RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 RUNDC1Q96C34 613 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 RNF123Q5XPI4 1314 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 EIF3AQ14152 1382 aaKnown RBP15.97■□□□□ 0.15
SHOX2-205ENST00000490689 NASPP49321 788 aaPredicted RBP15.97■□□□□ 0.15
SHOX2-205ENST00000490689 ABCC5O15440 1437 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 MCTP1Q6DN14 999 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 BIVM-ERCC5R4GMW8 1640 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 PRDM2Q13029 1718 aa15.97■□□□□ 0.15
SHOX2-205ENST00000490689 SEC24BO95487 1268 aa15.96■□□□□ 0.15
SHOX2-205ENST00000490689 DDX19BQ9UMR2 479 aa15.96■□□□□ 0.15
SHOX2-205ENST00000490689 MTHFSP49914 203 aa15.96■□□□□ 0.15
SHOX2-205ENST00000490689 KIAA2012Q0VF49 1180 aa15.96■□□□□ 0.14
SHOX2-205ENST00000490689 EFCAB2Q5VUJ9 269 aa15.95■□□□□ 0.14
SHOX2-205ENST00000490689 KANK1Q14678 1352 aa15.95■□□□□ 0.14
SHOX2-205ENST00000490689 CFAP70Q5T0N1 1121 aa15.94■□□□□ 0.14
SHOX2-205ENST00000490689 NPM1P06748 294 aaKnown RBP eCLIP15.94■□□□□ 0.14
SHOX2-205ENST00000490689 RNF214Q8ND24 703 aa15.94■□□□□ 0.14
SHOX2-205ENST00000490689 EPRSP07814 1512 aaKnown RBP15.94■□□□□ 0.14
SHOX2-205ENST00000490689 CC2D2AQ9P2K1 1620 aa15.94■□□□□ 0.14
SHOX2-205ENST00000490689 RSPH4AQ5TD94 716 aa15.94■□□□□ 0.14
SHOX2-205ENST00000490689 MPNDQ8N594 471 aa15.93■□□□□ 0.14
SHOX2-205ENST00000490689 C1orf115Q9H7X2 142 aa15.93■□□□□ 0.14
SHOX2-205ENST00000490689 XRCC6P12956 609 aaKnown RBP eCLIP15.92■□□□□ 0.14
SHOX2-205ENST00000490689 EXOSC9Q06265 439 aaKnown RBP15.92■□□□□ 0.14
SHOX2-205ENST00000490689 CAVIN1Q6NZI2 390 aaKnown RBP15.92■□□□□ 0.14
SHOX2-205ENST00000490689 ERBINQ96RT1 1412 aa15.92■□□□□ 0.14
SHOX2-205ENST00000490689 RIPK4P57078 832 aa15.91■□□□□ 0.14
SHOX2-205ENST00000490689 CHAF1AQ13111 956 aaPredicted RBP15.91■□□□□ 0.14
SHOX2-205ENST00000490689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.91■□□□□ 0.14
SHOX2-205ENST00000490689 WWC1Q8IX03 1113 aa15.91■□□□□ 0.14
SHOX2-205ENST00000490689 SPAG9O60271 1321 aaKnown RBP15.91■□□□□ 0.14
SHOX2-205ENST00000490689 ROCK1Q13464 1354 aa15.91■□□□□ 0.14
SHOX2-205ENST00000490689 SLC4A10Q6U841 1118 aa15.91■□□□□ 0.14
SHOX2-205ENST00000490689 TAOK2Q9UL54 1235 aa15.91■□□□□ 0.14
SHOX2-205ENST00000490689 TOPBP1Q92547 1522 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 KIAA1211Q6ZU35 1233 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 DRC7Q8IY82 874 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 SLC12A5Q9H2X9 1139 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 ST18O60284 1047 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 RRAGDQ9NQL2 400 aaPredicted RBP15.9■□□□□ 0.14
SHOX2-205ENST00000490689 TMEM132EQ6IEE7 984 aa15.9■□□□□ 0.14
SHOX2-205ENST00000490689 TRIM6-TRIM34B2RNG4 842 aa15.89■□□□□ 0.13
SHOX2-205ENST00000490689 MCCP23508 829 aa15.88■□□□□ 0.13
SHOX2-205ENST00000490689 NGEFQ8N5V2 710 aa15.88■□□□□ 0.13
SHOX2-205ENST00000490689 DISP3Q9P2K9 1392 aa15.88■□□□□ 0.13
SHOX2-205ENST00000490689 C9orf84Q5VXU9 1444 aa15.88■□□□□ 0.13
SHOX2-205ENST00000490689 KCNJ4P48050 445 aa15.87■□□□□ 0.13
SHOX2-205ENST00000490689 GGNBP2Q9H3C7 697 aa15.87■□□□□ 0.13
SHOX2-205ENST00000490689 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.87■□□□□ 0.13
SHOX2-205ENST00000490689 ZMYND15Q9H091 742 aa15.87■□□□□ 0.13
SHOX2-205ENST00000490689 TNNQ9UQP3 1299 aa15.87■□□□□ 0.13
SHOX2-205ENST00000490689 GOLGA6L4A6NEF3 574 aa15.87■□□□□ 0.13
SHOX2-205ENST00000490689 SPINK5Q9NQ38 1064 aaPredicted RBP15.86■□□□□ 0.13
SHOX2-205ENST00000490689 RRP9O43818 475 aaKnown RBP15.86■□□□□ 0.13
SHOX2-205ENST00000490689 MVPQ14764 893 aaKnown RBP15.86■□□□□ 0.13
SHOX2-205ENST00000490689 NOB1Q9ULX3 412 aaKnown RBP15.86■□□□□ 0.13
SHOX2-205ENST00000490689 RARSP54136 660 aaKnown RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 OS9Q13438 667 aaPredicted RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 PCDHB15Q9Y5E8 787 aa15.85■□□□□ 0.13
SHOX2-205ENST00000490689 HDGFL2Q7Z4V5 671 aaPredicted RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 ESF1Q9H501 851 aaKnown RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 LRPPRCP42704 1394 aaKnown RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 PRPF40AO75400 957 aaKnown RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 SYAP1Q96A49 352 aaPredicted RBP15.85■□□□□ 0.13
SHOX2-205ENST00000490689 C14orf37Q86TY3 774 aa15.84■□□□□ 0.13
SHOX2-205ENST00000490689 PLEKHH1Q9ULM0 1364 aa15.84■□□□□ 0.13
SHOX2-205ENST00000490689 ERCC6Q03468 1493 aa15.84■□□□□ 0.13
SHOX2-205ENST00000490689 TBC1D32Q96NH3 1257 aa15.83■□□□□ 0.13
SHOX2-205ENST00000490689 BCL11BQ9C0K0 894 aaPredicted RBP15.83■□□□□ 0.13
SHOX2-205ENST00000490689 HMOX1P09601 288 aa15.83■□□□□ 0.12
SHOX2-205ENST00000490689 RILPL2Q969X0 211 aa15.83■□□□□ 0.12
SHOX2-205ENST00000490689 PER1O15534 1290 aaPredicted RBP15.82■□□□□ 0.12
SHOX2-205ENST00000490689 TROQ12816 1431 aaPredicted RBP15.82■□□□□ 0.12
SHOX2-205ENST00000490689 CFAP44Q96MT7 982 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 ABCA10Q8WWZ4 1543 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 PARD3Q8TEW0 1356 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 TPM2P07951 284 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 TNPO1Q92973 898 aaKnown RBP15.81■□□□□ 0.12
SHOX2-205ENST00000490689 CABP2Q9NPB3 220 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 TERF2IPQ9NYB0 399 aa15.81■□□□□ 0.12
SHOX2-205ENST00000490689 NKTRP30414 1462 aaKnown RBP15.8■□□□□ 0.12
SHOX2-205ENST00000490689 MINK1Q8N4C8 1332 aaPredicted RBP15.8■□□□□ 0.12
SHOX2-205ENST00000490689 CDK11BP21127 795 aaKnown RBP15.8■□□□□ 0.12
SHOX2-205ENST00000490689 AAMPQ13685 434 aa15.8■□□□□ 0.12
SHOX2-205ENST00000490689 A0A0U1RQG5 324 aaPredicted RBP15.8■□□□□ 0.12
SHOX2-205ENST00000490689 NUCB2P80303 420 aa15.8■□□□□ 0.12
SHOX2-205ENST00000490689 AFAP1Q8N556 730 aa15.8■□□□□ 0.12
SHOX2-205ENST00000490689 CHMP3Q9Y3E7 222 aa15.8■□□□□ 0.12
SHOX2-205ENST00000490689 HECW1Q76N89 1606 aa15.8■□□□□ 0.12
SHOX2-205ENST00000490689 CCDC173Q0VFZ6 552 aa15.79■□□□□ 0.12
SHOX2-205ENST00000490689 KDM2BQ8NHM5 1336 aa15.79■□□□□ 0.12
SHOX2-205ENST00000490689 ATF7IPQ6VMQ6 1270 aa15.79■□□□□ 0.12
SHOX2-205ENST00000490689 NAP1L2Q9ULW6 460 aaPredicted RBP15.79■□□□□ 0.12
SHOX2-205ENST00000490689 TMEM57Q8N5G2 664 aa15.79■□□□□ 0.12
SHOX2-205ENST00000490689 KIF16BQ96L93 1317 aa15.78■□□□□ 0.12
SHOX2-205ENST00000490689 DIAPH1O60610 1272 aaKnown RBP15.78■□□□□ 0.12
SHOX2-205ENST00000490689 PTPRGP23470 1445 aa15.78■□□□□ 0.12
SHOX2-205ENST00000490689 ZRSR1Q15695 479 aaKnown RBP15.78■□□□□ 0.12
SHOX2-205ENST00000490689 K7ELQ4 463 aaPredicted RBP15.78■□□□□ 0.12
SHOX2-205ENST00000490689 RLBP1P12271 317 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms