RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CPS1P31327 1500 aa27.19■■□□□ 1.94
COL9A3-214ENST00000490398 FOXD1Q16676 465 aa27.18■■□□□ 1.94
COL9A3-214ENST00000490398 CLTCL1P53675 1640 aa27.16■■□□□ 1.94
COL9A3-214ENST00000490398 TRPM2O94759 1503 aa27.15■■□□□ 1.94
COL9A3-214ENST00000490398 SETD5Q9C0A6 1442 aa27.14■■□□□ 1.93
COL9A3-214ENST00000490398 LRRC7Q96NW7 1537 aa27.13■■□□□ 1.93
COL9A3-214ENST00000490398 PLEKHG1Q9ULL1 1385 aa27.12■■□□□ 1.93
COL9A3-214ENST00000490398 UBAP1LF5GYI3 381 aa27.12■■□□□ 1.93
COL9A3-214ENST00000490398 PPP1R15AO75807 674 aaPredicted RBP27.12■■□□□ 1.93
COL9A3-214ENST00000490398 BCANQ96GW7 911 aa27.11■■□□□ 1.93
COL9A3-214ENST00000490398 MPHOSPH9Q99550 1183 aa27.1■■□□□ 1.93
COL9A3-214ENST00000490398 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.08■■□□□ 1.93
COL9A3-214ENST00000490398 RAB3GAP2Q9H2M9 1393 aa27.08■■□□□ 1.93
COL9A3-214ENST00000490398 HDGFP51858 240 aaKnown RBP27.06■■□□□ 1.92
COL9A3-214ENST00000490398 ZNF326Q5BKZ1 582 aaKnown RBP27.05■■□□□ 1.92
COL9A3-214ENST00000490398 ADAMTS13Q76LX8 1427 aa27.05■■□□□ 1.92
COL9A3-214ENST00000490398 KCNA6P17658 529 aa27.04■■□□□ 1.92
COL9A3-214ENST00000490398 RBM33Q96EV2 1170 aaKnown RBP27.03■■□□□ 1.92
COL9A3-214ENST00000490398 ALKQ9UM73 1620 aa27.02■■□□□ 1.92
COL9A3-214ENST00000490398 TBX22Q9Y458 520 aa27■■□□□ 1.91
COL9A3-214ENST00000490398 NEXMIFQ5QGS0 1516 aa27■■□□□ 1.91
COL9A3-214ENST00000490398 PIP4K2BP78356 416 aa26.98■■□□□ 1.91
COL9A3-214ENST00000490398 NWD1Q149M9 1564 aa26.97■■□□□ 1.91
COL9A3-214ENST00000490398 XIRP1Q702N8 1843 aaKnown RBP26.97■■□□□ 1.91
COL9A3-214ENST00000490398 TMEM94Q12767 1356 aa26.97■■□□□ 1.91
COL9A3-214ENST00000490398 NRXN3Q9Y4C0 1643 aa26.96■■□□□ 1.91
COL9A3-214ENST00000490398 TOM1O60784 492 aa26.95■■□□□ 1.9
COL9A3-214ENST00000490398 KIF1BO60333 1816 aa26.95■■□□□ 1.9
COL9A3-214ENST00000490398 PROSER2Q86WR7 435 aaPredicted RBP26.94■■□□□ 1.9
COL9A3-214ENST00000490398 SCAF1Q9H7N4 1312 aaKnown RBP26.93■■□□□ 1.9
COL9A3-214ENST00000490398 PTPRUQ92729 1446 aa26.92■■□□□ 1.9
COL9A3-214ENST00000490398 CHD2O14647 1828 aaKnown RBP26.91■■□□□ 1.9
COL9A3-214ENST00000490398 SETBP1Q9Y6X0 1596 aa26.91■■□□□ 1.9
COL9A3-214ENST00000490398 CCDC144AA2RUR9 1427 aa26.9■■□□□ 1.9
COL9A3-214ENST00000490398 DIP2AQ14689 1571 aa26.9■■□□□ 1.9
COL9A3-214ENST00000490398 NKTRP30414 1462 aaKnown RBP26.9■■□□□ 1.9
COL9A3-214ENST00000490398 METP08581 1390 aa26.88■■□□□ 1.89
COL9A3-214ENST00000490398 SPATA31E1Q6ZUB1 1445 aa26.88■■□□□ 1.89
COL9A3-214ENST00000490398 ACIN1Q9UKV3 1341 aaKnown RBP26.87■■□□□ 1.89
COL9A3-214ENST00000490398 RGL3Q3MIN7 710 aa26.86■■□□□ 1.89
COL9A3-214ENST00000490398 PIK3R4Q99570 1358 aa26.85■■□□□ 1.89
COL9A3-214ENST00000490398 HSPA1LP34931 641 aa26.85■■□□□ 1.89
COL9A3-214ENST00000490398 AMOTL2Q9Y2J4 779 aa26.85■■□□□ 1.89
COL9A3-214ENST00000490398 RPGRIP1LQ68CZ1 1315 aa26.84■■□□□ 1.89
COL9A3-214ENST00000490398 HRCP23327 699 aa26.83■■□□□ 1.89
COL9A3-214ENST00000490398 VGFO15240 615 aaPredicted RBP26.81■■□□□ 1.88
COL9A3-214ENST00000490398 PPLO60437 1756 aa26.8■■□□□ 1.88
COL9A3-214ENST00000490398 ADGRF5Q8IZF2 1346 aa26.8■■□□□ 1.88
COL9A3-214ENST00000490398 ANKRD30BQ9BXX2 1392 aa26.79■■□□□ 1.88
COL9A3-214ENST00000490398 XRN1Q8IZH2 1706 aaKnown RBP26.76■■□□□ 1.88
COL9A3-214ENST00000490398 SETD1AO15047 1707 aaKnown RBP26.75■■□□□ 1.87
COL9A3-214ENST00000490398 MSH6P52701 1360 aa26.74■■□□□ 1.87
COL9A3-214ENST00000490398 IFT172Q9UG01 1749 aa26.72■■□□□ 1.87
COL9A3-214ENST00000490398 C14orf37Q86TY3 774 aa26.71■■□□□ 1.87
COL9A3-214ENST00000490398 NCOA3Q9Y6Q9 1424 aa26.7■■□□□ 1.86
COL9A3-214ENST00000490398 FAM135BQ49AJ0 1406 aa26.68■■□□□ 1.86
COL9A3-214ENST00000490398 SLAIN2Q9P270 581 aa26.67■■□□□ 1.86
COL9A3-214ENST00000490398 C19orf44Q9H6X5 657 aa26.66■■□□□ 1.86
COL9A3-214ENST00000490398 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.65■■□□□ 1.86
COL9A3-214ENST00000490398 ROBO2Q9HCK4 1378 aa26.65■■□□□ 1.86
COL9A3-214ENST00000490398 PIK3C2GO75747 1445 aa26.65■■□□□ 1.86
COL9A3-214ENST00000490398 ASXL1Q8IXJ9 1541 aa26.64■■□□□ 1.85
COL9A3-214ENST00000490398 ROBO1Q9Y6N7 1651 aa26.63■■□□□ 1.85
COL9A3-214ENST00000490398 TMEM132EQ6IEE7 984 aa26.62■■□□□ 1.85
COL9A3-214ENST00000490398 NRXN1Q9ULB1 1477 aa26.61■■□□□ 1.85
COL9A3-214ENST00000490398 PTCH1Q13635 1447 aa26.59■■□□□ 1.85
COL9A3-214ENST00000490398 ATF3P18847 181 aa26.59■■□□□ 1.85
COL9A3-214ENST00000490398 CADPS2Q86UW7 1296 aa26.59■■□□□ 1.85
COL9A3-214ENST00000490398 MYOM2P54296 1465 aa26.58■■□□□ 1.85
COL9A3-214ENST00000490398 STK26Q9P289 416 aa26.58■■□□□ 1.85
COL9A3-214ENST00000490398 DISP3Q9P2K9 1392 aa26.58■■□□□ 1.84
COL9A3-214ENST00000490398 PRAG1Q86YV5 1406 aa26.57■■□□□ 1.84
COL9A3-214ENST00000490398 ADGRL3Q9HAR2 1447 aa26.57■■□□□ 1.84
COL9A3-214ENST00000490398 CFAP70Q5T0N1 1121 aa26.57■■□□□ 1.84
COL9A3-214ENST00000490398 DHX57Q6P158 1386 aaKnown RBP26.57■■□□□ 1.84
COL9A3-214ENST00000490398 C14orf93Q9H972 538 aaKnown RBP26.56■■□□□ 1.84
COL9A3-214ENST00000490398 NALCNQ8IZF0 1738 aa26.56■■□□□ 1.84
COL9A3-214ENST00000490398 KDM2AQ9Y2K7 1162 aa26.54■■□□□ 1.84
COL9A3-214ENST00000490398 LRPPRCP42704 1394 aaKnown RBP26.54■■□□□ 1.84
COL9A3-214ENST00000490398 DCAF11Q8TEB1 546 aa26.53■■□□□ 1.84
COL9A3-214ENST00000490398 DCCP43146 1447 aa26.53■■□□□ 1.84
COL9A3-214ENST00000490398 MST1RQ04912 1400 aa26.53■■□□□ 1.84
COL9A3-214ENST00000490398 WAPLQ7Z5K2 1190 aa26.52■■□□□ 1.84
COL9A3-214ENST00000490398 PLEKHH1Q9ULM0 1364 aa26.51■■□□□ 1.83
COL9A3-214ENST00000490398 BRINP3Q76B58 766 aa26.5■■□□□ 1.83
COL9A3-214ENST00000490398 TECPR2O15040 1411 aa26.49■■□□□ 1.83
COL9A3-214ENST00000490398 YTHDC2Q9H6S0 1430 aaKnown RBP26.49■■□□□ 1.83
COL9A3-214ENST00000490398 ABCC11Q96J66 1382 aa26.49■■□□□ 1.83
COL9A3-214ENST00000490398 MED1Q15648 1581 aaPredicted RBP26.48■■□□□ 1.83
COL9A3-214ENST00000490398 TRIM26Q12899 539 aaPredicted RBP26.46■■□□□ 1.83
COL9A3-214ENST00000490398 ILDR2Q71H61 639 aa26.45■■□□□ 1.82
COL9A3-214ENST00000490398 PHLPP1O60346 1717 aa26.43■■□□□ 1.82
COL9A3-214ENST00000490398 DDX17Q92841 729 aaKnown RBP26.43■■□□□ 1.82
COL9A3-214ENST00000490398 SIN3AQ96ST3 1273 aa26.43■■□□□ 1.82
COL9A3-214ENST00000490398 C1orf167Q5SNV9 1468 aa26.42■■□□□ 1.82
COL9A3-214ENST00000490398 KNDC1Q76NI1 1749 aa26.42■■□□□ 1.82
COL9A3-214ENST00000490398 ADGRB1O14514 1584 aa26.42■■□□□ 1.82
COL9A3-214ENST00000490398 COL16A1Q07092 1604 aaPredicted RBP26.42■■□□□ 1.82
COL9A3-214ENST00000490398 LAMC1P11047 1609 aa26.4■■□□□ 1.82
COL9A3-214ENST00000490398 AHDC1Q5TGY3 1603 aaPredicted RBP26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms