RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TRPM2O94759 1503 aa23.6■■□□□ 1.37
LIME1-209ENST00000494776 ZNF326Q5BKZ1 582 aaKnown RBP23.6■■□□□ 1.37
LIME1-209ENST00000494776 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.6■■□□□ 1.37
LIME1-209ENST00000494776 MYO5BQ9ULV0 1848 aa23.59■■□□□ 1.37
LIME1-209ENST00000494776 SENP3Q9H4L4 574 aaPredicted RBP23.58■■□□□ 1.37
LIME1-209ENST00000494776 LTBP4Q8N2S1 1624 aa23.58■■□□□ 1.36
LIME1-209ENST00000494776 NUTM2DQ5VT03 806 aaPredicted RBP23.57■■□□□ 1.36
LIME1-209ENST00000494776 ZFYVE9O95405 1425 aa23.56■■□□□ 1.36
LIME1-209ENST00000494776 CLTCL1P53675 1640 aa23.55■■□□□ 1.36
LIME1-209ENST00000494776 HRCP23327 699 aa23.54■■□□□ 1.36
LIME1-209ENST00000494776 SLC26A8Q96RN1 970 aa23.53■■□□□ 1.36
LIME1-209ENST00000494776 IQSEC2Q5JU85 1478 aa23.52■■□□□ 1.36
LIME1-209ENST00000494776 PLEKHG1Q9ULL1 1385 aa23.51■■□□□ 1.35
LIME1-209ENST00000494776 CCDC144AA2RUR9 1427 aa23.5■■□□□ 1.35
LIME1-209ENST00000494776 KIF1BO60333 1816 aa23.49■■□□□ 1.35
LIME1-209ENST00000494776 CPS1P31327 1500 aa23.49■■□□□ 1.35
LIME1-209ENST00000494776 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
LIME1-209ENST00000494776 RGL3Q3MIN7 710 aa23.42■■□□□ 1.34
LIME1-209ENST00000494776 TBX22Q9Y458 520 aa23.42■■□□□ 1.34
LIME1-209ENST00000494776 RPGRIP1LQ68CZ1 1315 aa23.41■■□□□ 1.34
LIME1-209ENST00000494776 VGFO15240 615 aaPredicted RBP23.41■■□□□ 1.34
LIME1-209ENST00000494776 KCNA6P17658 529 aa23.41■■□□□ 1.34
LIME1-209ENST00000494776 NEXMIFQ5QGS0 1516 aa23.39■■□□□ 1.34
LIME1-209ENST00000494776 STRCP1A6NGW2 1772 aa23.38■■□□□ 1.33
LIME1-209ENST00000494776 UBAP1LF5GYI3 381 aa23.38■■□□□ 1.33
LIME1-209ENST00000494776 ADAMTS13Q76LX8 1427 aa23.36■■□□□ 1.33
LIME1-209ENST00000494776 PROSER2Q86WR7 435 aaPredicted RBP23.36■■□□□ 1.33
LIME1-209ENST00000494776 LRRC7Q96NW7 1537 aa23.36■■□□□ 1.33
LIME1-209ENST00000494776 DIP2AQ14689 1571 aa23.35■■□□□ 1.33
LIME1-209ENST00000494776 SPATA31E1Q6ZUB1 1445 aa23.33■■□□□ 1.33
LIME1-209ENST00000494776 ANKRD30BQ9BXX2 1392 aa23.33■■□□□ 1.33
LIME1-209ENST00000494776 SETBP1Q9Y6X0 1596 aa23.32■■□□□ 1.32
LIME1-209ENST00000494776 TOM1O60784 492 aa23.32■■□□□ 1.32
LIME1-209ENST00000494776 PIK3R4Q99570 1358 aa23.31■■□□□ 1.32
LIME1-209ENST00000494776 NKTRP30414 1462 aaKnown RBP23.3■■□□□ 1.32
LIME1-209ENST00000494776 NWD1Q149M9 1564 aa23.29■■□□□ 1.32
LIME1-209ENST00000494776 RBM33Q96EV2 1170 aaKnown RBP23.29■■□□□ 1.32
LIME1-209ENST00000494776 PPLO60437 1756 aa23.29■■□□□ 1.32
LIME1-209ENST00000494776 SCAF1Q9H7N4 1312 aaKnown RBP23.29■■□□□ 1.32
LIME1-209ENST00000494776 TMEM94Q12767 1356 aa23.28■■□□□ 1.32
LIME1-209ENST00000494776 AMOTL2Q9Y2J4 779 aa23.28■■□□□ 1.32
LIME1-209ENST00000494776 NRXN3Q9Y4C0 1643 aa23.28■■□□□ 1.32
LIME1-209ENST00000494776 CHD2O14647 1828 aaKnown RBP23.28■■□□□ 1.32
LIME1-209ENST00000494776 PIP4K2BP78356 416 aa23.26■■□□□ 1.31
LIME1-209ENST00000494776 ADGRF5Q8IZF2 1346 aa23.26■■□□□ 1.31
LIME1-209ENST00000494776 METP08581 1390 aa23.25■■□□□ 1.31
LIME1-209ENST00000494776 C14orf37Q86TY3 774 aa23.24■■□□□ 1.31
LIME1-209ENST00000494776 PTPRUQ92729 1446 aa23.23■■□□□ 1.31
LIME1-209ENST00000494776 ALKQ9UM73 1620 aa23.21■■□□□ 1.31
LIME1-209ENST00000494776 MSH6P52701 1360 aa23.2■■□□□ 1.3
LIME1-209ENST00000494776 IFT172Q9UG01 1749 aa23.19■■□□□ 1.3
LIME1-209ENST00000494776 XIRP1Q702N8 1843 aaKnown RBP23.19■■□□□ 1.3
LIME1-209ENST00000494776 DISP3Q9P2K9 1392 aa23.18■■□□□ 1.3
LIME1-209ENST00000494776 KDM2AQ9Y2K7 1162 aa23.18■■□□□ 1.3
LIME1-209ENST00000494776 DCAF11Q8TEB1 546 aa23.17■■□□□ 1.3
LIME1-209ENST00000494776 NCOA3Q9Y6Q9 1424 aa23.16■■□□□ 1.3
LIME1-209ENST00000494776 PIK3C2GO75747 1445 aa23.15■■□□□ 1.3
LIME1-209ENST00000494776 XRN1Q8IZH2 1706 aaKnown RBP23.14■■□□□ 1.3
LIME1-209ENST00000494776 MYOM2P54296 1465 aa23.14■■□□□ 1.29
LIME1-209ENST00000494776 SETD1AO15047 1707 aaKnown RBP23.12■■□□□ 1.29
LIME1-209ENST00000494776 STAC3Q96MF2 364 aa23.12■■□□□ 1.29
LIME1-209ENST00000494776 C19orf44Q9H6X5 657 aa23.12■■□□□ 1.29
LIME1-209ENST00000494776 ATF3P18847 181 aa23.11■■□□□ 1.29
LIME1-209ENST00000494776 TMEM132EQ6IEE7 984 aa23.11■■□□□ 1.29
LIME1-209ENST00000494776 C14orf93Q9H972 538 aaKnown RBP23.11■■□□□ 1.29
LIME1-209ENST00000494776 STK26Q9P289 416 aa23.11■■□□□ 1.29
LIME1-209ENST00000494776 DHX57Q6P158 1386 aaKnown RBP23.11■■□□□ 1.29
LIME1-209ENST00000494776 CFAP70Q5T0N1 1121 aa23.1■■□□□ 1.29
LIME1-209ENST00000494776 NRXN1Q9ULB1 1477 aa23.09■■□□□ 1.29
LIME1-209ENST00000494776 NEUROD1Q13562 356 aa23.08■■□□□ 1.29
LIME1-209ENST00000494776 CADPS2Q86UW7 1296 aa23.08■■□□□ 1.29
LIME1-209ENST00000494776 SIN3AQ96ST3 1273 aa23.07■■□□□ 1.28
LIME1-209ENST00000494776 PCGF6Q9BYE7 350 aa23.07■■□□□ 1.28
LIME1-209ENST00000494776 SLAIN2Q9P270 581 aa23.07■■□□□ 1.28
LIME1-209ENST00000494776 PTCH1Q13635 1447 aa23.07■■□□□ 1.28
LIME1-209ENST00000494776 ROBO2Q9HCK4 1378 aa23.06■■□□□ 1.28
LIME1-209ENST00000494776 HSPA1LP34931 641 aa23.06■■□□□ 1.28
LIME1-209ENST00000494776 LRPPRCP42704 1394 aaKnown RBP23.04■■□□□ 1.28
LIME1-209ENST00000494776 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.03■■□□□ 1.28
LIME1-209ENST00000494776 LAMC1P11047 1609 aa23.03■■□□□ 1.28
LIME1-209ENST00000494776 YTHDC2Q9H6S0 1430 aaKnown RBP23.02■■□□□ 1.28
LIME1-209ENST00000494776 ABCC11Q96J66 1382 aa23.01■■□□□ 1.27
LIME1-209ENST00000494776 FAM135BQ49AJ0 1406 aa23.01■■□□□ 1.27
LIME1-209ENST00000494776 ADGRL3Q9HAR2 1447 aa23.01■■□□□ 1.27
LIME1-209ENST00000494776 ASXL1Q8IXJ9 1541 aa23.01■■□□□ 1.27
LIME1-209ENST00000494776 PRAG1Q86YV5 1406 aa23■■□□□ 1.27
LIME1-209ENST00000494776 DCCP43146 1447 aa22.99■■□□□ 1.27
LIME1-209ENST00000494776 WAPLQ7Z5K2 1190 aa22.99■■□□□ 1.27
LIME1-209ENST00000494776 TECPR2O15040 1411 aa22.98■■□□□ 1.27
LIME1-209ENST00000494776 L3MBTL2Q969R5 705 aa22.97■■□□□ 1.27
LIME1-209ENST00000494776 ROBO1Q9Y6N7 1651 aa22.97■■□□□ 1.27
LIME1-209ENST00000494776 NALCNQ8IZF0 1738 aa22.96■■□□□ 1.27
LIME1-209ENST00000494776 SIRT1Q96EB6 747 aa22.94■■□□□ 1.26
LIME1-209ENST00000494776 KNDC1Q76NI1 1749 aa22.94■■□□□ 1.26
LIME1-209ENST00000494776 POGKQ9P215 609 aa22.93■■□□□ 1.26
LIME1-209ENST00000494776 TRAK1Q9UPV9 953 aa22.93■■□□□ 1.26
LIME1-209ENST00000494776 PLEKHH1Q9ULM0 1364 aa22.92■■□□□ 1.26
LIME1-209ENST00000494776 PRAM1Q96QH2 718 aa22.92■■□□□ 1.26
LIME1-209ENST00000494776 SAFB2Q14151 953 aaKnown RBP eCLIP22.91■■□□□ 1.26
LIME1-209ENST00000494776 MST1RQ04912 1400 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms