RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PPP1R15AO75807 674 aaPredicted RBP22.66■■□□□ 1.22
USP39-217ENST00000491659 LRRC7Q96NW7 1537 aa22.66■■□□□ 1.22
USP39-217ENST00000491659 CLTCL1P53675 1640 aa22.65■■□□□ 1.22
USP39-217ENST00000491659 PLEKHG1Q9ULL1 1385 aa22.64■■□□□ 1.22
USP39-217ENST00000491659 KIF1BO60333 1816 aa22.64■■□□□ 1.22
USP39-217ENST00000491659 BCANQ96GW7 911 aa22.64■■□□□ 1.21
USP39-217ENST00000491659 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.63■■□□□ 1.21
USP39-217ENST00000491659 NWD1Q149M9 1564 aa22.62■■□□□ 1.21
USP39-217ENST00000491659 SLC26A8Q96RN1 970 aa22.61■■□□□ 1.21
USP39-217ENST00000491659 XIRP1Q702N8 1843 aaKnown RBP22.61■■□□□ 1.21
USP39-217ENST00000491659 DIP2AQ14689 1571 aa22.59■■□□□ 1.21
USP39-217ENST00000491659 TOM1O60784 492 aa22.59■■□□□ 1.21
USP39-217ENST00000491659 SLC4A1APQ9BWU0 796 aaKnown RBP22.59■■□□□ 1.21
USP39-217ENST00000491659 NKTRP30414 1462 aaKnown RBP22.58■■□□□ 1.2
USP39-217ENST00000491659 CHD2O14647 1828 aaKnown RBP22.57■■□□□ 1.2
USP39-217ENST00000491659 SCAF1Q9H7N4 1312 aaKnown RBP22.57■■□□□ 1.2
USP39-217ENST00000491659 SENP3Q9H4L4 574 aaPredicted RBP22.56■■□□□ 1.2
USP39-217ENST00000491659 KCNA6P17658 529 aa22.55■■□□□ 1.2
USP39-217ENST00000491659 ALKQ9UM73 1620 aa22.54■■□□□ 1.2
USP39-217ENST00000491659 ZNF326Q5BKZ1 582 aaKnown RBP22.54■■□□□ 1.2
USP39-217ENST00000491659 NUTM2DQ5VT03 806 aaPredicted RBP22.54■■□□□ 1.2
USP39-217ENST00000491659 ADAMTS13Q76LX8 1427 aa22.52■■□□□ 1.2
USP39-217ENST00000491659 SETD5Q9C0A6 1442 aa22.52■■□□□ 1.2
USP39-217ENST00000491659 PIP4K2BP78356 416 aa22.52■■□□□ 1.2
USP39-217ENST00000491659 ACIN1Q9UKV3 1341 aaKnown RBP22.52■■□□□ 1.2
USP39-217ENST00000491659 NEXMIFQ5QGS0 1516 aa22.52■■□□□ 1.19
USP39-217ENST00000491659 SETBP1Q9Y6X0 1596 aa22.5■■□□□ 1.19
USP39-217ENST00000491659 NRXN3Q9Y4C0 1643 aa22.5■■□□□ 1.19
USP39-217ENST00000491659 TMEM94Q12767 1356 aa22.5■■□□□ 1.19
USP39-217ENST00000491659 TBX22Q9Y458 520 aa22.49■■□□□ 1.19
USP39-217ENST00000491659 PROSER2Q86WR7 435 aaPredicted RBP22.47■■□□□ 1.19
USP39-217ENST00000491659 PIK3R4Q99570 1358 aa22.47■■□□□ 1.19
USP39-217ENST00000491659 MPHOSPH9Q99550 1183 aa22.45■■□□□ 1.18
USP39-217ENST00000491659 PPLO60437 1756 aa22.45■■□□□ 1.18
USP39-217ENST00000491659 CCDC144AA2RUR9 1427 aa22.44■■□□□ 1.18
USP39-217ENST00000491659 FOXD1Q16676 465 aa22.44■■□□□ 1.18
USP39-217ENST00000491659 RAB3GAP2Q9H2M9 1393 aa22.44■■□□□ 1.18
USP39-217ENST00000491659 XRN1Q8IZH2 1706 aaKnown RBP22.42■■□□□ 1.18
USP39-217ENST00000491659 MSH6P52701 1360 aa22.41■■□□□ 1.18
USP39-217ENST00000491659 HSPA1LP34931 641 aa22.4■■□□□ 1.18
USP39-217ENST00000491659 RBM33Q96EV2 1170 aaKnown RBP22.39■■□□□ 1.17
USP39-217ENST00000491659 RPGRIP1LQ68CZ1 1315 aa22.38■■□□□ 1.17
USP39-217ENST00000491659 PTPRUQ92729 1446 aa22.37■■□□□ 1.17
USP39-217ENST00000491659 NCOA3Q9Y6Q9 1424 aa22.37■■□□□ 1.17
USP39-217ENST00000491659 SETD1AO15047 1707 aaKnown RBP22.37■■□□□ 1.17
USP39-217ENST00000491659 IFT172Q9UG01 1749 aa22.37■■□□□ 1.17
USP39-217ENST00000491659 VGFO15240 615 aaPredicted RBP22.36■■□□□ 1.17
USP39-217ENST00000491659 ROBO1Q9Y6N7 1651 aa22.36■■□□□ 1.17
USP39-217ENST00000491659 C14orf37Q86TY3 774 aa22.34■■□□□ 1.17
USP39-217ENST00000491659 AMOTL2Q9Y2J4 779 aa22.34■■□□□ 1.17
USP39-217ENST00000491659 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.34■■□□□ 1.17
USP39-217ENST00000491659 METP08581 1390 aa22.33■■□□□ 1.17
USP39-217ENST00000491659 DISP3Q9P2K9 1392 aa22.33■■□□□ 1.17
USP39-217ENST00000491659 SPATA31E1Q6ZUB1 1445 aa22.32■■□□□ 1.16
USP39-217ENST00000491659 FAM135BQ49AJ0 1406 aa22.31■■□□□ 1.16
USP39-217ENST00000491659 ANKRD30BQ9BXX2 1392 aa22.27■■□□□ 1.16
USP39-217ENST00000491659 MED1Q15648 1581 aaPredicted RBP22.27■■□□□ 1.16
USP39-217ENST00000491659 RGL3Q3MIN7 710 aa22.27■■□□□ 1.16
USP39-217ENST00000491659 NALCNQ8IZF0 1738 aa22.26■■□□□ 1.15
USP39-217ENST00000491659 HRCP23327 699 aa22.25■■□□□ 1.15
USP39-217ENST00000491659 DCCP43146 1447 aa22.24■■□□□ 1.15
USP39-217ENST00000491659 PTCH1Q13635 1447 aa22.24■■□□□ 1.15
USP39-217ENST00000491659 ATF3P18847 181 aa22.24■■□□□ 1.15
USP39-217ENST00000491659 CADPS2Q86UW7 1296 aa22.24■■□□□ 1.15
USP39-217ENST00000491659 C19orf44Q9H6X5 657 aa22.24■■□□□ 1.15
USP39-217ENST00000491659 PHLPP1O60346 1717 aa22.23■■□□□ 1.15
USP39-217ENST00000491659 SLAIN2Q9P270 581 aa22.23■■□□□ 1.15
USP39-217ENST00000491659 ADGRL3Q9HAR2 1447 aa22.22■■□□□ 1.15
USP39-217ENST00000491659 ADGRF5Q8IZF2 1346 aa22.21■■□□□ 1.15
USP39-217ENST00000491659 PRAG1Q86YV5 1406 aa22.21■■□□□ 1.15
USP39-217ENST00000491659 PIK3C2GO75747 1445 aa22.2■■□□□ 1.14
USP39-217ENST00000491659 LAMC1P11047 1609 aa22.2■■□□□ 1.14
USP39-217ENST00000491659 MYOM2P54296 1465 aa22.19■■□□□ 1.14
USP39-217ENST00000491659 KNDC1Q76NI1 1749 aa22.17■■□□□ 1.14
USP39-217ENST00000491659 ASXL1Q8IXJ9 1541 aa22.16■■□□□ 1.14
USP39-217ENST00000491659 ROBO2Q9HCK4 1378 aa22.15■■□□□ 1.14
USP39-217ENST00000491659 AHDC1Q5TGY3 1603 aaPredicted RBP22.15■■□□□ 1.14
USP39-217ENST00000491659 COL16A1Q07092 1604 aaPredicted RBP22.14■■□□□ 1.14
USP39-217ENST00000491659 NRXN1Q9ULB1 1477 aa22.14■■□□□ 1.13
USP39-217ENST00000491659 MST1RQ04912 1400 aa22.14■■□□□ 1.13
USP39-217ENST00000491659 TECPR2O15040 1411 aa22.11■■□□□ 1.13
USP39-217ENST00000491659 NHSL1Q5SYE7 1610 aa22.1■■□□□ 1.13
USP39-217ENST00000491659 LRPPRCP42704 1394 aaKnown RBP22.1■■□□□ 1.13
USP39-217ENST00000491659 PHF23Q9BUL5 403 aaPredicted RBP22.09■■□□□ 1.13
USP39-217ENST00000491659 CDC42BPGQ6DT37 1551 aa22.08■■□□□ 1.13
USP39-217ENST00000491659 BRINP3Q76B58 766 aa22.07■■□□□ 1.12
USP39-217ENST00000491659 YTHDC2Q9H6S0 1430 aaKnown RBP22.06■■□□□ 1.12
USP39-217ENST00000491659 ILDR2Q71H61 639 aa22.06■■□□□ 1.12
USP39-217ENST00000491659 STK26Q9P289 416 aa22.06■■□□□ 1.12
USP39-217ENST00000491659 JCADQ9P266 1359 aa22.06■■□□□ 1.12
USP39-217ENST00000491659 SHPRHQ149N8 1683 aa22.05■■□□□ 1.12
USP39-217ENST00000491659 ABCC11Q96J66 1382 aa22.05■■□□□ 1.12
USP39-217ENST00000491659 TMEM132EQ6IEE7 984 aa22.05■■□□□ 1.12
USP39-217ENST00000491659 C14orf93Q9H972 538 aaKnown RBP22.05■■□□□ 1.12
USP39-217ENST00000491659 C1orf167Q5SNV9 1468 aa22.03■■□□□ 1.12
USP39-217ENST00000491659 DHX57Q6P158 1386 aaKnown RBP22.02■■□□□ 1.12
USP39-217ENST00000491659 CFAP70Q5T0N1 1121 aa22.02■■□□□ 1.12
USP39-217ENST00000491659 DCAF11Q8TEB1 546 aa22.01■■□□□ 1.11
USP39-217ENST00000491659 STAC3Q96MF2 364 aa22■■□□□ 1.11
USP39-217ENST00000491659 KDM2AQ9Y2K7 1162 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms