RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 TMEM2Q9UHN6 1383 aa23.4■■□□□ 1.34
CBX4-204ENST00000495122 SPHKAPQ2M3C7 1700 aa23.39■■□□□ 1.34
CBX4-204ENST00000495122 LTKP29376 864 aa23.39■■□□□ 1.33
CBX4-204ENST00000495122 DIEXFQ68CQ4 756 aaKnown RBP23.39■■□□□ 1.33
CBX4-204ENST00000495122 ILDR2Q71H61 639 aa23.37■■□□□ 1.33
CBX4-204ENST00000495122 DISP3Q9P2K9 1392 aa23.37■■□□□ 1.33
CBX4-204ENST00000495122 IDI1Q13907 227 aa23.36■■□□□ 1.33
CBX4-204ENST00000495122 TXNDC2Q86VQ3 553 aa23.36■■□□□ 1.33
CBX4-204ENST00000495122 CHD2O14647 1828 aaKnown RBP23.36■■□□□ 1.33
CBX4-204ENST00000495122 NWD1Q149M9 1564 aa23.35■■□□□ 1.33
CBX4-204ENST00000495122 TONSLQ96HA7 1378 aa23.34■■□□□ 1.33
CBX4-204ENST00000495122 TRIM52Q96A61 297 aa23.33■■□□□ 1.33
CBX4-204ENST00000495122 MPHOSPH9Q99550 1183 aa23.32■■□□□ 1.32
CBX4-204ENST00000495122 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
CBX4-204ENST00000495122 EID1Q9Y6B2 187 aa23.32■■□□□ 1.32
CBX4-204ENST00000495122 SIN3AQ96ST3 1273 aa23.31■■□□□ 1.32
CBX4-204ENST00000495122 SLC52A1Q9NWF4 448 aa23.3■■□□□ 1.32
CBX4-204ENST00000495122 ZFYVE9O95405 1425 aa23.3■■□□□ 1.32
CBX4-204ENST00000495122 TOM1O60784 492 aa23.29■■□□□ 1.32
CBX4-204ENST00000495122 PPP1R15AO75807 674 aaPredicted RBP23.28■■□□□ 1.32
CBX4-204ENST00000495122 NEUROD1Q13562 356 aa23.27■■□□□ 1.32
CBX4-204ENST00000495122 KIF1BO60333 1816 aa23.24■■□□□ 1.31
CBX4-204ENST00000495122 PIP4K2BP78356 416 aa23.24■■□□□ 1.31
CBX4-204ENST00000495122 SCAF1Q9H7N4 1312 aaKnown RBP23.24■■□□□ 1.31
CBX4-204ENST00000495122 ANKRD30BQ9BXX2 1392 aa23.24■■□□□ 1.31
CBX4-204ENST00000495122 MED1Q15648 1581 aaPredicted RBP23.23■■□□□ 1.31
CBX4-204ENST00000495122 NKTRP30414 1462 aaKnown RBP23.23■■□□□ 1.31
CBX4-204ENST00000495122 NUP155O75694 1391 aa23.22■■□□□ 1.31
CBX4-204ENST00000495122 RIMS2Q9UQ26 1411 aa23.22■■□□□ 1.31
CBX4-204ENST00000495122 DIP2AQ14689 1571 aa23.22■■□□□ 1.31
CBX4-204ENST00000495122 PLEKHG1Q9ULL1 1385 aa23.2■■□□□ 1.3
CBX4-204ENST00000495122 HSPA1LP34931 641 aa23.2■■□□□ 1.3
CBX4-204ENST00000495122 SLC4A1APQ9BWU0 796 aaKnown RBP23.2■■□□□ 1.3
CBX4-204ENST00000495122 CLTCL1P53675 1640 aa23.19■■□□□ 1.3
CBX4-204ENST00000495122 SOCS7O14512 581 aa23.18■■□□□ 1.3
CBX4-204ENST00000495122 NRXN3Q9Y4C0 1643 aa23.17■■□□□ 1.3
CBX4-204ENST00000495122 ROBO1Q9Y6N7 1651 aa23.16■■□□□ 1.3
CBX4-204ENST00000495122 SLC26A8Q96RN1 970 aa23.16■■□□□ 1.3
CBX4-204ENST00000495122 TRPM2O94759 1503 aa23.14■■□□□ 1.3
CBX4-204ENST00000495122 KCNA6P17658 529 aa23.14■■□□□ 1.29
CBX4-204ENST00000495122 TMEM94Q12767 1356 aa23.13■■□□□ 1.29
CBX4-204ENST00000495122 ADAMTS13Q76LX8 1427 aa23.1■■□□□ 1.29
CBX4-204ENST00000495122 XRN1Q8IZH2 1706 aaKnown RBP23.1■■□□□ 1.29
CBX4-204ENST00000495122 SETBP1Q9Y6X0 1596 aa23.1■■□□□ 1.29
CBX4-204ENST00000495122 CHGAP10645 457 aaKnown RBP23.09■■□□□ 1.29
CBX4-204ENST00000495122 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.08■■□□□ 1.29
CBX4-204ENST00000495122 HDGFP51858 240 aaKnown RBP23.07■■□□□ 1.28
CBX4-204ENST00000495122 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.07■■□□□ 1.28
CBX4-204ENST00000495122 NEXMIFQ5QGS0 1516 aa23.07■■□□□ 1.28
CBX4-204ENST00000495122 SETD1AO15047 1707 aaKnown RBP23.06■■□□□ 1.28
CBX4-204ENST00000495122 BCANQ96GW7 911 aa23.06■■□□□ 1.28
CBX4-204ENST00000495122 PHLPP1O60346 1717 aa23.05■■□□□ 1.28
CBX4-204ENST00000495122 PPLO60437 1756 aa23.05■■□□□ 1.28
CBX4-204ENST00000495122 SENP3Q9H4L4 574 aaPredicted RBP23.05■■□□□ 1.28
CBX4-204ENST00000495122 PROSER2Q86WR7 435 aaPredicted RBP23.04■■□□□ 1.28
CBX4-204ENST00000495122 FAM135BQ49AJ0 1406 aa23.03■■□□□ 1.28
CBX4-204ENST00000495122 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
CBX4-204ENST00000495122 TBX22Q9Y458 520 aa23.02■■□□□ 1.28
CBX4-204ENST00000495122 NUTM2DQ5VT03 806 aaPredicted RBP23.01■■□□□ 1.27
CBX4-204ENST00000495122 RBM33Q96EV2 1170 aaKnown RBP23.01■■□□□ 1.27
CBX4-204ENST00000495122 MSH6P52701 1360 aa23■■□□□ 1.27
CBX4-204ENST00000495122 NCOA3Q9Y6Q9 1424 aa22.99■■□□□ 1.27
CBX4-204ENST00000495122 IFT172Q9UG01 1749 aa22.98■■□□□ 1.27
CBX4-204ENST00000495122 L3MBTL2Q969R5 705 aa22.97■■□□□ 1.27
CBX4-204ENST00000495122 PTPRUQ92729 1446 aa22.97■■□□□ 1.27
CBX4-204ENST00000495122 NALCNQ8IZF0 1738 aa22.96■■□□□ 1.27
CBX4-204ENST00000495122 FOXD1Q16676 465 aa22.96■■□□□ 1.27
CBX4-204ENST00000495122 COL16A1Q07092 1604 aaPredicted RBP22.95■■□□□ 1.26
CBX4-204ENST00000495122 AHDC1Q5TGY3 1603 aaPredicted RBP22.9■■□□□ 1.26
CBX4-204ENST00000495122 ZNF326Q5BKZ1 582 aaKnown RBP22.89■■□□□ 1.25
CBX4-204ENST00000495122 SHPRHQ149N8 1683 aa22.89■■□□□ 1.25
CBX4-204ENST00000495122 MIER1Q8N108 512 aa22.88■■□□□ 1.25
CBX4-204ENST00000495122 NHSL1Q5SYE7 1610 aa22.88■■□□□ 1.25
CBX4-204ENST00000495122 CCDC144AA2RUR9 1427 aa22.85■■□□□ 1.25
CBX4-204ENST00000495122 DCCP43146 1447 aa22.85■■□□□ 1.25
CBX4-204ENST00000495122 EIF4G2P78344 907 aaKnown RBP eCLIP22.85■■□□□ 1.25
CBX4-204ENST00000495122 SLAIN2Q9P270 581 aa22.85■■□□□ 1.25
CBX4-204ENST00000495122 AMOTL2Q9Y2J4 779 aa22.85■■□□□ 1.25
CBX4-204ENST00000495122 METP08581 1390 aa22.85■■□□□ 1.25
CBX4-204ENST00000495122 CENPBP07199 599 aaPredicted RBP22.83■■□□□ 1.25
CBX4-204ENST00000495122 PHF23Q9BUL5 403 aaPredicted RBP22.83■■□□□ 1.25
CBX4-204ENST00000495122 RALGAPBQ86X10 1494 aa22.81■■□□□ 1.24
CBX4-204ENST00000495122 C14orf37Q86TY3 774 aa22.81■■□□□ 1.24
CBX4-204ENST00000495122 C19orf44Q9H6X5 657 aa22.8■■□□□ 1.24
CBX4-204ENST00000495122 KNDC1Q76NI1 1749 aa22.79■■□□□ 1.24
CBX4-204ENST00000495122 CADPS2Q86UW7 1296 aa22.79■■□□□ 1.24
CBX4-204ENST00000495122 ASXL1Q8IXJ9 1541 aa22.78■■□□□ 1.24
CBX4-204ENST00000495122 PRAG1Q86YV5 1406 aa22.78■■□□□ 1.24
CBX4-204ENST00000495122 ADGRL3Q9HAR2 1447 aa22.78■■□□□ 1.24
CBX4-204ENST00000495122 PTCH1Q13635 1447 aa22.77■■□□□ 1.24
CBX4-204ENST00000495122 MST1RQ04912 1400 aa22.76■■□□□ 1.23
CBX4-204ENST00000495122 SPATA31E1Q6ZUB1 1445 aa22.76■■□□□ 1.23
CBX4-204ENST00000495122 LAMC1P11047 1609 aa22.76■■□□□ 1.23
CBX4-204ENST00000495122 HSPA5P11021 654 aaKnown RBP22.76■■□□□ 1.23
CBX4-204ENST00000495122 ATF3P18847 181 aa22.76■■□□□ 1.23
CBX4-204ENST00000495122 NBPF8Q3BBV2 869 aa22.76■■□□□ 1.23
CBX4-204ENST00000495122 RPGRIP1LQ68CZ1 1315 aa22.75■■□□□ 1.23
CBX4-204ENST00000495122 JCADQ9P266 1359 aa22.75■■□□□ 1.23
CBX4-204ENST00000495122 VGFO15240 615 aaPredicted RBP22.73■■□□□ 1.23
CBX4-204ENST00000495122 STAC3Q96MF2 364 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms