□□□□ 0.93
HOXC9-202ENST00000504557 ROBO2Q9HCK4 1378 aa20.88■□□□□ 0.93
HOXC9-202ENST00000504557 TMEM132EQ6IEE7 984 aa20.88■□□□□ 0.93
HOXC9-202ENST00000504557 KDM2AQ9Y2K7 1162 aa20.87■□□□□ 0.93
HOXC9-202ENST00000504557 ADGRL3Q9HAR2 1447 aa20.87■□□□□ 0.93
HOXC9-202ENST00000504557 PIK3C2GO75747 1445 aa20.86■□□□□ 0.93
HOXC9-202ENST00000504557 PTCH1Q13635 1447 aa20.85■□□□□ 0.93
HOXC9-202ENST00000504557 ASXL1Q8IXJ9 1541 aa20.84■□□□□ 0.93
HOXC9-202ENST00000504557 ILDR2Q71H61 639 aa20.84■□□□□ 0.93
HOXC9-202ENST00000504557 PHF23Q9BUL5 403 aaPredicted RBP20.84■□□□□ 0.93
HOXC9-202ENST00000504557 DCCP43146 1447 aa20.83■□□□□ 0.93
HOXC9-202ENST00000504557 MYOM2P54296 1465 aa20.82■□□□□ 0.92
HOXC9-202ENST00000504557 MST1RQ04912 1400 aa20.82■□□□□ 0.92
HOXC9-202ENST00000504557 CFAP70Q5T0N1 1121 aa20.82■□□□□ 0.92
HOXC9-202ENST00000504557 DCAF11Q8TEB1 546 aa20.82■□□□□ 0.92
HOXC9-202ENST00000504557 LAMC1P11047 1609 aa20.82■□□□□ 0.92
HOXC9-202ENST00000504557 KNDC1Q76NI1 1749 aa20.81■□□□□ 0.92
HOXC9-202ENST00000504557 COL16A1Q07092 1604 aaPredicted RBP20.8■□□□□ 0.92
HOXC9-202ENST00000504557 BRINP3Q76B58 766 aa20.8■□□□□ 0.92
HOXC9-202ENST00000504557 WAPLQ7Z5K2 1190 aa20.8■□□□□ 0.92
HOXC9-202ENST00000504557 NRXN1Q9ULB1 1477 aa20.78■□□□□ 0.92
HOXC9-202ENST00000504557 LRPPRCP42704 1394 aaKnown RBP20.78■□□□□ 0.92
HOXC9-202ENST00000504557 YTHDC2Q9H6S0 1430 aaKnown RBP20.78■□□□□ 0.92
HOXC9-202ENST00000504557 DDX17Q92841 729 aaKnown RBP20.77■□□□□ 0.92
HOXC9-202ENST00000504557 C14orf93Q9H972 538 aaKnown RBP20.77■□□□□ 0.92
HOXC9-202ENST00000504557 AHDC1Q5TGY3 1603 aaPredicted RBP20.77■□□□□ 0.92
HOXC9-202ENST00000504557 PLEKHH1Q9ULM0 1364 aa20.76■□□□□ 0.91
HOXC9-202ENST00000504557 NUTM2FA1L443 756 aa20.75■□□□□ 0.91
HOXC9-202ENST00000504557 SAFB2Q14151 953 aaKnown RBP eCLIP20.75■□□□□ 0.91
HOXC9-202ENST00000504557 PRAG1Q86YV5 1406 aa20.75■□□□□ 0.91
HOXC9-202ENST00000504557 NHSL1Q5SYE7 1610 aa20.75■□□□□ 0.91
HOXC9-202ENST00000504557 DHX57Q6P158 1386 aaKnown RBP20.74■□□□□ 0.91
HOXC9-202ENST00000504557 C1orf167Q5SNV9 1468 aa20.74■□□□□ 0.91
HOXC9-202ENST00000504557 JCADQ9P266 1359 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms