RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KIF1BO60333 1816 aa37.02■■■■□ 3.52
UPF3A-209ENST00000492270 XIRP1Q702N8 1843 aaKnown RBP37.01■■■■□ 3.52
UPF3A-209ENST00000492270 LRRC7Q96NW7 1537 aa37.01■■■■□ 3.52
UPF3A-209ENST00000492270 SLC26A8Q96RN1 970 aa37■■■■□ 3.51
UPF3A-209ENST00000492270 SLC4A1APQ9BWU0 796 aaKnown RBP36.99■■■■□ 3.51
UPF3A-209ENST00000492270 PLEKHG1Q9ULL1 1385 aa36.98■■■■□ 3.51
UPF3A-209ENST00000492270 UBAP1LF5GYI3 381 aa36.97■■■■□ 3.51
UPF3A-209ENST00000492270 PPP1R15AO75807 674 aaPredicted RBP36.97■■■■□ 3.51
UPF3A-209ENST00000492270 NUTM2DQ5VT03 806 aaPredicted RBP36.97■■■■□ 3.51
UPF3A-209ENST00000492270 BCANQ96GW7 911 aa36.94■■■■□ 3.5
UPF3A-209ENST00000492270 SETD5Q9C0A6 1442 aa36.93■■■■□ 3.5
UPF3A-209ENST00000492270 NWD1Q149M9 1564 aa36.91■■■■□ 3.5
UPF3A-209ENST00000492270 HDGFP51858 240 aaKnown RBP36.91■■■■□ 3.5
UPF3A-209ENST00000492270 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.91■■■■□ 3.5
UPF3A-209ENST00000492270 CHD2O14647 1828 aaKnown RBP36.91■■■■□ 3.5
UPF3A-209ENST00000492270 ALKQ9UM73 1620 aa36.89■■■■□ 3.5
UPF3A-209ENST00000492270 FOXD1Q16676 465 aa36.88■■■■□ 3.49
UPF3A-209ENST00000492270 NEXMIFQ5QGS0 1516 aa36.86■■■■□ 3.49
UPF3A-209ENST00000492270 ADAMTS13Q76LX8 1427 aa36.85■■■■□ 3.49
UPF3A-209ENST00000492270 NRXN3Q9Y4C0 1643 aa36.85■■■■□ 3.49
UPF3A-209ENST00000492270 DIP2AQ14689 1571 aa36.84■■■■□ 3.49
UPF3A-209ENST00000492270 ZNF326Q5BKZ1 582 aaKnown RBP36.84■■■■□ 3.49
UPF3A-209ENST00000492270 KCNA6P17658 529 aa36.83■■■■□ 3.49
UPF3A-209ENST00000492270 RAB3GAP2Q9H2M9 1393 aa36.82■■■■□ 3.49
UPF3A-209ENST00000492270 MPHOSPH9Q99550 1183 aa36.82■■■■□ 3.48
UPF3A-209ENST00000492270 NKTRP30414 1462 aaKnown RBP36.79■■■■□ 3.48
UPF3A-209ENST00000492270 TOM1O60784 492 aa36.77■■■■□ 3.48
UPF3A-209ENST00000492270 SETBP1Q9Y6X0 1596 aa36.77■■■■□ 3.48
UPF3A-209ENST00000492270 PIP4K2BP78356 416 aa36.76■■■■□ 3.48
UPF3A-209ENST00000492270 TBX22Q9Y458 520 aa36.76■■■■□ 3.48
UPF3A-209ENST00000492270 SCAF1Q9H7N4 1312 aaKnown RBP36.75■■■■□ 3.47
UPF3A-209ENST00000492270 PPLO60437 1756 aa36.75■■■■□ 3.47
UPF3A-209ENST00000492270 TMEM94Q12767 1356 aa36.74■■■■□ 3.47
UPF3A-209ENST00000492270 RBM33Q96EV2 1170 aaKnown RBP36.72■■■■□ 3.47
UPF3A-209ENST00000492270 PROSER2Q86WR7 435 aaPredicted RBP36.7■■■■□ 3.47
UPF3A-209ENST00000492270 CCDC144AA2RUR9 1427 aa36.68■■■■□ 3.46
UPF3A-209ENST00000492270 ACIN1Q9UKV3 1341 aaKnown RBP36.67■■■■□ 3.46
UPF3A-209ENST00000492270 PTPRUQ92729 1446 aa36.65■■■■□ 3.46
UPF3A-209ENST00000492270 XRN1Q8IZH2 1706 aaKnown RBP36.64■■■■□ 3.46
UPF3A-209ENST00000492270 IFT172Q9UG01 1749 aa36.64■■■■□ 3.46
UPF3A-209ENST00000492270 PIK3R4Q99570 1358 aa36.64■■■■□ 3.46
UPF3A-209ENST00000492270 SETD1AO15047 1707 aaKnown RBP36.63■■■■□ 3.45
UPF3A-209ENST00000492270 SPATA31E1Q6ZUB1 1445 aa36.59■■■■□ 3.45
UPF3A-209ENST00000492270 METP08581 1390 aa36.57■■■■□ 3.45
UPF3A-209ENST00000492270 HSPA1LP34931 641 aa36.56■■■■□ 3.44
UPF3A-209ENST00000492270 RPGRIP1LQ68CZ1 1315 aa36.56■■■■□ 3.44
UPF3A-209ENST00000492270 AMOTL2Q9Y2J4 779 aa36.54■■■■□ 3.44
UPF3A-209ENST00000492270 VGFO15240 615 aaPredicted RBP36.52■■■■□ 3.44
UPF3A-209ENST00000492270 RGL3Q3MIN7 710 aa36.51■■■■□ 3.44
UPF3A-209ENST00000492270 MSH6P52701 1360 aa36.51■■■■□ 3.43
UPF3A-209ENST00000492270 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.51■■■■□ 3.43
UPF3A-209ENST00000492270 ROBO1Q9Y6N7 1651 aa36.48■■■■□ 3.43
UPF3A-209ENST00000492270 HRCP23327 699 aa36.47■■■■□ 3.43
UPF3A-209ENST00000492270 NCOA3Q9Y6Q9 1424 aa36.46■■■■□ 3.43
UPF3A-209ENST00000492270 ADGRF5Q8IZF2 1346 aa36.42■■■■□ 3.42
UPF3A-209ENST00000492270 C14orf37Q86TY3 774 aa36.42■■■■□ 3.42
UPF3A-209ENST00000492270 ANKRD30BQ9BXX2 1392 aa36.41■■■■□ 3.42
UPF3A-209ENST00000492270 FAM135BQ49AJ0 1406 aa36.39■■■■□ 3.42
UPF3A-209ENST00000492270 NALCNQ8IZF0 1738 aa36.39■■■■□ 3.42
UPF3A-209ENST00000492270 C19orf44Q9H6X5 657 aa36.32■■■■□ 3.4
UPF3A-209ENST00000492270 SLAIN2Q9P270 581 aa36.32■■■■□ 3.4
UPF3A-209ENST00000492270 PIK3C2GO75747 1445 aa36.32■■■■□ 3.4
UPF3A-209ENST00000492270 DISP3Q9P2K9 1392 aa36.31■■■■□ 3.4
UPF3A-209ENST00000492270 ASXL1Q8IXJ9 1541 aa36.31■■■■□ 3.4
UPF3A-209ENST00000492270 PTCH1Q13635 1447 aa36.3■■■■□ 3.4
UPF3A-209ENST00000492270 MYOM2P54296 1465 aa36.28■■■■□ 3.4
UPF3A-209ENST00000492270 ROBO2Q9HCK4 1378 aa36.27■■■■□ 3.4
UPF3A-209ENST00000492270 PRAG1Q86YV5 1406 aa36.27■■■■□ 3.4
UPF3A-209ENST00000492270 PHLPP1O60346 1717 aa36.27■■■■□ 3.4
UPF3A-209ENST00000492270 MED1Q15648 1581 aaPredicted RBP36.27■■■■□ 3.4
UPF3A-209ENST00000492270 ADGRL3Q9HAR2 1447 aa36.26■■■■□ 3.4
UPF3A-209ENST00000492270 NRXN1Q9ULB1 1477 aa36.26■■■■□ 3.4
UPF3A-209ENST00000492270 DCCP43146 1447 aa36.25■■■■□ 3.39
UPF3A-209ENST00000492270 ATF3P18847 181 aa36.25■■■■□ 3.39
UPF3A-209ENST00000492270 CADPS2Q86UW7 1296 aa36.25■■■■□ 3.39
UPF3A-209ENST00000492270 KNDC1Q76NI1 1749 aa36.23■■■■□ 3.39
UPF3A-209ENST00000492270 LAMC1P11047 1609 aa36.23■■■■□ 3.39
UPF3A-209ENST00000492270 MST1RQ04912 1400 aa36.17■■■■□ 3.38
UPF3A-209ENST00000492270 TMEM132EQ6IEE7 984 aa36.16■■■■□ 3.38
UPF3A-209ENST00000492270 COL16A1Q07092 1604 aaPredicted RBP36.16■■■■□ 3.38
UPF3A-209ENST00000492270 STK26Q9P289 416 aa36.14■■■■□ 3.38
UPF3A-209ENST00000492270 TECPR2O15040 1411 aa36.14■■■■□ 3.38
UPF3A-209ENST00000492270 LRPPRCP42704 1394 aaKnown RBP36.14■■■■□ 3.38
UPF3A-209ENST00000492270 AHDC1Q5TGY3 1603 aaPredicted RBP36.12■■■■□ 3.37
UPF3A-209ENST00000492270 CFAP70Q5T0N1 1121 aa36.11■■■■□ 3.37
UPF3A-209ENST00000492270 C14orf93Q9H972 538 aaKnown RBP36.11■■■■□ 3.37
UPF3A-209ENST00000492270 YTHDC2Q9H6S0 1430 aaKnown RBP36.1■■■■□ 3.37
UPF3A-209ENST00000492270 DHX57Q6P158 1386 aaKnown RBP36.09■■■■□ 3.37
UPF3A-209ENST00000492270 BRINP3Q76B58 766 aa36.08■■■■□ 3.37
UPF3A-209ENST00000492270 DCAF11Q8TEB1 546 aa36.08■■■■□ 3.37
UPF3A-209ENST00000492270 ABCC11Q96J66 1382 aa36.07■■■■□ 3.36
UPF3A-209ENST00000492270 KDM2AQ9Y2K7 1162 aa36.07■■■■□ 3.36
UPF3A-209ENST00000492270 NHSL1Q5SYE7 1610 aa36.07■■■■□ 3.36
UPF3A-209ENST00000492270 CDC42BPGQ6DT37 1551 aa36.05■■■■□ 3.36
UPF3A-209ENST00000492270 PLEKHH1Q9ULM0 1364 aa36.04■■■■□ 3.36
UPF3A-209ENST00000492270 WAPLQ7Z5K2 1190 aa36.04■■■■□ 3.36
UPF3A-209ENST00000492270 ADGRB1O14514 1584 aa36.02■■■■□ 3.36
UPF3A-209ENST00000492270 C1orf167Q5SNV9 1468 aa36.01■■■■□ 3.36
UPF3A-209ENST00000492270 ILDR2Q71H61 639 aa36.01■■■■□ 3.36
UPF3A-209ENST00000492270 SHPRHQ149N8 1683 aa35.96■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms