RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 PIP4K2BP78356 416 aa16.09■□□□□ 0.17
NELFE-213ENST00000494956 XIRP1Q702N8 1843 aaKnown RBP16.09■□□□□ 0.17
NELFE-213ENST00000494956 SCAF1Q9H7N4 1312 aaKnown RBP16.09■□□□□ 0.17
NELFE-213ENST00000494956 SPHKAPQ2M3C7 1700 aa16.08■□□□□ 0.17
NELFE-213ENST00000494956 ZFYVE9O95405 1425 aa16.08■□□□□ 0.16
NELFE-213ENST00000494956 RIMS2Q9UQ26 1411 aa16.08■□□□□ 0.16
NELFE-213ENST00000494956 ADRA2BP18089 450 aa16.06■□□□□ 0.16
NELFE-213ENST00000494956 RBM33Q96EV2 1170 aaKnown RBP16.06■□□□□ 0.16
NELFE-213ENST00000494956 BCANQ96GW7 911 aa16.06■□□□□ 0.16
NELFE-213ENST00000494956 HFM1A2PYH4 1435 aa16.05■□□□□ 0.16
NELFE-213ENST00000494956 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
NELFE-213ENST00000494956 TOM1O60784 492 aa16.03■□□□□ 0.16
NELFE-213ENST00000494956 PPP1R15AO75807 674 aaPredicted RBP16.03■□□□□ 0.16
NELFE-213ENST00000494956 CLTCL1P53675 1640 aa16.02■□□□□ 0.16
NELFE-213ENST00000494956 PLEKHG1Q9ULL1 1385 aa16.01■□□□□ 0.15
NELFE-213ENST00000494956 HSPA1LP34931 641 aa16.01■□□□□ 0.15
NELFE-213ENST00000494956 KCNA6P17658 529 aa16■□□□□ 0.15
NELFE-213ENST00000494956 CHD2O14647 1828 aaKnown RBP15.99■□□□□ 0.15
NELFE-213ENST00000494956 TMEM94Q12767 1356 aa15.99■□□□□ 0.15
NELFE-213ENST00000494956 NWD1Q149M9 1564 aa15.98■□□□□ 0.15
NELFE-213ENST00000494956 ADAMTS13Q76LX8 1427 aa15.98■□□□□ 0.15
NELFE-213ENST00000494956 PROSER2Q86WR7 435 aaPredicted RBP15.98■□□□□ 0.15
NELFE-213ENST00000494956 TRPM2O94759 1503 aa15.97■□□□□ 0.15
NELFE-213ENST00000494956 DISP3Q9P2K9 1392 aa15.97■□□□□ 0.15
NELFE-213ENST00000494956 HDGFP51858 240 aaKnown RBP15.96■□□□□ 0.15
NELFE-213ENST00000494956 ZNF326Q5BKZ1 582 aaKnown RBP15.96■□□□□ 0.15
NELFE-213ENST00000494956 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.96■□□□□ 0.15
NELFE-213ENST00000494956 SLC4A1APQ9BWU0 796 aaKnown RBP15.96■□□□□ 0.15
NELFE-213ENST00000494956 KIF1BO60333 1816 aa15.96■□□□□ 0.14
NELFE-213ENST00000494956 NRXN3Q9Y4C0 1643 aa15.94■□□□□ 0.14
NELFE-213ENST00000494956 NKTRP30414 1462 aaKnown RBP15.93■□□□□ 0.14
NELFE-213ENST00000494956 TBX22Q9Y458 520 aa15.93■□□□□ 0.14
NELFE-213ENST00000494956 ILDR2Q71H61 639 aa15.92■□□□□ 0.14
NELFE-213ENST00000494956 NEXMIFQ5QGS0 1516 aa15.92■□□□□ 0.14
NELFE-213ENST00000494956 PTPRUQ92729 1446 aa15.92■□□□□ 0.14
NELFE-213ENST00000494956 DIP2AQ14689 1571 aa15.9■□□□□ 0.14
NELFE-213ENST00000494956 SETBP1Q9Y6X0 1596 aa15.88■□□□□ 0.13
NELFE-213ENST00000494956 METP08581 1390 aa15.87■□□□□ 0.13
NELFE-213ENST00000494956 ROBO1Q9Y6N7 1651 aa15.87■□□□□ 0.13
NELFE-213ENST00000494956 MPHOSPH9Q99550 1183 aa15.87■□□□□ 0.13
NELFE-213ENST00000494956 AMOTL2Q9Y2J4 779 aa15.87■□□□□ 0.13
NELFE-213ENST00000494956 SETD5Q9C0A6 1442 aa15.86■□□□□ 0.13
NELFE-213ENST00000494956 MED1Q15648 1581 aaPredicted RBP15.86■□□□□ 0.13
NELFE-213ENST00000494956 MSH6P52701 1360 aa15.86■□□□□ 0.13
NELFE-213ENST00000494956 PPLO60437 1756 aa15.85■□□□□ 0.13
NELFE-213ENST00000494956 XRN1Q8IZH2 1706 aaKnown RBP15.85■□□□□ 0.13
NELFE-213ENST00000494956 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.85■□□□□ 0.13
NELFE-213ENST00000494956 C14orf37Q86TY3 774 aa15.84■□□□□ 0.13
NELFE-213ENST00000494956 PIK3R4Q99570 1358 aa15.84■□□□□ 0.13
NELFE-213ENST00000494956 RAB3GAP2Q9H2M9 1393 aa15.83■□□□□ 0.12
NELFE-213ENST00000494956 FAM135BQ49AJ0 1406 aa15.83■□□□□ 0.12
NELFE-213ENST00000494956 SETD1AO15047 1707 aaKnown RBP15.82■□□□□ 0.12
NELFE-213ENST00000494956 RGL3Q3MIN7 710 aa15.82■□□□□ 0.12
NELFE-213ENST00000494956 SLAIN2Q9P270 581 aa15.81■□□□□ 0.12
NELFE-213ENST00000494956 CCDC144AA2RUR9 1427 aa15.8■□□□□ 0.12
NELFE-213ENST00000494956 SPATA31E1Q6ZUB1 1445 aa15.78■□□□□ 0.12
NELFE-213ENST00000494956 ADGRF5Q8IZF2 1346 aa15.78■□□□□ 0.12
NELFE-213ENST00000494956 IFT172Q9UG01 1749 aa15.78■□□□□ 0.12
NELFE-213ENST00000494956 VGFO15240 615 aaPredicted RBP15.78■□□□□ 0.12
NELFE-213ENST00000494956 NCOA3Q9Y6Q9 1424 aa15.77■□□□□ 0.12
NELFE-213ENST00000494956 PHLPP1O60346 1717 aa15.77■□□□□ 0.12
NELFE-213ENST00000494956 C19orf44Q9H6X5 657 aa15.77■□□□□ 0.12
NELFE-213ENST00000494956 NALCNQ8IZF0 1738 aa15.77■□□□□ 0.11
NELFE-213ENST00000494956 RPGRIP1LQ68CZ1 1315 aa15.76■□□□□ 0.11
NELFE-213ENST00000494956 ATF3P18847 181 aa15.75■□□□□ 0.11
NELFE-213ENST00000494956 CADPS2Q86UW7 1296 aa15.73■□□□□ 0.11
NELFE-213ENST00000494956 ROBO2Q9HCK4 1378 aa15.73■□□□□ 0.11
NELFE-213ENST00000494956 COL16A1Q07092 1604 aaPredicted RBP15.72■□□□□ 0.11
NELFE-213ENST00000494956 MST1RQ04912 1400 aa15.7■□□□□ 0.1
NELFE-213ENST00000494956 ADGRL3Q9HAR2 1447 aa15.7■□□□□ 0.1
NELFE-213ENST00000494956 ASXL1Q8IXJ9 1541 aa15.7■□□□□ 0.1
NELFE-213ENST00000494956 BRINP3Q76B58 766 aa15.7■□□□□ 0.1
NELFE-213ENST00000494956 TMEM132EQ6IEE7 984 aa15.69■□□□□ 0.1
NELFE-213ENST00000494956 DDX17Q92841 729 aaKnown RBP15.69■□□□□ 0.1
NELFE-213ENST00000494956 STK26Q9P289 416 aa15.69■□□□□ 0.1
NELFE-213ENST00000494956 DCCP43146 1447 aa15.68■□□□□ 0.1
NELFE-213ENST00000494956 PTCH1Q13635 1447 aa15.68■□□□□ 0.1
NELFE-213ENST00000494956 ANKRD30BQ9BXX2 1392 aa15.68■□□□□ 0.1
NELFE-213ENST00000494956 RGS17Q9UGC6 210 aaPredicted RBP15.68■□□□□ 0.1
NELFE-213ENST00000494956 AHDC1Q5TGY3 1603 aaPredicted RBP15.67■□□□□ 0.1
NELFE-213ENST00000494956 PIK3C2GO75747 1445 aa15.67■□□□□ 0.1
NELFE-213ENST00000494956 SOCS7O14512 581 aa15.66■□□□□ 0.1
NELFE-213ENST00000494956 ACIN1Q9UKV3 1341 aaKnown RBP15.66■□□□□ 0.1
NELFE-213ENST00000494956 WAPLQ7Z5K2 1190 aa15.65■□□□□ 0.1
NELFE-213ENST00000494956 JCADQ9P266 1359 aa15.64■□□□□ 0.09
NELFE-213ENST00000494956 PLEKHH1Q9ULM0 1364 aa15.64■□□□□ 0.09
NELFE-213ENST00000494956 CFAP70Q5T0N1 1121 aa15.64■□□□□ 0.09
NELFE-213ENST00000494956 PIAS4Q8N2W9 510 aaPredicted RBP15.64■□□□□ 0.09
NELFE-213ENST00000494956 NHSL1Q5SYE7 1610 aa15.64■□□□□ 0.09
NELFE-213ENST00000494956 PRAG1Q86YV5 1406 aa15.63■□□□□ 0.09
NELFE-213ENST00000494956 C1orf167Q5SNV9 1468 aa15.63■□□□□ 0.09
NELFE-213ENST00000494956 LRP6O75581 1613 aa15.62■□□□□ 0.09
NELFE-213ENST00000494956 ORAI2Q96SN7 254 aa15.62■□□□□ 0.09
NELFE-213ENST00000494956 KDM2AQ9Y2K7 1162 aa15.62■□□□□ 0.09
NELFE-213ENST00000494956 NRXN1Q9ULB1 1477 aa15.62■□□□□ 0.09
NELFE-213ENST00000494956 KNDC1Q76NI1 1749 aa15.62■□□□□ 0.09
NELFE-213ENST00000494956 LRPPRCP42704 1394 aaKnown RBP15.62■□□□□ 0.09
NELFE-213ENST00000494956 SHPRHQ149N8 1683 aa15.61■□□□□ 0.09
NELFE-213ENST00000494956 MYOM2P54296 1465 aa15.61■□□□□ 0.09
NELFE-213ENST00000494956 HRCP23327 699 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms