RNA–Protein interactions for RNA: ENST00000491802.1

CPNE9-204, Transcript of copine family member 9, humanhuman

TSL 4

Gene CPNE9, Length 584 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9-204ENST00000491802 CPS1P31327 1500 aa34.54■■■■□ 3.12
CPNE9-204ENST00000491802 FOXD1Q16676 465 aa34.51■■■■□ 3.12
CPNE9-204ENST00000491802 ILDR1Q86SU0 546 aaPredicted RBP34.51■■■■□ 3.12
CPNE9-204ENST00000491802 RIMS2Q9UQ26 1411 aa34.5■■■■□ 3.11
CPNE9-204ENST00000491802 HDGFP51858 240 aaKnown RBP34.5■■■■□ 3.11
CPNE9-204ENST00000491802 KIF1BO60333 1816 aa34.48■■■■□ 3.11
CPNE9-204ENST00000491802 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.45■■■■□ 3.11
CPNE9-204ENST00000491802 PLEKHG1Q9ULL1 1385 aa34.45■■■■□ 3.11
CPNE9-204ENST00000491802 STRCP1A6NGW2 1772 aa34.44■■■■□ 3.1
CPNE9-204ENST00000491802 HRCP23327 699 aa34.44■■■■□ 3.1
CPNE9-204ENST00000491802 PPP1R15AO75807 674 aaPredicted RBP34.37■■■■□ 3.09
CPNE9-204ENST00000491802 CCDC144AA2RUR9 1427 aa34.37■■■■□ 3.09
CPNE9-204ENST00000491802 DIP2AQ14689 1571 aa34.34■■■■□ 3.09
CPNE9-204ENST00000491802 ZNF326Q5BKZ1 582 aaKnown RBP34.34■■■■□ 3.09
CPNE9-204ENST00000491802 NEXMIFQ5QGS0 1516 aa34.33■■■■□ 3.09
CPNE9-204ENST00000491802 TRIM26Q12899 539 aaPredicted RBP34.32■■■■□ 3.08
CPNE9-204ENST00000491802 NWD1Q149M9 1564 aa34.32■■■■□ 3.08
CPNE9-204ENST00000491802 NUTM2DQ5VT03 806 aaPredicted RBP34.31■■■■□ 3.08
CPNE9-204ENST00000491802 LRRC7Q96NW7 1537 aa34.3■■■■□ 3.08
CPNE9-204ENST00000491802 SENP3Q9H4L4 574 aaPredicted RBP34.28■■■■□ 3.08
CPNE9-204ENST00000491802 ADAMTS13Q76LX8 1427 aa34.28■■■■□ 3.08
CPNE9-204ENST00000491802 SETBP1Q9Y6X0 1596 aa34.28■■■■□ 3.08
CPNE9-204ENST00000491802 CHD2O14647 1828 aaKnown RBP34.27■■■■□ 3.08
CPNE9-204ENST00000491802 BCANQ96GW7 911 aa34.27■■■■□ 3.08
CPNE9-204ENST00000491802 SLC26A8Q96RN1 970 aa34.27■■■■□ 3.08
CPNE9-204ENST00000491802 TBX22Q9Y458 520 aa34.27■■■■□ 3.08
CPNE9-204ENST00000491802 KCNA6P17658 529 aa34.25■■■■□ 3.07
CPNE9-204ENST00000491802 NRXN3Q9Y4C0 1643 aa34.25■■■■□ 3.07
CPNE9-204ENST00000491802 RPGRIP1LQ68CZ1 1315 aa34.24■■■■□ 3.07
CPNE9-204ENST00000491802 PIK3R4Q99570 1358 aa34.23■■■■□ 3.07
CPNE9-204ENST00000491802 NKTRP30414 1462 aaKnown RBP34.23■■■■□ 3.07
CPNE9-204ENST00000491802 PPLO60437 1756 aa34.22■■■■□ 3.07
CPNE9-204ENST00000491802 XIRP1Q702N8 1843 aaKnown RBP34.21■■■■□ 3.07
CPNE9-204ENST00000491802 SPATA31E1Q6ZUB1 1445 aa34.21■■■■□ 3.07
CPNE9-204ENST00000491802 ANKRD30BQ9BXX2 1392 aa34.2■■■■□ 3.07
CPNE9-204ENST00000491802 IFT172Q9UG01 1749 aa34.14■■■■□ 3.06
CPNE9-204ENST00000491802 VGFO15240 615 aaPredicted RBP34.13■■■■□ 3.05
CPNE9-204ENST00000491802 RGL3Q3MIN7 710 aa34.12■■■■□ 3.05
CPNE9-204ENST00000491802 UBAP1LF5GYI3 381 aa34.11■■■■□ 3.05
CPNE9-204ENST00000491802 ALKQ9UM73 1620 aa34.1■■■■□ 3.05
CPNE9-204ENST00000491802 TOM1O60784 492 aa34.08■■■■□ 3.05
CPNE9-204ENST00000491802 SETD1AO15047 1707 aaKnown RBP34.07■■■■□ 3.05
CPNE9-204ENST00000491802 TMEM94Q12767 1356 aa34.07■■■■□ 3.04
CPNE9-204ENST00000491802 XRN1Q8IZH2 1706 aaKnown RBP34.06■■■■□ 3.04
CPNE9-204ENST00000491802 NCOA3Q9Y6Q9 1424 aa34.04■■■■□ 3.04
CPNE9-204ENST00000491802 PTPRUQ92729 1446 aa34.03■■■■□ 3.04
CPNE9-204ENST00000491802 PROSER2Q86WR7 435 aaPredicted RBP34.02■■■■□ 3.04
CPNE9-204ENST00000491802 METP08581 1390 aa33.98■■■■□ 3.03
CPNE9-204ENST00000491802 ADGRF5Q8IZF2 1346 aa33.97■■■■□ 3.03
CPNE9-204ENST00000491802 AMOTL2Q9Y2J4 779 aa33.96■■■■□ 3.03
CPNE9-204ENST00000491802 PRAG1Q86YV5 1406 aa33.96■■■■□ 3.03
CPNE9-204ENST00000491802 DHX57Q6P158 1386 aaKnown RBP33.95■■■■□ 3.02
CPNE9-204ENST00000491802 MYOM2P54296 1465 aa33.95■■■■□ 3.02
CPNE9-204ENST00000491802 NRXN1Q9ULB1 1477 aa33.93■■■■□ 3.02
CPNE9-204ENST00000491802 PIK3C2GO75747 1445 aa33.92■■■■□ 3.02
CPNE9-204ENST00000491802 MSH6P52701 1360 aa33.89■■■■□ 3.02
CPNE9-204ENST00000491802 RBM33Q96EV2 1170 aaKnown RBP33.88■■■■□ 3.01
CPNE9-204ENST00000491802 PTCH1Q13635 1447 aa33.87■■■■□ 3.01
CPNE9-204ENST00000491802 LAMC1P11047 1609 aa33.85■■■■□ 3.01
CPNE9-204ENST00000491802 PIP4K2BP78356 416 aa33.83■■■■□ 3.01
CPNE9-204ENST00000491802 STAC3Q96MF2 364 aa33.83■■■■□ 3.01
CPNE9-204ENST00000491802 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.83■■■■□ 3.01
CPNE9-204ENST00000491802 PCGF6Q9BYE7 350 aa33.82■■■■□ 3
CPNE9-204ENST00000491802 FAM135BQ49AJ0 1406 aa33.81■■■■□ 3
CPNE9-204ENST00000491802 DCCP43146 1447 aa33.8■■■■□ 3
CPNE9-204ENST00000491802 DCAF11Q8TEB1 546 aa33.8■■■■□ 3
CPNE9-204ENST00000491802 C19orf44Q9H6X5 657 aa33.8■■■■□ 3
CPNE9-204ENST00000491802 ASXL1Q8IXJ9 1541 aa33.79■■■■□ 3
CPNE9-204ENST00000491802 SCAF1Q9H7N4 1312 aaKnown RBP33.79■■■■□ 3
CPNE9-204ENST00000491802 KNDC1Q76NI1 1749 aa33.77■■■■□ 3
CPNE9-204ENST00000491802 TECPR2O15040 1411 aa33.77■■■■□ 3
CPNE9-204ENST00000491802 KDM2AQ9Y2K7 1162 aa33.76■■■□□ 2.99
CPNE9-204ENST00000491802 C14orf93Q9H972 538 aaKnown RBP33.75■■■□□ 2.99
CPNE9-204ENST00000491802 ADGRL3Q9HAR2 1447 aa33.74■■■□□ 2.99
CPNE9-204ENST00000491802 SIN3AQ96ST3 1273 aa33.74■■■□□ 2.99
CPNE9-204ENST00000491802 C14orf37Q86TY3 774 aa33.73■■■□□ 2.99
CPNE9-204ENST00000491802 CADPS2Q86UW7 1296 aa33.73■■■□□ 2.99
CPNE9-204ENST00000491802 ROBO1Q9Y6N7 1651 aa33.73■■■□□ 2.99
CPNE9-204ENST00000491802 NALCNQ8IZF0 1738 aa33.73■■■□□ 2.99
CPNE9-204ENST00000491802 LRPPRCP42704 1394 aaKnown RBP33.72■■■□□ 2.99
CPNE9-204ENST00000491802 ROBO2Q9HCK4 1378 aa33.72■■■□□ 2.99
CPNE9-204ENST00000491802 HSPA1LP34931 641 aa33.71■■■□□ 2.99
CPNE9-204ENST00000491802 CFAP70Q5T0N1 1121 aa33.71■■■□□ 2.99
CPNE9-204ENST00000491802 SLAIN2Q9P270 581 aa33.7■■■□□ 2.99
CPNE9-204ENST00000491802 ABCC11Q96J66 1382 aa33.7■■■□□ 2.98
CPNE9-204ENST00000491802 TMEM132EQ6IEE7 984 aa33.69■■■□□ 2.98
CPNE9-204ENST00000491802 NEUROD1Q13562 356 aa33.68■■■□□ 2.98
CPNE9-204ENST00000491802 ATF3P18847 181 aa33.66■■■□□ 2.98
CPNE9-204ENST00000491802 YTHDC2Q9H6S0 1430 aaKnown RBP33.66■■■□□ 2.98
CPNE9-204ENST00000491802 STK26Q9P289 416 aa33.64■■■□□ 2.98
CPNE9-204ENST00000491802 ADGRB1O14514 1584 aa33.63■■■□□ 2.97
CPNE9-204ENST00000491802 SIRT1Q96EB6 747 aa33.62■■■□□ 2.97
CPNE9-204ENST00000491802 MST1RQ04912 1400 aa33.6■■■□□ 2.97
CPNE9-204ENST00000491802 L3MBTL2Q969R5 705 aa33.59■■■□□ 2.97
CPNE9-204ENST00000491802 KIAA1210Q9ULL0 1709 aa33.59■■■□□ 2.97
CPNE9-204ENST00000491802 DLC1Q96QB1 1528 aa33.58■■■□□ 2.97
CPNE9-204ENST00000491802 CDC42BPGQ6DT37 1551 aa33.57■■■□□ 2.96
CPNE9-204ENST00000491802 AHDC1Q5TGY3 1603 aaPredicted RBP33.53■■■□□ 2.96
CPNE9-204ENST00000491802 PHLPP1O60346 1717 aa33.51■■■□□ 2.96
CPNE9-204ENST00000491802 PLEKHH1Q9ULM0 1364 aa33.51■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms